Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_08945

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_08940 and HUW76_08945 are separated by 11 nucleotidesHUW76_08945 and HUW76_08950 overlap by 4 nucleotidesHUW76_08950 and HUW76_08955 are separated by 148 nucleotides HUW76_08940: HUW76_08940 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,882,929 to 1,884,683 _08940 HUW76_08945: HUW76_08945 - MerR family transcriptional regulator, at 1,884,695 to 1,885,075 _08945 HUW76_08950: HUW76_08950 - flavodoxin, at 1,885,072 to 1,885,587 _08950 HUW76_08955: HUW76_08955 - DMT family transporter, at 1,885,736 to 1,886,611 _08955 Position (kb) 1884 1885 1886Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1883.706 kb on - strand, within HUW76_08940at 1883.706 kb on - strand, within HUW76_08940at 1883.715 kb on - strand, within HUW76_08940at 1883.724 kb on + strand, within HUW76_08940at 1883.724 kb on + strand, within HUW76_08940at 1883.767 kb on - strand, within HUW76_08940at 1883.786 kb on + strand, within HUW76_08940at 1883.799 kb on - strand, within HUW76_08940at 1883.799 kb on - strand, within HUW76_08940at 1883.799 kb on - strand, within HUW76_08940at 1883.799 kb on - strand, within HUW76_08940at 1883.839 kb on + strand, within HUW76_08940at 1883.855 kb on + strand, within HUW76_08940at 1883.871 kb on - strand, within HUW76_08940at 1883.871 kb on - strand, within HUW76_08940at 1883.899 kb on + strand, within HUW76_08940at 1883.899 kb on + strand, within HUW76_08940at 1883.899 kb on + strand, within HUW76_08940at 1883.899 kb on + strand, within HUW76_08940at 1883.899 kb on + strand, within HUW76_08940at 1883.899 kb on + strand, within HUW76_08940at 1883.899 kb on + strand, within HUW76_08940at 1883.899 kb on + strand, within HUW76_08940at 1883.899 kb on + strand, within HUW76_08940at 1883.899 kb on + strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.907 kb on - strand, within HUW76_08940at 1883.913 kb on - strand, within HUW76_08940at 1883.913 kb on - strand, within HUW76_08940at 1883.933 kb on + strand, within HUW76_08940at 1883.933 kb on + strand, within HUW76_08940at 1883.933 kb on + strand, within HUW76_08940at 1883.941 kb on - strand, within HUW76_08940at 1883.941 kb on - strand, within HUW76_08940at 1883.941 kb on - strand, within HUW76_08940at 1883.941 kb on - strand, within HUW76_08940at 1883.941 kb on - strand, within HUW76_08940at 1883.942 kb on - strand, within HUW76_08940at 1883.946 kb on + strand, within HUW76_08940at 1883.946 kb on + strand, within HUW76_08940at 1883.948 kb on - strand, within HUW76_08940at 1883.979 kb on - strand, within HUW76_08940at 1883.983 kb on + strand, within HUW76_08940at 1883.983 kb on + strand, within HUW76_08940at 1884.028 kb on - strand, within HUW76_08940at 1884.038 kb on - strand, within HUW76_08940at 1884.048 kb on + strand, within HUW76_08940at 1884.048 kb on + strand, within HUW76_08940at 1884.060 kb on + strand, within HUW76_08940at 1884.068 kb on - strand, within HUW76_08940at 1884.068 kb on - strand, within HUW76_08940at 1884.213 kb on + strand, within HUW76_08940at 1884.213 kb on + strand, within HUW76_08940at 1884.221 kb on - strand, within HUW76_08940at 1884.221 kb on - strand, within HUW76_08940at 1884.235 kb on + strand, within HUW76_08940at 1884.295 kb on + strand, within HUW76_08940at 1884.295 kb on + strand, within HUW76_08940at 1884.303 kb on - strand, within HUW76_08940at 1884.312 kb on + strand, within HUW76_08940at 1884.317 kb on + strand, within HUW76_08940at 1884.325 kb on - strand, within HUW76_08940at 1884.360 kb on + strand, within HUW76_08940at 1884.384 kb on + strand, within HUW76_08940at 1884.384 kb on + strand, within HUW76_08940at 1884.402 kb on + strand, within HUW76_08940at 1884.410 kb on - strand, within HUW76_08940at 1884.410 kb on - strand, within HUW76_08940at 1884.410 kb on - strand, within HUW76_08940at 1884.516 kb on + strandat 1884.516 kb on + strandat 1884.516 kb on + strandat 1884.524 kb on - strandat 1884.524 kb on - strandat 1884.530 kb on - strandat 1884.540 kb on - strandat 1884.578 kb on - strandat 1884.597 kb on - strandat 1884.750 kb on + strand, within HUW76_08945at 1884.760 kb on - strand, within HUW76_08945at 1884.828 kb on + strand, within HUW76_08945at 1884.828 kb on + strand, within HUW76_08945at 1884.828 kb on + strand, within HUW76_08945at 1884.829 kb on + strand, within HUW76_08945at 1884.837 kb on - strand, within HUW76_08945at 1884.871 kb on + strand, within HUW76_08945at 1884.876 kb on + strand, within HUW76_08945at 1884.907 kb on - strand, within HUW76_08945at 1884.912 kb on - strand, within HUW76_08945at 1884.912 kb on - strand, within HUW76_08945at 1884.912 kb on - strand, within HUW76_08945at 1884.922 kb on - strand, within HUW76_08945at 1884.922 kb on - strand, within HUW76_08945at 1884.924 kb on - strand, within HUW76_08945at 1884.924 kb on - strand, within HUW76_08945at 1884.938 kb on - strand, within HUW76_08945at 1884.938 kb on - strand, within HUW76_08945at 1884.989 kb on - strand, within HUW76_08945at 1884.989 kb on - strand, within HUW76_08945at 1884.992 kb on + strand, within HUW76_08945at 1885.029 kb on - strand, within HUW76_08945at 1885.049 kb on - strandat 1885.049 kb on - strandat 1885.075 kb on + strandat 1885.079 kb on - strandat 1885.079 kb on - strandat 1885.086 kb on + strandat 1885.086 kb on + strandat 1885.115 kb on + strandat 1885.123 kb on - strandat 1885.123 kb on - strandat 1885.123 kb on - strandat 1885.123 kb on - strandat 1885.125 kb on + strand, within HUW76_08950at 1885.128 kb on - strand, within HUW76_08950at 1885.128 kb on - strand, within HUW76_08950at 1885.138 kb on - strand, within HUW76_08950at 1885.138 kb on - strand, within HUW76_08950at 1885.143 kb on - strand, within HUW76_08950at 1885.143 kb on - strand, within HUW76_08950at 1885.196 kb on + strand, within HUW76_08950at 1885.196 kb on + strand, within HUW76_08950at 1885.213 kb on + strand, within HUW76_08950at 1885.281 kb on - strand, within HUW76_08950at 1885.281 kb on - strand, within HUW76_08950at 1885.283 kb on + strand, within HUW76_08950at 1885.283 kb on + strand, within HUW76_08950at 1885.283 kb on + strand, within HUW76_08950at 1885.287 kb on - strand, within HUW76_08950at 1885.287 kb on - strand, within HUW76_08950at 1885.287 kb on - strand, within HUW76_08950at 1885.287 kb on - strand, within HUW76_08950at 1885.303 kb on - strand, within HUW76_08950at 1885.316 kb on + strand, within HUW76_08950at 1885.316 kb on + strand, within HUW76_08950at 1885.316 kb on + strand, within HUW76_08950at 1885.316 kb on + strand, within HUW76_08950at 1885.316 kb on + strand, within HUW76_08950at 1885.330 kb on + strand, within HUW76_08950at 1885.346 kb on - strand, within HUW76_08950at 1885.346 kb on - strand, within HUW76_08950at 1885.354 kb on - strand, within HUW76_08950at 1885.448 kb on + strand, within HUW76_08950at 1885.473 kb on - strand, within HUW76_08950at 1885.595 kb on - strandat 1885.642 kb on - strandat 1885.727 kb on + strandat 1885.727 kb on + strandat 1885.729 kb on - strandat 1885.794 kb on - strandat 1885.794 kb on - strandat 1885.794 kb on - strandat 1885.794 kb on - strandat 1885.797 kb on + strandat 1885.838 kb on - strand, within HUW76_08955at 1885.971 kb on + strand, within HUW76_08955at 1885.979 kb on + strand, within HUW76_08955at 1885.979 kb on + strand, within HUW76_08955at 1885.979 kb on + strand, within HUW76_08955at 1885.987 kb on + strand, within HUW76_08955at 1885.987 kb on + strand, within HUW76_08955at 1886.000 kb on - strand, within HUW76_08955at 1886.035 kb on + strand, within HUW76_08955

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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1,883,706 - HUW76_08940 0.44 -0.2
1,883,706 - HUW76_08940 0.44 -0.4
1,883,715 - HUW76_08940 0.45 -0.7
1,883,724 + HUW76_08940 0.45 +0.8
1,883,724 + HUW76_08940 0.45 +1.6
1,883,767 - HUW76_08940 0.48 -1.2
1,883,786 + HUW76_08940 0.49 +0.6
1,883,799 - HUW76_08940 0.50 +0.0
1,883,799 - HUW76_08940 0.50 -0.3
1,883,799 - HUW76_08940 0.50 -1.6
1,883,799 - HUW76_08940 0.50 +1.4
1,883,839 + HUW76_08940 0.52 +0.4
1,883,855 + HUW76_08940 0.53 +1.4
1,883,871 - HUW76_08940 0.54 -0.1
1,883,871 - HUW76_08940 0.54 +0.8
1,883,899 + HUW76_08940 0.55 -0.8
1,883,899 + HUW76_08940 0.55 +5.7
1,883,899 + HUW76_08940 0.55 -0.0
1,883,899 + HUW76_08940 0.55 +1.6
1,883,899 + HUW76_08940 0.55 +1.8
1,883,899 + HUW76_08940 0.55 +1.6
1,883,899 + HUW76_08940 0.55 +0.8
1,883,899 + HUW76_08940 0.55 -0.4
1,883,899 + HUW76_08940 0.55 +1.9
1,883,899 + HUW76_08940 0.55 +0.6
1,883,907 - HUW76_08940 0.56 -0.4
1,883,907 - HUW76_08940 0.56 -1.6
1,883,907 - HUW76_08940 0.56 -0.4
1,883,907 - HUW76_08940 0.56 -0.0
1,883,907 - HUW76_08940 0.56 +0.0
1,883,907 - HUW76_08940 0.56 +0.3
1,883,907 - HUW76_08940 0.56 -0.8
1,883,907 - HUW76_08940 0.56 -1.9
1,883,907 - HUW76_08940 0.56 +0.0
1,883,907 - HUW76_08940 0.56 -0.2
1,883,907 - HUW76_08940 0.56 -1.8
1,883,907 - HUW76_08940 0.56 -0.4
1,883,907 - HUW76_08940 0.56 -0.5
1,883,907 - HUW76_08940 0.56 -0.0
1,883,907 - HUW76_08940 0.56 -0.5
1,883,907 - HUW76_08940 0.56 -0.7
1,883,913 - HUW76_08940 0.56 +0.3
1,883,913 - HUW76_08940 0.56 -0.4
1,883,933 + HUW76_08940 0.57 +0.3
1,883,933 + HUW76_08940 0.57 +0.1
1,883,933 + HUW76_08940 0.57 +3.1
1,883,941 - HUW76_08940 0.58 -2.3
1,883,941 - HUW76_08940 0.58 -0.0
1,883,941 - HUW76_08940 0.58 -1.3
1,883,941 - HUW76_08940 0.58 +2.0
1,883,941 - HUW76_08940 0.58 +0.3
1,883,942 - HUW76_08940 0.58 -0.6
1,883,946 + HUW76_08940 0.58 +2.1
1,883,946 + HUW76_08940 0.58 -0.2
1,883,948 - HUW76_08940 0.58 -0.0
1,883,979 - HUW76_08940 0.60 -1.1
1,883,983 + HUW76_08940 0.60 +1.5
1,883,983 + HUW76_08940 0.60 +1.0
1,884,028 - HUW76_08940 0.63 -0.1
1,884,038 - HUW76_08940 0.63 -1.3
1,884,048 + HUW76_08940 0.64 +3.6
1,884,048 + HUW76_08940 0.64 -0.6
1,884,060 + HUW76_08940 0.64 +0.6
1,884,068 - HUW76_08940 0.65 -0.2
1,884,068 - HUW76_08940 0.65 +0.0
1,884,213 + HUW76_08940 0.73 +0.8
1,884,213 + HUW76_08940 0.73 -0.2
1,884,221 - HUW76_08940 0.74 -2.2
1,884,221 - HUW76_08940 0.74 -0.4
1,884,235 + HUW76_08940 0.74 +0.3
1,884,295 + HUW76_08940 0.78 +0.9
1,884,295 + HUW76_08940 0.78 -0.3
1,884,303 - HUW76_08940 0.78 -0.6
1,884,312 + HUW76_08940 0.79 +0.5
1,884,317 + HUW76_08940 0.79 +0.9
1,884,325 - HUW76_08940 0.80 +0.2
1,884,360 + HUW76_08940 0.82 -0.1
1,884,384 + HUW76_08940 0.83 +1.7
1,884,384 + HUW76_08940 0.83 +0.7
1,884,402 + HUW76_08940 0.84 +0.2
1,884,410 - HUW76_08940 0.84 -0.3
1,884,410 - HUW76_08940 0.84 -0.3
1,884,410 - HUW76_08940 0.84 -0.1
1,884,516 + +0.7
1,884,516 + +1.7
1,884,516 + +0.8
1,884,524 - +0.2
1,884,524 - -0.3
1,884,530 - -0.0
1,884,540 - -0.8
1,884,578 - -1.6
1,884,597 - +0.5
1,884,750 + HUW76_08945 0.14 +0.1
1,884,760 - HUW76_08945 0.17 -0.3
1,884,828 + HUW76_08945 0.35 -0.8
1,884,828 + HUW76_08945 0.35 +1.4
1,884,828 + HUW76_08945 0.35 -0.7
1,884,829 + HUW76_08945 0.35 -0.4
1,884,837 - HUW76_08945 0.37 -0.1
1,884,871 + HUW76_08945 0.46 +0.3
1,884,876 + HUW76_08945 0.48 +1.0
1,884,907 - HUW76_08945 0.56 +0.3
1,884,912 - HUW76_08945 0.57 -0.7
1,884,912 - HUW76_08945 0.57 +1.0
1,884,912 - HUW76_08945 0.57 +0.1
1,884,922 - HUW76_08945 0.60 +0.2
1,884,922 - HUW76_08945 0.60 +0.6
1,884,924 - HUW76_08945 0.60 -0.1
1,884,924 - HUW76_08945 0.60 -0.4
1,884,938 - HUW76_08945 0.64 +1.5
1,884,938 - HUW76_08945 0.64 -0.0
1,884,989 - HUW76_08945 0.77 +0.1
1,884,989 - HUW76_08945 0.77 -0.3
1,884,992 + HUW76_08945 0.78 +0.7
1,885,029 - HUW76_08945 0.88 -0.1
1,885,049 - +0.1
1,885,049 - -0.8
1,885,075 + +2.0
1,885,079 - -0.4
1,885,079 - +1.2
1,885,086 + -0.0
1,885,086 + +0.1
1,885,115 + +0.7
1,885,123 - -0.0
1,885,123 - -0.6
1,885,123 - +1.4
1,885,123 - -0.2
1,885,125 + HUW76_08950 0.10 +0.8
1,885,128 - HUW76_08950 0.11 +0.6
1,885,128 - HUW76_08950 0.11 +0.7
1,885,138 - HUW76_08950 0.13 +0.2
1,885,138 - HUW76_08950 0.13 -0.5
1,885,143 - HUW76_08950 0.14 +1.0
1,885,143 - HUW76_08950 0.14 -0.3
1,885,196 + HUW76_08950 0.24 +1.4
1,885,196 + HUW76_08950 0.24 +1.4
1,885,213 + HUW76_08950 0.27 +0.9
1,885,281 - HUW76_08950 0.41 -1.6
1,885,281 - HUW76_08950 0.41 +1.5
1,885,283 + HUW76_08950 0.41 +1.5
1,885,283 + HUW76_08950 0.41 -0.4
1,885,283 + HUW76_08950 0.41 +0.2
1,885,287 - HUW76_08950 0.42 -0.7
1,885,287 - HUW76_08950 0.42 -0.2
1,885,287 - HUW76_08950 0.42 +0.6
1,885,287 - HUW76_08950 0.42 -0.2
1,885,303 - HUW76_08950 0.45 -0.9
1,885,316 + HUW76_08950 0.47 +0.4
1,885,316 + HUW76_08950 0.47 -0.3
1,885,316 + HUW76_08950 0.47 +0.4
1,885,316 + HUW76_08950 0.47 -1.4
1,885,316 + HUW76_08950 0.47 +0.2
1,885,330 + HUW76_08950 0.50 -0.1
1,885,346 - HUW76_08950 0.53 -1.0
1,885,346 - HUW76_08950 0.53 +1.1
1,885,354 - HUW76_08950 0.55 +1.1
1,885,448 + HUW76_08950 0.73 -0.1
1,885,473 - HUW76_08950 0.78 +0.1
1,885,595 - +0.3
1,885,642 - -0.6
1,885,727 + +0.2
1,885,727 + +1.0
1,885,729 - -0.0
1,885,794 - +0.0
1,885,794 - +1.0
1,885,794 - +0.6
1,885,794 - +0.3
1,885,797 + +0.8
1,885,838 - HUW76_08955 0.12 +0.4
1,885,971 + HUW76_08955 0.27 -0.2
1,885,979 + HUW76_08955 0.28 +0.9
1,885,979 + HUW76_08955 0.28 +2.2
1,885,979 + HUW76_08955 0.28 +2.4
1,885,987 + HUW76_08955 0.29 +1.2
1,885,987 + HUW76_08955 0.29 -1.1
1,886,000 - HUW76_08955 0.30 +0.5
1,886,035 + HUW76_08955 0.34 -0.6

Or see this region's nucleotide sequence