Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02710

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02700 and ABI39_RS02705 are separated by 31 nucleotidesABI39_RS02705 and ABI39_RS02710 are separated by 77 nucleotidesABI39_RS02710 and ABI39_RS02715 overlap by 17 nucleotides ABI39_RS02700: ABI39_RS02700 - dihydropteroate synthase, at 785,033 to 785,890 _RS02700 ABI39_RS02705: ABI39_RS02705 - diadenylate cyclase CdaA, at 785,922 to 786,686 _RS02705 ABI39_RS02710: ABI39_RS02710 - GNAT family N-acetyltransferase, at 786,764 to 787,774 _RS02710 ABI39_RS02715: ABI39_RS02715 - DUF2156 domain-containing protein, at 787,758 to 788,660 _RS02715 Position (kb) 786 787 788Strain fitness (log2 ratio) -1 0 1 2at 786.725 kb on + strandat 786.744 kb on + strandat 786.745 kb on - strandat 786.745 kb on - strandat 786.787 kb on - strandat 786.832 kb on + strandat 786.935 kb on - strand, within ABI39_RS02710at 786.938 kb on + strand, within ABI39_RS02710at 786.938 kb on + strand, within ABI39_RS02710at 786.938 kb on + strand, within ABI39_RS02710at 786.939 kb on - strand, within ABI39_RS02710at 786.939 kb on - strand, within ABI39_RS02710at 786.942 kb on + strand, within ABI39_RS02710at 786.943 kb on - strand, within ABI39_RS02710at 786.943 kb on - strand, within ABI39_RS02710at 786.964 kb on + strand, within ABI39_RS02710at 787.046 kb on - strand, within ABI39_RS02710at 787.071 kb on + strand, within ABI39_RS02710at 787.073 kb on + strand, within ABI39_RS02710at 787.073 kb on + strand, within ABI39_RS02710at 787.073 kb on + strand, within ABI39_RS02710at 787.074 kb on - strand, within ABI39_RS02710at 787.074 kb on - strand, within ABI39_RS02710at 787.074 kb on - strand, within ABI39_RS02710at 787.074 kb on - strand, within ABI39_RS02710at 787.074 kb on - strand, within ABI39_RS02710at 787.076 kb on - strand, within ABI39_RS02710at 787.094 kb on + strand, within ABI39_RS02710at 787.139 kb on - strand, within ABI39_RS02710at 787.140 kb on + strand, within ABI39_RS02710at 787.140 kb on + strand, within ABI39_RS02710at 787.140 kb on + strand, within ABI39_RS02710at 787.143 kb on - strand, within ABI39_RS02710at 787.143 kb on - strand, within ABI39_RS02710at 787.229 kb on + strand, within ABI39_RS02710at 787.242 kb on - strand, within ABI39_RS02710at 787.261 kb on + strand, within ABI39_RS02710at 787.575 kb on - strand, within ABI39_RS02710at 787.578 kb on + strand, within ABI39_RS02710at 787.586 kb on - strand, within ABI39_RS02710at 787.623 kb on - strand, within ABI39_RS02710at 787.623 kb on - strand, within ABI39_RS02710at 787.642 kb on + strand, within ABI39_RS02710at 787.787 kb on + strandat 787.787 kb on + strandat 787.875 kb on + strand, within ABI39_RS02715at 787.877 kb on + strand, within ABI39_RS02715at 787.877 kb on + strand, within ABI39_RS02715at 787.879 kb on + strand, within ABI39_RS02715at 787.880 kb on - strand, within ABI39_RS02715at 787.910 kb on - strand, within ABI39_RS02715at 787.910 kb on - strand, within ABI39_RS02715at 787.913 kb on + strand, within ABI39_RS02715at 787.996 kb on + strand, within ABI39_RS02715at 788.000 kb on + strand, within ABI39_RS02715at 788.123 kb on + strand, within ABI39_RS02715at 788.191 kb on + strand, within ABI39_RS02715at 788.235 kb on - strand, within ABI39_RS02715at 788.350 kb on - strand, within ABI39_RS02715at 788.350 kb on - strand, within ABI39_RS02715at 788.470 kb on + strand, within ABI39_RS02715at 788.509 kb on + strand, within ABI39_RS02715at 788.510 kb on - strand, within ABI39_RS02715at 788.527 kb on + strand, within ABI39_RS02715at 788.617 kb on - strandat 788.641 kb on - strandat 788.648 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
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786,725 + +0.8
786,744 + -0.4
786,745 - -1.5
786,745 - -0.1
786,787 - +0.4
786,832 + +0.8
786,935 - ABI39_RS02710 0.17 +1.2
786,938 + ABI39_RS02710 0.17 +0.9
786,938 + ABI39_RS02710 0.17 +1.1
786,938 + ABI39_RS02710 0.17 +0.3
786,939 - ABI39_RS02710 0.17 +0.8
786,939 - ABI39_RS02710 0.17 +0.7
786,942 + ABI39_RS02710 0.18 +1.0
786,943 - ABI39_RS02710 0.18 +0.4
786,943 - ABI39_RS02710 0.18 +0.3
786,964 + ABI39_RS02710 0.20 -0.4
787,046 - ABI39_RS02710 0.28 +0.4
787,071 + ABI39_RS02710 0.30 +0.9
787,073 + ABI39_RS02710 0.31 +0.1
787,073 + ABI39_RS02710 0.31 +1.3
787,073 + ABI39_RS02710 0.31 +0.3
787,074 - ABI39_RS02710 0.31 +1.2
787,074 - ABI39_RS02710 0.31 +0.9
787,074 - ABI39_RS02710 0.31 +0.5
787,074 - ABI39_RS02710 0.31 +2.4
787,074 - ABI39_RS02710 0.31 +0.6
787,076 - ABI39_RS02710 0.31 +0.7
787,094 + ABI39_RS02710 0.33 +0.6
787,139 - ABI39_RS02710 0.37 +0.7
787,140 + ABI39_RS02710 0.37 +0.5
787,140 + ABI39_RS02710 0.37 +0.6
787,140 + ABI39_RS02710 0.37 +1.4
787,143 - ABI39_RS02710 0.37 +0.7
787,143 - ABI39_RS02710 0.37 +1.3
787,229 + ABI39_RS02710 0.46 +0.4
787,242 - ABI39_RS02710 0.47 +0.6
787,261 + ABI39_RS02710 0.49 +1.2
787,575 - ABI39_RS02710 0.80 +0.8
787,578 + ABI39_RS02710 0.81 +0.3
787,586 - ABI39_RS02710 0.81 +0.5
787,623 - ABI39_RS02710 0.85 +0.8
787,623 - ABI39_RS02710 0.85 +0.4
787,642 + ABI39_RS02710 0.87 +0.8
787,787 + -0.5
787,787 + -0.5
787,875 + ABI39_RS02715 0.13 +0.1
787,877 + ABI39_RS02715 0.13 -0.7
787,877 + ABI39_RS02715 0.13 +0.2
787,879 + ABI39_RS02715 0.13 -0.8
787,880 - ABI39_RS02715 0.14 +0.5
787,910 - ABI39_RS02715 0.17 +0.4
787,910 - ABI39_RS02715 0.17 -0.8
787,913 + ABI39_RS02715 0.17 +0.0
787,996 + ABI39_RS02715 0.26 -1.2
788,000 + ABI39_RS02715 0.27 -0.3
788,123 + ABI39_RS02715 0.40 -0.2
788,191 + ABI39_RS02715 0.48 -0.4
788,235 - ABI39_RS02715 0.53 +0.3
788,350 - ABI39_RS02715 0.66 -1.4
788,350 - ABI39_RS02715 0.66 -0.7
788,470 + ABI39_RS02715 0.79 -0.2
788,509 + ABI39_RS02715 0.83 -1.5
788,510 - ABI39_RS02715 0.83 -0.5
788,527 + ABI39_RS02715 0.85 +0.4
788,617 - -0.5
788,641 - -0.2
788,648 + +0.6

Or see this region's nucleotide sequence