Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_10110

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_10105 and HUW76_10110 are separated by 306 nucleotidesHUW76_10110 and HUW76_10115 overlap by 4 nucleotides HUW76_10105: HUW76_10105 - endolytic transglycosylase MltG, at 2,111,447 to 2,112,379 _10105 HUW76_10110: HUW76_10110 - tRNA lysidine(34) synthetase TilS, at 2,112,686 to 2,114,032 _10110 HUW76_10115: HUW76_10115 - ATP-dependent zinc metalloprotease FtsH, at 2,114,029 to 2,116,200 _10115 Position (kb) 2112 2113 2114 2115Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2111.725 kb on + strand, within HUW76_10105at 2111.725 kb on + strand, within HUW76_10105at 2111.725 kb on + strand, within HUW76_10105at 2111.725 kb on + strand, within HUW76_10105at 2111.755 kb on + strand, within HUW76_10105at 2111.975 kb on + strand, within HUW76_10105at 2112.024 kb on + strand, within HUW76_10105at 2112.024 kb on + strand, within HUW76_10105at 2112.032 kb on + strand, within HUW76_10105at 2112.032 kb on + strand, within HUW76_10105at 2112.194 kb on + strand, within HUW76_10105at 2112.194 kb on + strand, within HUW76_10105at 2112.255 kb on + strand, within HUW76_10105at 2112.255 kb on + strand, within HUW76_10105at 2112.271 kb on + strand, within HUW76_10105at 2112.271 kb on + strand, within HUW76_10105at 2112.313 kb on + strandat 2112.516 kb on + strandat 2112.548 kb on + strandat 2114.013 kb on + strandat 2114.013 kb on + strandat 2114.076 kb on + strandat 2114.261 kb on - strand, within HUW76_10115at 2114.288 kb on + strand, within HUW76_10115at 2114.288 kb on + strand, within HUW76_10115at 2114.335 kb on + strand, within HUW76_10115at 2114.429 kb on + strand, within HUW76_10115at 2114.429 kb on + strand, within HUW76_10115at 2114.501 kb on + strand, within HUW76_10115at 2114.599 kb on + strand, within HUW76_10115at 2114.678 kb on + strand, within HUW76_10115at 2114.678 kb on + strand, within HUW76_10115at 2114.678 kb on + strand, within HUW76_10115at 2114.711 kb on + strand, within HUW76_10115at 2114.725 kb on + strand, within HUW76_10115at 2114.769 kb on + strand, within HUW76_10115at 2114.778 kb on + strand, within HUW76_10115at 2114.778 kb on + strand, within HUW76_10115at 2114.778 kb on + strand, within HUW76_10115at 2114.778 kb on + strand, within HUW76_10115at 2114.778 kb on + strand, within HUW76_10115at 2114.820 kb on + strand, within HUW76_10115at 2114.884 kb on + strand, within HUW76_10115at 2114.997 kb on + strand, within HUW76_10115at 2114.997 kb on + strand, within HUW76_10115at 2114.997 kb on + strand, within HUW76_10115at 2114.997 kb on + strand, within HUW76_10115at 2115.005 kb on - strand, within HUW76_10115at 2115.006 kb on + strand, within HUW76_10115at 2115.007 kb on + strand, within HUW76_10115at 2115.007 kb on + strand, within HUW76_10115at 2115.031 kb on + strand, within HUW76_10115

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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2,111,725 + HUW76_10105 0.30 -2.1
2,111,725 + HUW76_10105 0.30 -0.5
2,111,725 + HUW76_10105 0.30 +0.5
2,111,725 + HUW76_10105 0.30 -1.1
2,111,755 + HUW76_10105 0.33 -0.5
2,111,975 + HUW76_10105 0.57 -0.4
2,112,024 + HUW76_10105 0.62 -0.7
2,112,024 + HUW76_10105 0.62 +0.2
2,112,032 + HUW76_10105 0.63 +0.5
2,112,032 + HUW76_10105 0.63 -1.6
2,112,194 + HUW76_10105 0.80 -0.9
2,112,194 + HUW76_10105 0.80 -1.6
2,112,255 + HUW76_10105 0.87 -0.4
2,112,255 + HUW76_10105 0.87 -1.1
2,112,271 + HUW76_10105 0.88 -1.1
2,112,271 + HUW76_10105 0.88 +0.1
2,112,313 + -0.5
2,112,516 + -0.0
2,112,548 + -0.0
2,114,013 + -0.6
2,114,013 + +0.1
2,114,076 + +1.9
2,114,261 - HUW76_10115 0.11 +2.6
2,114,288 + HUW76_10115 0.12 +4.5
2,114,288 + HUW76_10115 0.12 +0.9
2,114,335 + HUW76_10115 0.14 +3.2
2,114,429 + HUW76_10115 0.18 +0.5
2,114,429 + HUW76_10115 0.18 +3.0
2,114,501 + HUW76_10115 0.22 +3.4
2,114,599 + HUW76_10115 0.26 +2.6
2,114,678 + HUW76_10115 0.30 +4.6
2,114,678 + HUW76_10115 0.30 +4.1
2,114,678 + HUW76_10115 0.30 +2.6
2,114,711 + HUW76_10115 0.31 +0.3
2,114,725 + HUW76_10115 0.32 +2.5
2,114,769 + HUW76_10115 0.34 +4.5
2,114,778 + HUW76_10115 0.34 +1.9
2,114,778 + HUW76_10115 0.34 +1.0
2,114,778 + HUW76_10115 0.34 +3.9
2,114,778 + HUW76_10115 0.34 +5.1
2,114,778 + HUW76_10115 0.34 +3.6
2,114,820 + HUW76_10115 0.36 +5.0
2,114,884 + HUW76_10115 0.39 +5.0
2,114,997 + HUW76_10115 0.45 +5.4
2,114,997 + HUW76_10115 0.45 +3.1
2,114,997 + HUW76_10115 0.45 +2.7
2,114,997 + HUW76_10115 0.45 +1.2
2,115,005 - HUW76_10115 0.45 +3.3
2,115,006 + HUW76_10115 0.45 +3.2
2,115,007 + HUW76_10115 0.45 +0.9
2,115,007 + HUW76_10115 0.45 +3.7
2,115,031 + HUW76_10115 0.46 +0.9

Or see this region's nucleotide sequence