Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_07585

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_07575 and HUW76_07580 are separated by 401 nucleotidesHUW76_07580 and HUW76_07585 are separated by 190 nucleotidesHUW76_07585 and HUW76_07590 are separated by 2 nucleotidesHUW76_07590 and HUW76_07595 are separated by 23 nucleotides HUW76_07575: HUW76_07575 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 1,589,361 to 1,590,080 _07575 HUW76_07580: HUW76_07580 - HrgC protein, at 1,590,482 to 1,590,769 _07580 HUW76_07585: HUW76_07585 - alanine racemase, at 1,590,960 to 1,592,039 _07585 HUW76_07590: HUW76_07590 - DUF368 domain-containing protein, at 1,592,042 to 1,592,818 _07590 HUW76_07595: HUW76_07595 - prolipoprotein diacylglyceryl transferase, at 1,592,842 to 1,593,729 _07595 Position (kb) 1590 1591 1592 1593Strain fitness (log2 ratio) -1 0 1at 1590.212 kb on - strandat 1590.212 kb on - strandat 1590.212 kb on - strandat 1590.212 kb on - strandat 1590.212 kb on - strandat 1590.212 kb on - strandat 1590.219 kb on - strandat 1590.219 kb on - strandat 1590.359 kb on - strandat 1590.359 kb on - strandat 1590.359 kb on - strandat 1590.359 kb on - strandat 1590.416 kb on - strandat 1590.473 kb on + strandat 1590.543 kb on + strand, within HUW76_07580at 1590.543 kb on + strand, within HUW76_07580at 1590.549 kb on - strand, within HUW76_07580at 1590.551 kb on + strand, within HUW76_07580at 1590.551 kb on + strand, within HUW76_07580at 1590.559 kb on - strand, within HUW76_07580at 1590.559 kb on - strand, within HUW76_07580at 1590.588 kb on - strand, within HUW76_07580at 1590.611 kb on + strand, within HUW76_07580at 1590.614 kb on - strand, within HUW76_07580at 1590.633 kb on + strand, within HUW76_07580at 1590.647 kb on - strand, within HUW76_07580at 1590.647 kb on - strand, within HUW76_07580at 1590.692 kb on - strand, within HUW76_07580at 1590.698 kb on + strand, within HUW76_07580at 1590.706 kb on + strand, within HUW76_07580at 1590.706 kb on + strand, within HUW76_07580at 1590.760 kb on - strandat 1592.415 kb on + strand, within HUW76_07590at 1592.688 kb on + strand, within HUW76_07590

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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1,590,212 - -0.2
1,590,212 - -0.2
1,590,212 - -0.9
1,590,212 - +0.1
1,590,212 - -0.6
1,590,212 - -0.2
1,590,219 - -0.0
1,590,219 - -1.3
1,590,359 - -0.6
1,590,359 - -0.5
1,590,359 - -0.7
1,590,359 - -0.9
1,590,416 - -0.5
1,590,473 + +0.1
1,590,543 + HUW76_07580 0.21 -0.3
1,590,543 + HUW76_07580 0.21 -1.0
1,590,549 - HUW76_07580 0.23 -0.1
1,590,551 + HUW76_07580 0.24 +0.2
1,590,551 + HUW76_07580 0.24 -0.1
1,590,559 - HUW76_07580 0.27 +0.1
1,590,559 - HUW76_07580 0.27 -1.1
1,590,588 - HUW76_07580 0.37 +0.3
1,590,611 + HUW76_07580 0.45 -0.7
1,590,614 - HUW76_07580 0.46 +1.2
1,590,633 + HUW76_07580 0.52 -0.9
1,590,647 - HUW76_07580 0.57 +0.7
1,590,647 - HUW76_07580 0.57 +0.4
1,590,692 - HUW76_07580 0.73 +0.4
1,590,698 + HUW76_07580 0.75 -0.3
1,590,706 + HUW76_07580 0.78 -0.6
1,590,706 + HUW76_07580 0.78 -0.2
1,590,760 - +0.5
1,592,415 + HUW76_07590 0.48 +0.2
1,592,688 + HUW76_07590 0.83 +1.3

Or see this region's nucleotide sequence