Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_07705

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_07700 and HUW76_07705 are separated by 23 nucleotidesHUW76_07705 and HUW76_07710 are separated by 17 nucleotidesHUW76_07710 and HUW76_07715 are separated by 92 nucleotidesHUW76_07715 and HUW76_07720 are separated by 10 nucleotides HUW76_07700: HUW76_07700 - lysine--tRNA ligase, at 1,615,392 to 1,616,873 _07700 HUW76_07705: HUW76_07705 - hypothetical protein, at 1,616,897 to 1,618,168 _07705 HUW76_07710: HUW76_07710 - hypothetical protein, at 1,618,186 to 1,618,506 _07710 HUW76_07715: HUW76_07715 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,618,599 to 1,619,066 _07715 HUW76_07720: HUW76_07720 - DNA mismatch repair endonuclease MutL, at 1,619,077 to 1,621,011 _07720 Position (kb) 1616 1617 1618 1619Strain fitness (log2 ratio) -1 0 1 2at 1616.962 kb on - strandat 1617.224 kb on - strand, within HUW76_07705at 1617.239 kb on - strand, within HUW76_07705at 1617.486 kb on + strand, within HUW76_07705at 1618.416 kb on - strand, within HUW76_07710at 1618.416 kb on - strand, within HUW76_07710at 1618.424 kb on - strand, within HUW76_07710at 1618.424 kb on - strand, within HUW76_07710at 1618.580 kb on + strandat 1618.754 kb on + strand, within HUW76_07715at 1618.774 kb on - strand, within HUW76_07715at 1618.776 kb on + strand, within HUW76_07715at 1618.867 kb on + strand, within HUW76_07715at 1618.895 kb on + strand, within HUW76_07715at 1618.900 kb on + strand, within HUW76_07715at 1618.903 kb on - strand, within HUW76_07715at 1618.927 kb on + strand, within HUW76_07715at 1618.941 kb on + strand, within HUW76_07715at 1618.949 kb on - strand, within HUW76_07715at 1618.963 kb on + strand, within HUW76_07715at 1618.963 kb on + strand, within HUW76_07715at 1618.964 kb on + strand, within HUW76_07715at 1618.972 kb on - strand, within HUW76_07715at 1618.972 kb on - strand, within HUW76_07715at 1618.972 kb on - strand, within HUW76_07715at 1618.972 kb on - strand, within HUW76_07715at 1618.972 kb on - strand, within HUW76_07715at 1619.116 kb on + strandat 1619.116 kb on + strandat 1619.124 kb on - strandat 1619.124 kb on - strandat 1619.137 kb on + strandat 1619.137 kb on + strandat 1619.145 kb on - strandat 1619.147 kb on + strandat 1619.152 kb on - strandat 1619.155 kb on + strandat 1619.155 kb on + strandat 1619.155 kb on + strandat 1619.155 kb on - strandat 1619.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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1,616,962 - -0.1
1,617,224 - HUW76_07705 0.26 +0.9
1,617,239 - HUW76_07705 0.27 -0.9
1,617,486 + HUW76_07705 0.46 +1.9
1,618,416 - HUW76_07710 0.72 -1.1
1,618,416 - HUW76_07710 0.72 -1.2
1,618,424 - HUW76_07710 0.74 -1.1
1,618,424 - HUW76_07710 0.74 -0.1
1,618,580 + +0.2
1,618,754 + HUW76_07715 0.33 +0.0
1,618,774 - HUW76_07715 0.37 -0.5
1,618,776 + HUW76_07715 0.38 +0.9
1,618,867 + HUW76_07715 0.57 -0.3
1,618,895 + HUW76_07715 0.63 +0.6
1,618,900 + HUW76_07715 0.64 +1.2
1,618,903 - HUW76_07715 0.65 +0.0
1,618,927 + HUW76_07715 0.70 +2.0
1,618,941 + HUW76_07715 0.73 +1.2
1,618,949 - HUW76_07715 0.75 -0.0
1,618,963 + HUW76_07715 0.78 -0.3
1,618,963 + HUW76_07715 0.78 +0.4
1,618,964 + HUW76_07715 0.78 +0.8
1,618,972 - HUW76_07715 0.80 -0.6
1,618,972 - HUW76_07715 0.80 -1.6
1,618,972 - HUW76_07715 0.80 -0.6
1,618,972 - HUW76_07715 0.80 -0.6
1,618,972 - HUW76_07715 0.80 -0.3
1,619,116 + -0.2
1,619,116 + +0.3
1,619,124 - +0.4
1,619,124 - -0.4
1,619,137 + +0.1
1,619,137 + +0.1
1,619,145 - -0.6
1,619,147 + +0.4
1,619,152 - -0.5
1,619,155 + +0.6
1,619,155 + +0.5
1,619,155 + +2.3
1,619,155 - -1.3
1,619,155 - +0.7

Or see this region's nucleotide sequence