Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_07515

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_07510 and HUW76_07515 are separated by 156 nucleotidesHUW76_07515 and HUW76_07520 are separated by 297 nucleotides HUW76_07510: HUW76_07510 - 2-hydroxyacid dehydrogenase, at 1,569,100 to 1,570,103 _07510 HUW76_07515: HUW76_07515 - patatin-like phospholipase family protein, at 1,570,260 to 1,571,102 _07515 HUW76_07520: HUW76_07520 - arginine--tRNA ligase, at 1,571,400 to 1,573,109 _07520 Position (kb) 1570 1571 1572Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1569.265 kb on - strand, within HUW76_07510at 1569.265 kb on - strand, within HUW76_07510at 1569.352 kb on + strand, within HUW76_07510at 1569.392 kb on - strand, within HUW76_07510at 1569.434 kb on + strand, within HUW76_07510at 1569.577 kb on - strand, within HUW76_07510at 1569.590 kb on - strand, within HUW76_07510at 1569.590 kb on - strand, within HUW76_07510at 1569.596 kb on + strand, within HUW76_07510at 1569.623 kb on + strand, within HUW76_07510at 1569.681 kb on + strand, within HUW76_07510at 1569.681 kb on + strand, within HUW76_07510at 1569.713 kb on + strand, within HUW76_07510at 1569.723 kb on + strand, within HUW76_07510at 1569.723 kb on + strand, within HUW76_07510at 1569.723 kb on + strand, within HUW76_07510at 1569.723 kb on + strand, within HUW76_07510at 1569.723 kb on - strand, within HUW76_07510at 1569.723 kb on - strand, within HUW76_07510at 1569.731 kb on - strand, within HUW76_07510at 1569.731 kb on - strand, within HUW76_07510at 1569.731 kb on - strand, within HUW76_07510at 1569.731 kb on - strand, within HUW76_07510at 1569.764 kb on + strand, within HUW76_07510at 1569.772 kb on - strand, within HUW76_07510at 1569.774 kb on + strand, within HUW76_07510at 1569.774 kb on + strand, within HUW76_07510at 1569.774 kb on + strand, within HUW76_07510at 1569.780 kb on - strand, within HUW76_07510at 1569.781 kb on + strand, within HUW76_07510at 1569.781 kb on + strand, within HUW76_07510at 1569.786 kb on + strand, within HUW76_07510at 1569.794 kb on - strand, within HUW76_07510at 1569.794 kb on - strand, within HUW76_07510at 1569.826 kb on - strand, within HUW76_07510at 1569.834 kb on - strand, within HUW76_07510at 1569.855 kb on + strand, within HUW76_07510at 1569.860 kb on + strand, within HUW76_07510at 1569.878 kb on - strand, within HUW76_07510at 1569.953 kb on - strand, within HUW76_07510at 1569.953 kb on - strand, within HUW76_07510at 1569.954 kb on - strand, within HUW76_07510at 1569.954 kb on - strand, within HUW76_07510at 1569.965 kb on - strand, within HUW76_07510at 1569.965 kb on - strand, within HUW76_07510at 1569.966 kb on - strand, within HUW76_07510at 1569.966 kb on - strand, within HUW76_07510at 1570.200 kb on + strandat 1570.200 kb on + strandat 1570.230 kb on - strandat 1570.230 kb on - strandat 1570.269 kb on + strandat 1570.309 kb on + strandat 1570.319 kb on + strandat 1570.357 kb on + strand, within HUW76_07515at 1570.357 kb on + strand, within HUW76_07515at 1570.380 kb on + strand, within HUW76_07515at 1570.380 kb on + strand, within HUW76_07515at 1570.667 kb on - strand, within HUW76_07515at 1570.680 kb on + strand, within HUW76_07515at 1570.680 kb on + strand, within HUW76_07515at 1570.680 kb on + strand, within HUW76_07515at 1570.688 kb on - strand, within HUW76_07515at 1570.692 kb on + strand, within HUW76_07515at 1570.692 kb on + strand, within HUW76_07515at 1570.692 kb on + strand, within HUW76_07515at 1570.773 kb on + strand, within HUW76_07515at 1570.773 kb on + strand, within HUW76_07515at 1570.774 kb on + strand, within HUW76_07515at 1570.774 kb on + strand, within HUW76_07515at 1570.781 kb on - strand, within HUW76_07515at 1570.822 kb on + strand, within HUW76_07515at 1570.893 kb on + strand, within HUW76_07515at 1570.893 kb on + strand, within HUW76_07515at 1570.911 kb on + strand, within HUW76_07515at 1570.913 kb on - strand, within HUW76_07515at 1570.919 kb on - strand, within HUW76_07515at 1570.919 kb on - strand, within HUW76_07515at 1570.919 kb on - strand, within HUW76_07515at 1571.019 kb on + strandat 1571.048 kb on + strandat 1571.051 kb on + strandat 1571.051 kb on + strandat 1571.051 kb on + strandat 1571.053 kb on + strandat 1571.053 kb on + strandat 1571.053 kb on + strandat 1571.053 kb on + strandat 1571.053 kb on + strandat 1571.053 kb on + strandat 1571.053 kb on + strandat 1571.061 kb on - strandat 1571.061 kb on - strandat 1571.061 kb on - strandat 1571.061 kb on - strandat 1571.061 kb on - strandat 1571.185 kb on + strandat 1571.213 kb on + strandat 1571.321 kb on + strandat 1571.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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1,569,265 - HUW76_07510 0.16 +0.8
1,569,265 - HUW76_07510 0.16 +2.5
1,569,352 + HUW76_07510 0.25 +2.6
1,569,392 - HUW76_07510 0.29 +1.0
1,569,434 + HUW76_07510 0.33 +3.4
1,569,577 - HUW76_07510 0.48 +0.3
1,569,590 - HUW76_07510 0.49 +1.3
1,569,590 - HUW76_07510 0.49 +1.6
1,569,596 + HUW76_07510 0.49 -0.4
1,569,623 + HUW76_07510 0.52 +1.3
1,569,681 + HUW76_07510 0.58 +1.9
1,569,681 + HUW76_07510 0.58 +1.0
1,569,713 + HUW76_07510 0.61 +0.4
1,569,723 + HUW76_07510 0.62 +1.6
1,569,723 + HUW76_07510 0.62 +0.8
1,569,723 + HUW76_07510 0.62 +1.3
1,569,723 + HUW76_07510 0.62 +0.4
1,569,723 - HUW76_07510 0.62 +1.3
1,569,723 - HUW76_07510 0.62 +1.2
1,569,731 - HUW76_07510 0.63 -0.0
1,569,731 - HUW76_07510 0.63 +0.9
1,569,731 - HUW76_07510 0.63 -0.3
1,569,731 - HUW76_07510 0.63 +0.9
1,569,764 + HUW76_07510 0.66 +1.7
1,569,772 - HUW76_07510 0.67 -1.2
1,569,774 + HUW76_07510 0.67 -1.1
1,569,774 + HUW76_07510 0.67 +0.6
1,569,774 + HUW76_07510 0.67 +0.8
1,569,780 - HUW76_07510 0.68 +1.0
1,569,781 + HUW76_07510 0.68 +0.7
1,569,781 + HUW76_07510 0.68 +0.4
1,569,786 + HUW76_07510 0.68 +0.5
1,569,794 - HUW76_07510 0.69 +0.3
1,569,794 - HUW76_07510 0.69 +1.3
1,569,826 - HUW76_07510 0.72 +0.4
1,569,834 - HUW76_07510 0.73 +0.9
1,569,855 + HUW76_07510 0.75 +0.9
1,569,860 + HUW76_07510 0.76 +1.0
1,569,878 - HUW76_07510 0.77 +0.7
1,569,953 - HUW76_07510 0.85 +1.5
1,569,953 - HUW76_07510 0.85 +1.4
1,569,954 - HUW76_07510 0.85 +0.6
1,569,954 - HUW76_07510 0.85 -0.3
1,569,965 - HUW76_07510 0.86 +0.9
1,569,965 - HUW76_07510 0.86 +1.8
1,569,966 - HUW76_07510 0.86 +0.8
1,569,966 - HUW76_07510 0.86 +0.6
1,570,200 + -1.3
1,570,200 + -0.3
1,570,230 - -1.1
1,570,230 - -0.8
1,570,269 + -0.3
1,570,309 + -0.6
1,570,319 + -0.2
1,570,357 + HUW76_07515 0.12 -0.1
1,570,357 + HUW76_07515 0.12 +1.3
1,570,380 + HUW76_07515 0.14 -0.5
1,570,380 + HUW76_07515 0.14 -0.8
1,570,667 - HUW76_07515 0.48 +0.6
1,570,680 + HUW76_07515 0.50 -0.7
1,570,680 + HUW76_07515 0.50 -0.8
1,570,680 + HUW76_07515 0.50 +0.9
1,570,688 - HUW76_07515 0.51 +2.5
1,570,692 + HUW76_07515 0.51 +0.1
1,570,692 + HUW76_07515 0.51 -0.2
1,570,692 + HUW76_07515 0.51 -0.5
1,570,773 + HUW76_07515 0.61 +0.1
1,570,773 + HUW76_07515 0.61 -0.7
1,570,774 + HUW76_07515 0.61 -0.6
1,570,774 + HUW76_07515 0.61 -0.7
1,570,781 - HUW76_07515 0.62 +0.8
1,570,822 + HUW76_07515 0.67 -0.1
1,570,893 + HUW76_07515 0.75 -0.9
1,570,893 + HUW76_07515 0.75 +0.2
1,570,911 + HUW76_07515 0.77 -0.4
1,570,913 - HUW76_07515 0.77 +1.1
1,570,919 - HUW76_07515 0.78 +0.3
1,570,919 - HUW76_07515 0.78 -0.4
1,570,919 - HUW76_07515 0.78 +1.7
1,571,019 + -0.3
1,571,048 + -0.6
1,571,051 + -0.8
1,571,051 + -0.1
1,571,051 + -0.2
1,571,053 + -0.1
1,571,053 + +0.4
1,571,053 + -0.1
1,571,053 + -0.9
1,571,053 + -0.1
1,571,053 + -0.4
1,571,053 + -0.2
1,571,061 - +2.4
1,571,061 - -1.5
1,571,061 - -0.6
1,571,061 - +1.2
1,571,061 - -1.8
1,571,185 + -0.4
1,571,213 + -0.6
1,571,321 + -0.6
1,571,324 + -0.4

Or see this region's nucleotide sequence