Experiment: Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01135 and ABI39_RS01140 are separated by 67 nucleotides ABI39_RS01140 and ABI39_RS01145 are separated by 294 nucleotides ABI39_RS01145 and ABI39_RS01150 are separated by 22 nucleotides
ABI39_RS01135: ABI39_RS01135 - S41 family peptidase, at 359,834 to 360,862
_RS01135
ABI39_RS01140: ABI39_RS01140 - tRNA-Leu, at 360,930 to 361,011
_RS01140
ABI39_RS01145: ABI39_RS01145 - L-rhamnose mutarotase, at 361,306 to 361,689
_RS01145
ABI39_RS01150: ABI39_RS01150 - RagB/SusD family nutrient uptake outer membrane protein, at 361,712 to 363,400
_RS01150
Position (kb) 361
362 Strain fitness (log2 ratio) -1
0
1 at 360.455 kb on - strand, within ABI39_RS01135 at 360.455 kb on - strand, within ABI39_RS01135 at 360.455 kb on - strand, within ABI39_RS01135 at 360.616 kb on - strand, within ABI39_RS01135 at 360.725 kb on + strand, within ABI39_RS01135 at 360.820 kb on + strand at 361.077 kb on - strand at 361.180 kb on - strand at 361.253 kb on + strand at 361.279 kb on - strand at 361.320 kb on - strand at 361.326 kb on + strand at 361.339 kb on - strand at 361.503 kb on + strand, within ABI39_RS01145 at 361.504 kb on - strand, within ABI39_RS01145 at 361.504 kb on - strand, within ABI39_RS01145 at 361.505 kb on + strand, within ABI39_RS01145 at 361.506 kb on - strand, within ABI39_RS01145 at 361.506 kb on - strand, within ABI39_RS01145 at 361.576 kb on - strand, within ABI39_RS01145 at 361.692 kb on + strand at 361.771 kb on + strand at 361.819 kb on - strand at 361.821 kb on + strand at 361.826 kb on - strand at 361.912 kb on + strand, within ABI39_RS01150 at 362.156 kb on + strand, within ABI39_RS01150 at 362.156 kb on + strand, within ABI39_RS01150 at 362.170 kb on - strand, within ABI39_RS01150 at 362.186 kb on - strand, within ABI39_RS01150 at 362.188 kb on - strand, within ABI39_RS01150 at 362.209 kb on + strand, within ABI39_RS01150 at 362.217 kb on - strand, within ABI39_RS01150 at 362.219 kb on - strand, within ABI39_RS01150 at 362.275 kb on - strand, within ABI39_RS01150 at 362.278 kb on + strand, within ABI39_RS01150 at 362.316 kb on - strand, within ABI39_RS01150 at 362.325 kb on + strand, within ABI39_RS01150 at 362.326 kb on - strand, within ABI39_RS01150 at 362.340 kb on + strand, within ABI39_RS01150 at 362.341 kb on - strand, within ABI39_RS01150 at 362.397 kb on + strand, within ABI39_RS01150 at 362.416 kb on - strand, within ABI39_RS01150 at 362.416 kb on - strand, within ABI39_RS01150 at 362.476 kb on + strand, within ABI39_RS01150 at 362.479 kb on - strand, within ABI39_RS01150 at 362.479 kb on - strand, within ABI39_RS01150 at 362.523 kb on - strand, within ABI39_RS01150 at 362.526 kb on + strand, within ABI39_RS01150 at 362.547 kb on + strand, within ABI39_RS01150 at 362.549 kb on + strand, within ABI39_RS01150 at 362.549 kb on + strand, within ABI39_RS01150 at 362.550 kb on - strand, within ABI39_RS01150 at 362.550 kb on - strand, within ABI39_RS01150 at 362.591 kb on - strand, within ABI39_RS01150 at 362.623 kb on - strand, within ABI39_RS01150 at 362.655 kb on + strand, within ABI39_RS01150
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 5 mg/ml (C) remove 360,455 - ABI39_RS01135 0.60 -0.1 360,455 - ABI39_RS01135 0.60 +0.2 360,455 - ABI39_RS01135 0.60 +0.2 360,616 - ABI39_RS01135 0.76 +0.0 360,725 + ABI39_RS01135 0.87 +0.4 360,820 + +0.0 361,077 - +0.0 361,180 - +1.2 361,253 + -0.2 361,279 - +0.5 361,320 - +0.6 361,326 + +0.1 361,339 - +0.3 361,503 + ABI39_RS01145 0.51 +0.6 361,504 - ABI39_RS01145 0.52 +0.1 361,504 - ABI39_RS01145 0.52 +0.5 361,505 + ABI39_RS01145 0.52 +0.3 361,506 - ABI39_RS01145 0.52 +0.6 361,506 - ABI39_RS01145 0.52 +0.0 361,576 - ABI39_RS01145 0.70 +0.3 361,692 + +0.1 361,771 + -0.3 361,819 - -0.1 361,821 + +0.4 361,826 - +0.1 361,912 + ABI39_RS01150 0.12 +0.7 362,156 + ABI39_RS01150 0.26 +0.3 362,156 + ABI39_RS01150 0.26 -0.1 362,170 - ABI39_RS01150 0.27 +0.1 362,186 - ABI39_RS01150 0.28 +0.6 362,188 - ABI39_RS01150 0.28 -0.3 362,209 + ABI39_RS01150 0.29 +0.1 362,217 - ABI39_RS01150 0.30 -0.1 362,219 - ABI39_RS01150 0.30 +0.5 362,275 - ABI39_RS01150 0.33 -0.2 362,278 + ABI39_RS01150 0.34 +0.2 362,316 - ABI39_RS01150 0.36 -0.2 362,325 + ABI39_RS01150 0.36 +0.4 362,326 - ABI39_RS01150 0.36 +0.2 362,340 + ABI39_RS01150 0.37 +0.3 362,341 - ABI39_RS01150 0.37 +1.3 362,397 + ABI39_RS01150 0.41 +0.5 362,416 - ABI39_RS01150 0.42 -0.5 362,416 - ABI39_RS01150 0.42 +0.1 362,476 + ABI39_RS01150 0.45 -0.2 362,479 - ABI39_RS01150 0.45 -0.4 362,479 - ABI39_RS01150 0.45 +0.4 362,523 - ABI39_RS01150 0.48 +0.4 362,526 + ABI39_RS01150 0.48 -0.0 362,547 + ABI39_RS01150 0.49 +0.5 362,549 + ABI39_RS01150 0.50 +0.4 362,549 + ABI39_RS01150 0.50 -0.3 362,550 - ABI39_RS01150 0.50 +0.4 362,550 - ABI39_RS01150 0.50 -0.3 362,591 - ABI39_RS01150 0.52 +0.0 362,623 - ABI39_RS01150 0.54 -0.7 362,655 + ABI39_RS01150 0.56 +0.1
Or see this region's nucleotide sequence