Strain Fitness in Escherichia coli ECRC98 around JDDGAC_22445

Experiment: Bas37

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas37
4,293,026	-	tolC	JDDGAC_22440	0.50	-2.5
4,293,131	+	tolC	JDDGAC_22440	0.57	-2.0
4,293,132	-	tolC	JDDGAC_22440	0.57	-0.0
4,293,132	-	tolC	JDDGAC_22440	0.57	-0.8
4,293,132	-	tolC	JDDGAC_22440	0.57	-1.5
4,293,132	-	tolC	JDDGAC_22440	0.57	-1.2
4,293,136	-	tolC	JDDGAC_22440	0.58	-0.3
4,293,177	+	tolC	JDDGAC_22440	0.60	-2.4
4,293,180	+	tolC	JDDGAC_22440	0.61	-2.0
4,293,181	-	tolC	JDDGAC_22440	0.61	-1.7
4,293,265	-	tolC	JDDGAC_22440	0.66	-0.6
4,293,287	-	tolC	JDDGAC_22440	0.68	-0.5
4,293,321	+	tolC	JDDGAC_22440	0.70	-1.2
4,293,322	-	tolC	JDDGAC_22440	0.70	+1.5
4,293,340	-	tolC	JDDGAC_22440	0.71	-0.3
4,293,359	+	tolC	JDDGAC_22440	0.73	-1.3
4,293,360	-	tolC	JDDGAC_22440	0.73	+1.5
4,293,404	+	tolC	JDDGAC_22440	0.76	+0.1
4,293,485	-	tolC	JDDGAC_22440	0.81	+0.2
4,293,548	+	tolC	JDDGAC_22440	0.85	-2.2
4,293,549	-	tolC	JDDGAC_22440	0.86	-2.1
4,293,642	+				-2.8
4,293,661	-				-1.6
4,293,786	+				+0.2
4,293,786	+				-0.1
4,293,786	+				-1.8
4,293,806	+				-0.7
4,293,806	+				-1.2
4,293,865	+				-1.1
4,293,888	+				+0.2
4,293,937	+				+0.8
4,293,938	-				+1.8
4,293,938	-				+0.8
4,293,945	+				+0.0
4,293,949	-				-0.5
4,293,949	-				+1.4
4,293,949	-				+1.2
4,294,039	+	nudF	JDDGAC_22445	0.11	-1.0
4,294,069	-	nudF	JDDGAC_22445	0.16	-0.3
4,294,085	+	nudF	JDDGAC_22445	0.19	-0.8
4,294,213	+	nudF	JDDGAC_22445	0.39	-0.6
4,294,349	+	nudF	JDDGAC_22445	0.61	+0.9
4,294,350	-	nudF	JDDGAC_22445	0.61	-0.8
4,294,350	-	nudF	JDDGAC_22445	0.61	-0.1
4,294,350	-	nudF	JDDGAC_22445	0.61	-0.5
4,294,395	+	nudF	JDDGAC_22445	0.68	-2.0
4,294,395	+	nudF	JDDGAC_22445	0.68	+1.6
4,294,431	+	nudF	JDDGAC_22445	0.74	+0.3
4,294,432	-	nudF	JDDGAC_22445	0.74	-0.9
4,294,461	+	nudF	JDDGAC_22445	0.78	-0.8
4,294,479	-	nudF	JDDGAC_22445	0.81	-2.3
4,294,495	+	nudF	JDDGAC_22445	0.84	-0.4
4,294,495	+	nudF	JDDGAC_22445	0.84	+0.4
4,294,496	-	nudF	JDDGAC_22445	0.84	+0.5
4,294,496	-	nudF	JDDGAC_22445	0.84	-0.2
4,294,607	-				-2.4
4,294,704	-	yqiB	JDDGAC_22450	0.25	+0.7
4,294,704	-	yqiB	JDDGAC_22450	0.25	-1.1
4,294,708	+	yqiB	JDDGAC_22450	0.26	+0.3
4,294,708	+	yqiB	JDDGAC_22450	0.26	+0.9
4,294,709	-	yqiB	JDDGAC_22450	0.26	-0.3
4,294,760	-	yqiB	JDDGAC_22450	0.39	+0.5
4,294,760	-	yqiB	JDDGAC_22450	0.39	-0.9
4,294,764	+	yqiB	JDDGAC_22450	0.39	-0.3
4,294,765	-	yqiB	JDDGAC_22450	0.40	-0.5
4,294,778	+	yqiB	JDDGAC_22450	0.43	-0.2
4,294,778	+	yqiB	JDDGAC_22450	0.43	+0.9
4,294,778	+	yqiB	JDDGAC_22450	0.43	-1.2
4,294,779	-	yqiB	JDDGAC_22450	0.43	+1.3
4,294,804	+	yqiB	JDDGAC_22450	0.49	-0.7
4,294,805	-	yqiB	JDDGAC_22450	0.49	-1.1
4,294,805	-	yqiB	JDDGAC_22450	0.49	-0.8
4,294,838	-	yqiB	JDDGAC_22450	0.57	-0.3
4,294,838	-	yqiB	JDDGAC_22450	0.57	+2.1
4,294,915	-	yqiB	JDDGAC_22450	0.75	-2.1
4,295,017	+				-0.8
4,295,032	+				+2.5
4,295,032	+				+1.0
4,295,032	+				+0.8
4,295,237	+	cpdA	JDDGAC_22455	0.23	-3.7
4,295,347	+	cpdA	JDDGAC_22455	0.37	-0.7
4,295,347	+	cpdA	JDDGAC_22455	0.37	-1.6
4,295,347	+	cpdA	JDDGAC_22455	0.37	-1.3
4,295,347	+	cpdA	JDDGAC_22455	0.37	-0.8
4,295,348	-	cpdA	JDDGAC_22455	0.37	-0.7
4,295,518	-	cpdA	JDDGAC_22455	0.57	-0.8
4,295,546	+	cpdA	JDDGAC_22455	0.61	-1.1
4,295,559	+	cpdA	JDDGAC_22455	0.62	-1.5
4,295,559	+	cpdA	JDDGAC_22455	0.62	-0.4
4,295,559	+	cpdA	JDDGAC_22455	0.62	-1.2