Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00135

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_00125 and HUW76_00130 are separated by 17 nucleotidesHUW76_00130 and HUW76_00135 are separated by 9 nucleotidesHUW76_00135 and HUW76_00140 are separated by 341 nucleotidesHUW76_00140 and HUW76_00145 are separated by 139 nucleotides HUW76_00125: HUW76_00125 - ATP-binding cassette domain-containing protein, at 25,930 to 27,828 _00125 HUW76_00130: HUW76_00130 - EamA family transporter, at 27,846 to 28,751 _00130 HUW76_00135: HUW76_00135 - S8 family peptidase, at 28,761 to 30,254 _00135 HUW76_00140: HUW76_00140 - YbaN family protein, at 30,596 to 30,973 _00140 HUW76_00145: HUW76_00145 - Mrp/NBP35 family ATP-binding protein, at 31,113 to 31,886 _00145 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 27.788 kb on + strandat 27.791 kb on - strandat 27.791 kb on - strandat 27.802 kb on - strandat 27.802 kb on - strandat 27.813 kb on + strandat 27.896 kb on + strandat 27.896 kb on + strandat 27.948 kb on + strand, within HUW76_00130at 27.956 kb on - strand, within HUW76_00130at 27.966 kb on - strand, within HUW76_00130at 27.992 kb on + strand, within HUW76_00130at 27.992 kb on + strand, within HUW76_00130at 27.992 kb on + strand, within HUW76_00130at 27.992 kb on + strand, within HUW76_00130at 27.992 kb on + strand, within HUW76_00130at 27.993 kb on - strand, within HUW76_00130at 27.994 kb on + strand, within HUW76_00130at 28.000 kb on - strand, within HUW76_00130at 28.000 kb on - strand, within HUW76_00130at 28.000 kb on - strand, within HUW76_00130at 28.061 kb on - strand, within HUW76_00130at 28.143 kb on + strand, within HUW76_00130at 28.173 kb on - strand, within HUW76_00130at 28.176 kb on + strand, within HUW76_00130at 28.226 kb on - strand, within HUW76_00130at 28.226 kb on - strand, within HUW76_00130at 28.226 kb on - strand, within HUW76_00130at 28.228 kb on - strand, within HUW76_00130at 28.228 kb on - strand, within HUW76_00130at 28.236 kb on - strand, within HUW76_00130at 28.254 kb on + strand, within HUW76_00130at 28.262 kb on - strand, within HUW76_00130at 28.262 kb on - strand, within HUW76_00130at 28.282 kb on - strand, within HUW76_00130at 28.590 kb on + strand, within HUW76_00130at 28.628 kb on + strand, within HUW76_00130at 28.631 kb on - strand, within HUW76_00130at 28.631 kb on - strand, within HUW76_00130at 28.631 kb on - strand, within HUW76_00130at 28.636 kb on - strand, within HUW76_00130at 28.636 kb on - strand, within HUW76_00130at 28.640 kb on - strand, within HUW76_00130at 28.642 kb on + strand, within HUW76_00130at 28.650 kb on - strand, within HUW76_00130at 28.700 kb on + strandat 28.700 kb on + strandat 28.761 kb on - strandat 28.761 kb on - strandat 28.761 kb on - strandat 28.761 kb on - strandat 28.803 kb on + strandat 28.821 kb on - strandat 29.041 kb on + strand, within HUW76_00135at 29.049 kb on - strand, within HUW76_00135at 29.101 kb on - strand, within HUW76_00135at 29.101 kb on - strand, within HUW76_00135at 29.155 kb on + strand, within HUW76_00135at 29.155 kb on + strand, within HUW76_00135at 29.172 kb on + strand, within HUW76_00135at 29.180 kb on + strand, within HUW76_00135at 29.180 kb on + strand, within HUW76_00135at 29.193 kb on - strand, within HUW76_00135at 29.204 kb on + strand, within HUW76_00135at 29.365 kb on + strand, within HUW76_00135at 29.387 kb on + strand, within HUW76_00135at 29.387 kb on + strand, within HUW76_00135at 29.390 kb on + strand, within HUW76_00135at 29.465 kb on - strand, within HUW76_00135at 29.467 kb on + strand, within HUW76_00135at 29.467 kb on + strand, within HUW76_00135at 29.467 kb on + strand, within HUW76_00135at 29.467 kb on + strand, within HUW76_00135at 29.489 kb on - strand, within HUW76_00135at 29.489 kb on - strand, within HUW76_00135at 29.535 kb on + strand, within HUW76_00135at 29.535 kb on + strand, within HUW76_00135at 29.545 kb on + strand, within HUW76_00135at 29.545 kb on + strand, within HUW76_00135at 29.553 kb on - strand, within HUW76_00135at 29.561 kb on + strand, within HUW76_00135at 29.569 kb on - strand, within HUW76_00135at 29.569 kb on - strand, within HUW76_00135at 29.591 kb on - strand, within HUW76_00135at 29.591 kb on - strand, within HUW76_00135at 29.591 kb on - strand, within HUW76_00135at 29.591 kb on - strand, within HUW76_00135at 29.733 kb on + strand, within HUW76_00135at 29.733 kb on + strand, within HUW76_00135at 29.805 kb on + strand, within HUW76_00135at 29.837 kb on + strand, within HUW76_00135at 29.837 kb on + strand, within HUW76_00135at 29.845 kb on - strand, within HUW76_00135at 29.853 kb on - strand, within HUW76_00135at 29.884 kb on + strand, within HUW76_00135at 29.892 kb on - strand, within HUW76_00135at 29.909 kb on + strand, within HUW76_00135at 29.909 kb on + strand, within HUW76_00135at 29.909 kb on + strand, within HUW76_00135at 29.912 kb on + strand, within HUW76_00135at 29.912 kb on + strand, within HUW76_00135at 29.920 kb on - strand, within HUW76_00135at 29.946 kb on - strand, within HUW76_00135at 30.007 kb on + strand, within HUW76_00135at 30.007 kb on + strand, within HUW76_00135at 30.008 kb on + strand, within HUW76_00135at 30.008 kb on + strand, within HUW76_00135at 30.016 kb on - strand, within HUW76_00135at 30.018 kb on + strand, within HUW76_00135at 30.018 kb on + strand, within HUW76_00135at 30.018 kb on + strand, within HUW76_00135at 30.048 kb on + strand, within HUW76_00135at 30.048 kb on + strand, within HUW76_00135at 30.205 kb on - strandat 30.367 kb on + strandat 30.368 kb on + strandat 30.376 kb on - strandat 30.376 kb on - strandat 30.465 kb on - strandat 30.475 kb on - strandat 30.475 kb on - strandat 30.573 kb on + strandat 30.623 kb on - strandat 30.623 kb on - strandat 30.632 kb on + strandat 30.633 kb on - strandat 30.633 kb on - strandat 30.633 kb on - strandat 30.633 kb on - strandat 30.633 kb on - strandat 30.633 kb on - strandat 30.633 kb on - strandat 30.650 kb on + strand, within HUW76_00140at 30.650 kb on + strand, within HUW76_00140at 30.707 kb on + strand, within HUW76_00140at 30.707 kb on + strand, within HUW76_00140at 30.715 kb on - strand, within HUW76_00140at 30.715 kb on - strand, within HUW76_00140at 30.715 kb on - strand, within HUW76_00140at 30.720 kb on + strand, within HUW76_00140at 30.728 kb on - strand, within HUW76_00140at 30.730 kb on + strand, within HUW76_00140at 30.735 kb on + strand, within HUW76_00140at 30.735 kb on + strand, within HUW76_00140at 30.735 kb on + strand, within HUW76_00140at 30.735 kb on + strand, within HUW76_00140at 30.738 kb on - strand, within HUW76_00140at 30.738 kb on - strand, within HUW76_00140at 30.743 kb on - strand, within HUW76_00140at 30.755 kb on + strand, within HUW76_00140at 30.755 kb on + strand, within HUW76_00140at 30.761 kb on + strand, within HUW76_00140at 30.761 kb on + strand, within HUW76_00140at 30.761 kb on + strand, within HUW76_00140at 30.762 kb on + strand, within HUW76_00140at 30.763 kb on - strand, within HUW76_00140at 30.763 kb on - strand, within HUW76_00140at 30.763 kb on - strand, within HUW76_00140at 30.769 kb on - strand, within HUW76_00140at 30.769 kb on - strand, within HUW76_00140at 30.769 kb on - strand, within HUW76_00140at 30.769 kb on - strand, within HUW76_00140at 30.849 kb on + strand, within HUW76_00140at 30.849 kb on + strand, within HUW76_00140at 30.880 kb on - strand, within HUW76_00140at 30.927 kb on + strand, within HUW76_00140at 30.934 kb on + strand, within HUW76_00140at 30.935 kb on - strand, within HUW76_00140at 30.935 kb on - strand, within HUW76_00140at 30.985 kb on + strandat 30.985 kb on + strandat 30.993 kb on - strandat 30.993 kb on - strandat 31.070 kb on + strandat 31.078 kb on - strandat 31.078 kb on - strandat 31.129 kb on + strandat 31.173 kb on + strandat 31.197 kb on + strand, within HUW76_00145at 31.197 kb on + strand, within HUW76_00145at 31.213 kb on + strand, within HUW76_00145at 31.213 kb on + strand, within HUW76_00145at 31.223 kb on + strand, within HUW76_00145

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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27,788 + +1.1
27,791 - +1.6
27,791 - -0.1
27,802 - +0.3
27,802 - -0.2
27,813 + +1.5
27,896 + -0.1
27,896 + -1.0
27,948 + HUW76_00130 0.11 +0.5
27,956 - HUW76_00130 0.12 -0.6
27,966 - HUW76_00130 0.13 -0.2
27,992 + HUW76_00130 0.16 -0.9
27,992 + HUW76_00130 0.16 -1.8
27,992 + HUW76_00130 0.16 -1.1
27,992 + HUW76_00130 0.16 -0.7
27,992 + HUW76_00130 0.16 +1.2
27,993 - HUW76_00130 0.16 -0.6
27,994 + HUW76_00130 0.16 +0.0
28,000 - HUW76_00130 0.17 -0.4
28,000 - HUW76_00130 0.17 -0.4
28,000 - HUW76_00130 0.17 -0.3
28,061 - HUW76_00130 0.24 -0.3
28,143 + HUW76_00130 0.33 -0.4
28,173 - HUW76_00130 0.36 -0.9
28,176 + HUW76_00130 0.36 +0.8
28,226 - HUW76_00130 0.42 -0.7
28,226 - HUW76_00130 0.42 +0.4
28,226 - HUW76_00130 0.42 +0.5
28,228 - HUW76_00130 0.42 -0.1
28,228 - HUW76_00130 0.42 -0.4
28,236 - HUW76_00130 0.43 -0.5
28,254 + HUW76_00130 0.45 +0.4
28,262 - HUW76_00130 0.46 +1.2
28,262 - HUW76_00130 0.46 -0.2
28,282 - HUW76_00130 0.48 -0.7
28,590 + HUW76_00130 0.82 +0.9
28,628 + HUW76_00130 0.86 +1.2
28,631 - HUW76_00130 0.87 -0.4
28,631 - HUW76_00130 0.87 -0.4
28,631 - HUW76_00130 0.87 -0.6
28,636 - HUW76_00130 0.87 -0.9
28,636 - HUW76_00130 0.87 -0.2
28,640 - HUW76_00130 0.88 -0.1
28,642 + HUW76_00130 0.88 +0.1
28,650 - HUW76_00130 0.89 -0.3
28,700 + +0.5
28,700 + +0.8
28,761 - -0.5
28,761 - -0.0
28,761 - +0.8
28,761 - +0.1
28,803 + -0.9
28,821 - -0.2
29,041 + HUW76_00135 0.19 +0.5
29,049 - HUW76_00135 0.19 -0.8
29,101 - HUW76_00135 0.23 +1.3
29,101 - HUW76_00135 0.23 -0.3
29,155 + HUW76_00135 0.26 -0.3
29,155 + HUW76_00135 0.26 +0.5
29,172 + HUW76_00135 0.28 -0.3
29,180 + HUW76_00135 0.28 +0.5
29,180 + HUW76_00135 0.28 +0.5
29,193 - HUW76_00135 0.29 +0.7
29,204 + HUW76_00135 0.30 +1.3
29,365 + HUW76_00135 0.40 +0.4
29,387 + HUW76_00135 0.42 -0.3
29,387 + HUW76_00135 0.42 +0.4
29,390 + HUW76_00135 0.42 +0.2
29,465 - HUW76_00135 0.47 -0.0
29,467 + HUW76_00135 0.47 +0.4
29,467 + HUW76_00135 0.47 -0.5
29,467 + HUW76_00135 0.47 -0.6
29,467 + HUW76_00135 0.47 +0.3
29,489 - HUW76_00135 0.49 -0.7
29,489 - HUW76_00135 0.49 -0.5
29,535 + HUW76_00135 0.52 +0.9
29,535 + HUW76_00135 0.52 +0.8
29,545 + HUW76_00135 0.52 +1.9
29,545 + HUW76_00135 0.52 -0.1
29,553 - HUW76_00135 0.53 -0.1
29,561 + HUW76_00135 0.54 +0.5
29,569 - HUW76_00135 0.54 -0.2
29,569 - HUW76_00135 0.54 -0.5
29,591 - HUW76_00135 0.56 -0.7
29,591 - HUW76_00135 0.56 -0.7
29,591 - HUW76_00135 0.56 -0.5
29,591 - HUW76_00135 0.56 -0.1
29,733 + HUW76_00135 0.65 -0.3
29,733 + HUW76_00135 0.65 +0.1
29,805 + HUW76_00135 0.70 +0.1
29,837 + HUW76_00135 0.72 -2.5
29,837 + HUW76_00135 0.72 -0.5
29,845 - HUW76_00135 0.73 +0.2
29,853 - HUW76_00135 0.73 -1.0
29,884 + HUW76_00135 0.75 +0.4
29,892 - HUW76_00135 0.76 -0.1
29,909 + HUW76_00135 0.77 +0.7
29,909 + HUW76_00135 0.77 +1.4
29,909 + HUW76_00135 0.77 +1.0
29,912 + HUW76_00135 0.77 -0.2
29,912 + HUW76_00135 0.77 -0.0
29,920 - HUW76_00135 0.78 +0.1
29,946 - HUW76_00135 0.79 -0.3
30,007 + HUW76_00135 0.83 +0.6
30,007 + HUW76_00135 0.83 +1.5
30,008 + HUW76_00135 0.83 +0.8
30,008 + HUW76_00135 0.83 +0.2
30,016 - HUW76_00135 0.84 +0.1
30,018 + HUW76_00135 0.84 +0.6
30,018 + HUW76_00135 0.84 +0.5
30,018 + HUW76_00135 0.84 +0.1
30,048 + HUW76_00135 0.86 +0.7
30,048 + HUW76_00135 0.86 +0.6
30,205 - -0.4
30,367 + -0.2
30,368 + -0.5
30,376 - -0.4
30,376 - -0.3
30,465 - +0.1
30,475 - -1.4
30,475 - -0.8
30,573 + +0.1
30,623 - +1.6
30,623 - +0.1
30,632 + -0.2
30,633 - -0.6
30,633 - -1.6
30,633 - -0.1
30,633 - +0.3
30,633 - +0.4
30,633 - -0.5
30,633 - -0.2
30,650 + HUW76_00140 0.14 -0.6
30,650 + HUW76_00140 0.14 +0.5
30,707 + HUW76_00140 0.29 +1.5
30,707 + HUW76_00140 0.29 +0.1
30,715 - HUW76_00140 0.31 -0.5
30,715 - HUW76_00140 0.31 -0.6
30,715 - HUW76_00140 0.31 -0.2
30,720 + HUW76_00140 0.33 -0.0
30,728 - HUW76_00140 0.35 +0.1
30,730 + HUW76_00140 0.35 +0.4
30,735 + HUW76_00140 0.37 +1.8
30,735 + HUW76_00140 0.37 -0.2
30,735 + HUW76_00140 0.37 +1.2
30,735 + HUW76_00140 0.37 +0.1
30,738 - HUW76_00140 0.38 -0.5
30,738 - HUW76_00140 0.38 -0.2
30,743 - HUW76_00140 0.39 -0.3
30,755 + HUW76_00140 0.42 +0.0
30,755 + HUW76_00140 0.42 +2.2
30,761 + HUW76_00140 0.44 +0.1
30,761 + HUW76_00140 0.44 -0.6
30,761 + HUW76_00140 0.44 +1.0
30,762 + HUW76_00140 0.44 -0.0
30,763 - HUW76_00140 0.44 -0.1
30,763 - HUW76_00140 0.44 -0.6
30,763 - HUW76_00140 0.44 -0.1
30,769 - HUW76_00140 0.46 +0.3
30,769 - HUW76_00140 0.46 +0.5
30,769 - HUW76_00140 0.46 -0.9
30,769 - HUW76_00140 0.46 +0.4
30,849 + HUW76_00140 0.67 +0.1
30,849 + HUW76_00140 0.67 +0.1
30,880 - HUW76_00140 0.75 +0.0
30,927 + HUW76_00140 0.88 -0.8
30,934 + HUW76_00140 0.89 -0.4
30,935 - HUW76_00140 0.90 -0.0
30,935 - HUW76_00140 0.90 -0.1
30,985 + +0.0
30,985 + -0.4
30,993 - -1.5
30,993 - -0.6
31,070 + -0.5
31,078 - +0.3
31,078 - -0.1
31,129 + -0.5
31,173 + +0.6
31,197 + HUW76_00145 0.11 -0.6
31,197 + HUW76_00145 0.11 +0.3
31,213 + HUW76_00145 0.13 +0.2
31,213 + HUW76_00145 0.13 -0.5
31,223 + HUW76_00145 0.14 -1.0

Or see this region's nucleotide sequence