Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09605

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
2,587,262	-		ABI39_RS09600	0.60	+1.1
2,587,262	-		ABI39_RS09600	0.60	+0.5
2,587,277	-		ABI39_RS09600	0.61	+0.4
2,587,282	-		ABI39_RS09600	0.61	-0.5
2,587,317	+		ABI39_RS09600	0.63	-0.2
2,587,431	-		ABI39_RS09600	0.68	-1.5
2,587,470	+		ABI39_RS09600	0.70	+0.1
2,587,486	+		ABI39_RS09600	0.70	+0.3
2,587,514	-		ABI39_RS09600	0.72	-0.6
2,587,576	+		ABI39_RS09600	0.74	-0.4
2,587,578	+		ABI39_RS09600	0.74	+0.3
2,587,578	+		ABI39_RS09600	0.74	+0.6
2,587,579	-		ABI39_RS09600	0.75	+0.2
2,587,579	-		ABI39_RS09600	0.75	+0.6
2,587,788	+		ABI39_RS09600	0.84	+0.1
2,587,841	-		ABI39_RS09600	0.87	+0.6
2,587,911	-		ABI39_RS09600	0.90	+0.6
2,587,935	-				-1.3
2,587,950	-				+0.3
2,587,951	+				-1.1
2,587,956	+				+0.3
2,588,052	-				+0.2
2,588,056	+				+0.2
2,588,176	+				+0.3
2,588,193	+				-0.2
2,588,405	+				-0.1
2,588,407	+				+0.7
2,588,409	+				+0.3
2,588,428	+				+0.0
2,588,429	-				+0.5
2,588,505	+				-0.0
2,588,519	+				-0.1
2,588,520	-				+0.1
2,588,542	+				+0.3
2,588,548	+				-0.1
2,588,707	-				-0.4
2,588,708	+				-0.5
2,588,715	-				-0.3
2,588,715	-				+0.6
2,588,728	-				-0.1
2,589,197	-		ABI39_RS09610	0.32	+0.1
2,589,197	-		ABI39_RS09610	0.32	+0.6
2,589,197	-		ABI39_RS09610	0.32	-0.4
2,589,267	-		ABI39_RS09610	0.38	+0.3