Experiment: Time0_glycerolstock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_07700 and HUW76_07705 are separated by 23 nucleotides HUW76_07705 and HUW76_07710 are separated by 17 nucleotides HUW76_07710 and HUW76_07715 are separated by 92 nucleotides HUW76_07715 and HUW76_07720 are separated by 10 nucleotides
HUW76_07700: HUW76_07700 - lysine--tRNA ligase, at 1,615,392 to 1,616,873
_07700
HUW76_07705: HUW76_07705 - hypothetical protein, at 1,616,897 to 1,618,168
_07705
HUW76_07710: HUW76_07710 - hypothetical protein, at 1,618,186 to 1,618,506
_07710
HUW76_07715: HUW76_07715 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,618,599 to 1,619,066
_07715
HUW76_07720: HUW76_07720 - DNA mismatch repair endonuclease MutL, at 1,619,077 to 1,621,011
_07720
Position (kb)
1616
1617
1618
1619 Strain fitness (log2 ratio)
-1
0
1
2 at 1616.962 kb on - strand at 1617.224 kb on - strand, within HUW76_07705 at 1617.239 kb on - strand, within HUW76_07705 at 1617.486 kb on + strand, within HUW76_07705 at 1618.416 kb on - strand, within HUW76_07710 at 1618.416 kb on - strand, within HUW76_07710 at 1618.424 kb on - strand, within HUW76_07710 at 1618.424 kb on - strand, within HUW76_07710 at 1618.580 kb on + strand at 1618.754 kb on + strand, within HUW76_07715 at 1618.774 kb on - strand, within HUW76_07715 at 1618.776 kb on + strand, within HUW76_07715 at 1618.867 kb on + strand, within HUW76_07715 at 1618.895 kb on + strand, within HUW76_07715 at 1618.900 kb on + strand, within HUW76_07715 at 1618.903 kb on - strand, within HUW76_07715 at 1618.927 kb on + strand, within HUW76_07715 at 1618.941 kb on + strand, within HUW76_07715 at 1618.949 kb on - strand, within HUW76_07715 at 1618.963 kb on + strand, within HUW76_07715 at 1618.963 kb on + strand, within HUW76_07715 at 1618.964 kb on + strand, within HUW76_07715 at 1618.972 kb on - strand, within HUW76_07715 at 1618.972 kb on - strand, within HUW76_07715 at 1618.972 kb on - strand, within HUW76_07715 at 1618.972 kb on - strand, within HUW76_07715 at 1618.972 kb on - strand, within HUW76_07715 at 1619.116 kb on + strand at 1619.116 kb on + strand at 1619.124 kb on - strand at 1619.124 kb on - strand at 1619.137 kb on + strand at 1619.137 kb on + strand at 1619.145 kb on - strand at 1619.147 kb on + strand at 1619.152 kb on - strand at 1619.155 kb on + strand at 1619.155 kb on + strand at 1619.155 kb on + strand at 1619.155 kb on - strand at 1619.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_glycerolstock remove 1,616,962 - -0.1 1,617,224 - HUW76_07705 0.26 +0.9 1,617,239 - HUW76_07705 0.27 -0.9 1,617,486 + HUW76_07705 0.46 +1.9 1,618,416 - HUW76_07710 0.72 -1.1 1,618,416 - HUW76_07710 0.72 -1.2 1,618,424 - HUW76_07710 0.74 -1.1 1,618,424 - HUW76_07710 0.74 -0.1 1,618,580 + +0.2 1,618,754 + HUW76_07715 0.33 +0.0 1,618,774 - HUW76_07715 0.37 -0.5 1,618,776 + HUW76_07715 0.38 +0.9 1,618,867 + HUW76_07715 0.57 -0.3 1,618,895 + HUW76_07715 0.63 +0.6 1,618,900 + HUW76_07715 0.64 +1.2 1,618,903 - HUW76_07715 0.65 +0.0 1,618,927 + HUW76_07715 0.70 +2.0 1,618,941 + HUW76_07715 0.73 +1.2 1,618,949 - HUW76_07715 0.75 -0.0 1,618,963 + HUW76_07715 0.78 -0.3 1,618,963 + HUW76_07715 0.78 +0.4 1,618,964 + HUW76_07715 0.78 +0.8 1,618,972 - HUW76_07715 0.80 -0.6 1,618,972 - HUW76_07715 0.80 -1.6 1,618,972 - HUW76_07715 0.80 -0.6 1,618,972 - HUW76_07715 0.80 -0.6 1,618,972 - HUW76_07715 0.80 -0.3 1,619,116 + -0.2 1,619,116 + +0.3 1,619,124 - +0.4 1,619,124 - -0.4 1,619,137 + +0.1 1,619,137 + +0.1 1,619,145 - -0.6 1,619,147 + +0.4 1,619,152 - -0.5 1,619,155 + +0.6 1,619,155 + +0.5 1,619,155 + +2.3 1,619,155 - -1.3 1,619,155 - +0.7
Or see this region's nucleotide sequence