Strain Fitness in Escherichia coli ECRC98 around JDDGAC_28540

Experiment: Bas37

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntwzx and rfbE are separated by 2 nucleotidesrfbE and rfaB are separated by 24 nucleotides JDDGAC_28535: wzx - O157 family O-antigen flippase, at 5,474,627 to 5,476,018 wzx JDDGAC_28540: rfbE - GDP-perosamine synthase RfbE/PerA, at 5,476,021 to 5,477,115 rfbE JDDGAC_28545: rfaB - glycosyl transferase, at 5,477,140 to 5,478,354 rfaB Position (kb) 5476 5477 5478Strain fitness (log2 ratio) -3 -2 -1 0 1at 5476.176 kb on + strand, within rfbEat 5476.575 kb on + strand, within rfbEat 5476.725 kb on + strand, within rfbE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
remove
5,476,176 + rfbE JDDGAC_28540 0.14 -3.0
5,476,575 + rfbE JDDGAC_28540 0.51 -2.8
5,476,725 + rfbE JDDGAC_28540 0.64 -0.6

Or see this region's nucleotide sequence