Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_10765

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_10755 and HUW76_10760 are separated by 19 nucleotidesHUW76_10760 and HUW76_10765 are separated by 1 nucleotidesHUW76_10765 and HUW76_10770 overlap by 4 nucleotides HUW76_10755: HUW76_10755 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 2,261,031 to 2,262,398 _10755 HUW76_10760: HUW76_10760 - KH domain-containing protein, at 2,262,418 to 2,263,155 _10760 HUW76_10765: HUW76_10765 - membrane protein insertase YidC, at 2,263,157 to 2,263,762 _10765 HUW76_10770: HUW76_10770 - membrane protein insertion efficiency factor YidD, at 2,263,759 to 2,264,007 _10770 Position (kb) 2263 2264Strain fitness (log2 ratio) -1 0 1 2 3at 2262.401 kb on + strandat 2262.409 kb on - strandat 2262.409 kb on - strandat 2262.446 kb on - strandat 2262.446 kb on - strandat 2262.446 kb on - strandat 2262.448 kb on - strandat 2262.456 kb on - strandat 2262.456 kb on - strandat 2262.473 kb on - strandat 2262.473 kb on - strandat 2262.483 kb on - strandat 2262.488 kb on - strandat 2262.544 kb on - strand, within HUW76_10760at 2262.551 kb on - strand, within HUW76_10760at 2262.604 kb on - strand, within HUW76_10760at 2262.689 kb on - strand, within HUW76_10760at 2262.689 kb on - strand, within HUW76_10760at 2262.732 kb on - strand, within HUW76_10760at 2262.732 kb on - strand, within HUW76_10760at 2262.738 kb on - strand, within HUW76_10760at 2262.773 kb on - strand, within HUW76_10760at 2262.773 kb on - strand, within HUW76_10760at 2263.001 kb on - strand, within HUW76_10760at 2263.001 kb on - strand, within HUW76_10760at 2263.001 kb on - strand, within HUW76_10760at 2263.002 kb on - strand, within HUW76_10760at 2263.002 kb on - strand, within HUW76_10760at 2263.002 kb on - strand, within HUW76_10760at 2263.012 kb on - strand, within HUW76_10760at 2263.012 kb on - strand, within HUW76_10760at 2263.012 kb on - strand, within HUW76_10760at 2263.012 kb on - strand, within HUW76_10760at 2263.012 kb on - strand, within HUW76_10760at 2263.012 kb on - strand, within HUW76_10760at 2263.012 kb on - strand, within HUW76_10760at 2263.043 kb on - strand, within HUW76_10760at 2263.043 kb on - strand, within HUW76_10760at 2263.085 kb on - strandat 2263.085 kb on - strandat 2263.164 kb on - strandat 2263.207 kb on - strandat 2263.207 kb on - strandat 2263.811 kb on - strand, within HUW76_10770at 2263.816 kb on - strand, within HUW76_10770at 2263.816 kb on - strand, within HUW76_10770at 2263.816 kb on - strand, within HUW76_10770at 2263.816 kb on - strand, within HUW76_10770at 2263.868 kb on - strand, within HUW76_10770at 2263.907 kb on - strand, within HUW76_10770at 2263.907 kb on - strand, within HUW76_10770at 2263.907 kb on - strand, within HUW76_10770at 2263.907 kb on - strand, within HUW76_10770at 2263.907 kb on - strand, within HUW76_10770at 2263.907 kb on - strand, within HUW76_10770at 2263.907 kb on - strand, within HUW76_10770at 2263.914 kb on - strand, within HUW76_10770at 2263.914 kb on - strand, within HUW76_10770at 2263.919 kb on - strand, within HUW76_10770at 2263.919 kb on - strand, within HUW76_10770at 2263.919 kb on - strand, within HUW76_10770at 2263.919 kb on - strand, within HUW76_10770at 2263.919 kb on - strand, within HUW76_10770at 2263.919 kb on - strand, within HUW76_10770at 2263.919 kb on - strand, within HUW76_10770

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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2,262,401 + -0.2
2,262,409 - +3.7
2,262,409 - +3.0
2,262,446 - +1.5
2,262,446 - +1.7
2,262,446 - +1.5
2,262,448 - +2.0
2,262,456 - -0.1
2,262,456 - +3.0
2,262,473 - +2.4
2,262,473 - +1.6
2,262,483 - +1.0
2,262,488 - +1.5
2,262,544 - HUW76_10760 0.17 +1.7
2,262,551 - HUW76_10760 0.18 +1.5
2,262,604 - HUW76_10760 0.25 +2.0
2,262,689 - HUW76_10760 0.37 +1.3
2,262,689 - HUW76_10760 0.37 +1.7
2,262,732 - HUW76_10760 0.43 +0.6
2,262,732 - HUW76_10760 0.43 +1.2
2,262,738 - HUW76_10760 0.43 +1.4
2,262,773 - HUW76_10760 0.48 +1.1
2,262,773 - HUW76_10760 0.48 +1.9
2,263,001 - HUW76_10760 0.79 +0.9
2,263,001 - HUW76_10760 0.79 +1.1
2,263,001 - HUW76_10760 0.79 +1.3
2,263,002 - HUW76_10760 0.79 +1.6
2,263,002 - HUW76_10760 0.79 +0.8
2,263,002 - HUW76_10760 0.79 +1.1
2,263,012 - HUW76_10760 0.80 +0.2
2,263,012 - HUW76_10760 0.80 +1.7
2,263,012 - HUW76_10760 0.80 +1.3
2,263,012 - HUW76_10760 0.80 +1.3
2,263,012 - HUW76_10760 0.80 +1.6
2,263,012 - HUW76_10760 0.80 +1.1
2,263,012 - HUW76_10760 0.80 +1.1
2,263,043 - HUW76_10760 0.85 +1.5
2,263,043 - HUW76_10760 0.85 +1.3
2,263,085 - +1.4
2,263,085 - +1.7
2,263,164 - +1.7
2,263,207 - -0.7
2,263,207 - -0.3
2,263,811 - HUW76_10770 0.21 +0.4
2,263,816 - HUW76_10770 0.23 -0.8
2,263,816 - HUW76_10770 0.23 -1.2
2,263,816 - HUW76_10770 0.23 +0.4
2,263,816 - HUW76_10770 0.23 -0.4
2,263,868 - HUW76_10770 0.44 +0.4
2,263,907 - HUW76_10770 0.59 -0.2
2,263,907 - HUW76_10770 0.59 +0.6
2,263,907 - HUW76_10770 0.59 +0.2
2,263,907 - HUW76_10770 0.59 +0.3
2,263,907 - HUW76_10770 0.59 +0.1
2,263,907 - HUW76_10770 0.59 +1.7
2,263,907 - HUW76_10770 0.59 +1.4
2,263,914 - HUW76_10770 0.62 +0.2
2,263,914 - HUW76_10770 0.62 -0.1
2,263,919 - HUW76_10770 0.64 +0.5
2,263,919 - HUW76_10770 0.64 +0.1
2,263,919 - HUW76_10770 0.64 -0.2
2,263,919 - HUW76_10770 0.64 +0.8
2,263,919 - HUW76_10770 0.64 -0.6
2,263,919 - HUW76_10770 0.64 -1.0
2,263,919 - HUW76_10770 0.64 -1.7

Or see this region's nucleotide sequence