Strain Fitness in Escherichia coli ECRC98 around JDDGAC_22170

Experiment: WM_JK36

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_JK36
4,236,191	-	uxaA	JDDGAC_22160	0.78	+0.7
4,236,249	-	uxaA	JDDGAC_22160	0.82	+0.1
4,236,282	+	uxaA	JDDGAC_22160	0.84	-0.3
4,236,383	+				+0.7
4,236,508	+				-0.1
4,236,591	+				-1.8
4,236,704	-	ygjV	JDDGAC_22165	0.20	+1.5
4,236,704	-	ygjV	JDDGAC_22165	0.20	-0.7
4,236,704	-	ygjV	JDDGAC_22165	0.20	-0.1
4,236,705	+	ygjV	JDDGAC_22165	0.20	+0.0
4,236,706	-	ygjV	JDDGAC_22165	0.20	-0.5
4,236,783	+	ygjV	JDDGAC_22165	0.34	-1.0
4,236,783	+	ygjV	JDDGAC_22165	0.34	-0.3
4,236,792	+	ygjV	JDDGAC_22165	0.36	-0.5
4,236,793	-	ygjV	JDDGAC_22165	0.36	-0.5
4,236,797	+	ygjV	JDDGAC_22165	0.37	+0.7
4,236,798	-	ygjV	JDDGAC_22165	0.37	-1.5
4,236,884	+	ygjV	JDDGAC_22165	0.52	-1.3
4,236,885	-	ygjV	JDDGAC_22165	0.53	+0.2
4,237,032	+	ygjV	JDDGAC_22165	0.79	-1.7
4,237,059	+	ygjV	JDDGAC_22165	0.84	+0.1
4,237,060	-	ygjV	JDDGAC_22165	0.84	+0.4
4,237,104	+				+0.3
4,237,105	-				-0.0
4,237,156	+				-1.2
4,237,156	+				+1.0
4,237,156	+				+1.1
4,237,156	+				-0.8
4,237,157	-				-0.4
4,237,169	-				+0.3
4,237,273	+				-1.9
4,237,274	-				-0.7
4,237,324	+	sstT	JDDGAC_22170	0.14	+0.8
4,237,324	+	sstT	JDDGAC_22170	0.14	+0.9
4,237,324	+	sstT	JDDGAC_22170	0.14	-0.2
4,237,325	-	sstT	JDDGAC_22170	0.14	+0.3
4,237,327	+	sstT	JDDGAC_22170	0.14	+0.1
4,237,328	-	sstT	JDDGAC_22170	0.14	+0.4
4,237,447	+	sstT	JDDGAC_22170	0.24	+2.2
4,237,448	-	sstT	JDDGAC_22170	0.24	-1.6
4,237,448	-	sstT	JDDGAC_22170	0.24	+0.5
4,237,533	+	sstT	JDDGAC_22170	0.31	+0.3
4,237,534	-	sstT	JDDGAC_22170	0.31	+0.1
4,237,574	-	sstT	JDDGAC_22170	0.34	+0.2
4,237,617	+	sstT	JDDGAC_22170	0.37	+0.7
4,237,618	-	sstT	JDDGAC_22170	0.38	-0.7
4,237,618	-	sstT	JDDGAC_22170	0.38	+1.0
4,237,618	-	sstT	JDDGAC_22170	0.38	-1.1
4,237,720	+	sstT	JDDGAC_22170	0.46	+1.2
4,237,720	+	sstT	JDDGAC_22170	0.46	-1.6
4,237,721	-	sstT	JDDGAC_22170	0.46	+0.5
4,237,721	-	sstT	JDDGAC_22170	0.46	+0.1
4,237,790	-	sstT	JDDGAC_22170	0.51	-0.2
4,237,790	-	sstT	JDDGAC_22170	0.51	+0.9
4,237,810	+	sstT	JDDGAC_22170	0.53	-1.8
4,237,847	-	sstT	JDDGAC_22170	0.56	-0.4
4,237,867	+	sstT	JDDGAC_22170	0.58	+0.9
4,237,868	-	sstT	JDDGAC_22170	0.58	-1.3
4,237,868	-	sstT	JDDGAC_22170	0.58	+0.6
4,237,950	+	sstT	JDDGAC_22170	0.64	+0.4
4,237,950	+	sstT	JDDGAC_22170	0.64	+1.0
4,237,950	+	sstT	JDDGAC_22170	0.64	-0.6
4,237,951	-	sstT	JDDGAC_22170	0.64	+1.5
4,237,954	+	sstT	JDDGAC_22170	0.64	-0.2
4,237,954	+	sstT	JDDGAC_22170	0.64	+0.7
4,238,018	+	sstT	JDDGAC_22170	0.70	-0.9
4,238,018	+	sstT	JDDGAC_22170	0.70	+0.3
4,238,019	-	sstT	JDDGAC_22170	0.70	+1.4
4,238,053	+	sstT	JDDGAC_22170	0.72	-1.1
4,238,133	+	sstT	JDDGAC_22170	0.79	-0.5
4,238,188	+	sstT	JDDGAC_22170	0.83	+0.1
4,238,188	+	sstT	JDDGAC_22170	0.83	+0.0
4,238,188	+	sstT	JDDGAC_22170	0.83	-0.9
4,238,189	-	sstT	JDDGAC_22170	0.83	-0.5
4,238,189	-	sstT	JDDGAC_22170	0.83	+1.5
4,238,254	+	sstT	JDDGAC_22170	0.89	-0.6
4,238,254	+	sstT	JDDGAC_22170	0.89	+0.2
4,238,255	-	sstT	JDDGAC_22170	0.89	+0.6
4,238,259	-	sstT	JDDGAC_22170	0.89	-0.1
4,238,259	-	sstT	JDDGAC_22170	0.89	+0.0
4,238,259	-	sstT	JDDGAC_22170	0.89	+3.1
4,238,259	-	sstT	JDDGAC_22170	0.89	-0.4
4,238,462	+				+0.2
4,238,462	+				-0.8
4,238,462	+				+0.3
4,238,463	-				-1.5
4,238,463	-				+0.2
4,238,486	+				+0.1
4,238,667	-				+0.1
4,238,771	-				+0.5
4,238,812	-				+3.7
4,238,812	-				+1.1
4,238,844	+				-1.5
4,238,845	-				+0.4
4,238,858	-				-0.3
4,238,858	-				-1.1
4,238,903	+	alx	JDDGAC_22175	0.11	-0.1
4,238,904	-	alx	JDDGAC_22175	0.11	-0.2
4,238,904	-	alx	JDDGAC_22175	0.11	-0.2
4,238,904	-	alx	JDDGAC_22175	0.11	-0.0
4,238,904	-	alx	JDDGAC_22175	0.11	-1.1
4,238,961	-	alx	JDDGAC_22175	0.17	+0.3
4,239,005	+	alx	JDDGAC_22175	0.22	-0.0
4,239,005	+	alx	JDDGAC_22175	0.22	-0.3
4,239,093	+	alx	JDDGAC_22175	0.31	-0.4
4,239,174	+	alx	JDDGAC_22175	0.39	-0.0
4,239,175	-	alx	JDDGAC_22175	0.39	-0.2
4,239,175	-	alx	JDDGAC_22175	0.39	+1.0
4,239,324	+	alx	JDDGAC_22175	0.55	-0.4
4,239,326	+	alx	JDDGAC_22175	0.55	+0.9
4,239,382	-	alx	JDDGAC_22175	0.61	+0.6