Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09775

Experiment: Red Arabinan from sugar-beet; filtered 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
2,623,553	+		ABI39_RS09770	0.60	-0.8
2,623,634	+		ABI39_RS09770	0.65	-0.9
2,623,711	-		ABI39_RS09770	0.69	-0.5
2,623,764	-		ABI39_RS09770	0.72	-0.8
2,624,166	+				-0.6
2,624,167	-				-0.5
2,624,171	-				-1.0
2,624,204	+				-2.2
2,624,433	+				-0.1
2,624,515	+				-0.0
2,624,516	-				+0.1
2,624,543	+				-0.0
2,624,543	+				-0.4
2,624,560	+				+0.2
2,624,563	-				-1.3
2,624,576	+				-0.4
2,624,576	+				-0.1
2,624,577	-				-0.2
2,624,651	-				-0.4
2,624,758	+		ABI39_RS09775	0.17	-0.3
2,624,758	+		ABI39_RS09775	0.17	+0.1
2,624,759	-		ABI39_RS09775	0.17	-0.1
2,624,760	+		ABI39_RS09775	0.17	-0.7
2,624,776	+		ABI39_RS09775	0.18	-0.1
2,624,867	+		ABI39_RS09775	0.25	+0.3
2,624,868	-		ABI39_RS09775	0.25	-0.1
2,625,051	-		ABI39_RS09775	0.39	-0.2
2,625,051	-		ABI39_RS09775	0.39	+0.1
2,625,205	-		ABI39_RS09775	0.50	-0.2
2,625,242	-		ABI39_RS09775	0.53	-0.2
2,625,245	+		ABI39_RS09775	0.53	-0.1
2,625,245	+		ABI39_RS09775	0.53	+0.3
2,625,366	-		ABI39_RS09775	0.62	-0.0
2,625,366	-		ABI39_RS09775	0.62	+0.1
2,625,369	+		ABI39_RS09775	0.62	-0.3
2,625,369	+		ABI39_RS09775	0.62	-0.4
2,625,369	+		ABI39_RS09775	0.62	-0.6
2,625,370	-		ABI39_RS09775	0.62	-0.2
2,625,730	-		ABI39_RS09775	0.89	-0.3
2,625,811	+				-1.6
2,625,896	+				-0.0
2,625,897	-				+0.5
2,625,900	+				+0.0
2,625,901	-				+0.2
2,625,908	-				+0.3
2,625,949	+				-0.6
2,626,015	-		ABI39_RS09780	0.13	+0.3
2,626,092	-		ABI39_RS09780	0.22	+0.4
2,626,134	+		ABI39_RS09780	0.27	+0.6
2,626,271	-		ABI39_RS09780	0.43	+0.1
2,626,421	+		ABI39_RS09780	0.61	-0.0
2,626,422	-		ABI39_RS09780	0.61	+0.5
2,626,424	+		ABI39_RS09780	0.61	-0.2
2,626,425	-		ABI39_RS09780	0.62	+0.6
2,626,426	+		ABI39_RS09780	0.62	+0.3
2,626,511	+		ABI39_RS09780	0.72	-0.4
2,626,543	+		ABI39_RS09780	0.76	-0.1
2,626,602	-		ABI39_RS09780	0.83	+0.3
2,626,665	+				+0.1
2,626,737	+				-0.6