Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_07600

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_07590 and HUW76_07595 are separated by 23 nucleotidesHUW76_07595 and HUW76_07600 are separated by 25 nucleotidesHUW76_07600 and HUW76_07605 are separated by 376 nucleotides HUW76_07590: HUW76_07590 - DUF368 domain-containing protein, at 1,592,042 to 1,592,818 _07590 HUW76_07595: HUW76_07595 - prolipoprotein diacylglyceryl transferase, at 1,592,842 to 1,593,729 _07595 HUW76_07600: HUW76_07600 - Glu/Leu/Phe/Val dehydrogenase, at 1,593,755 to 1,595,017 _07600 HUW76_07605: HUW76_07605 - lactate dehydrogenase, at 1,595,394 to 1,596,404 _07605 Position (kb) 1593 1594 1595 1596Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1593.642 kb on + strandat 1593.642 kb on + strandat 1593.730 kb on + strandat 1593.732 kb on - strandat 1593.740 kb on - strandat 1593.740 kb on - strandat 1593.774 kb on - strandat 1593.801 kb on + strandat 1593.801 kb on + strandat 1593.816 kb on - strandat 1593.816 kb on - strandat 1593.878 kb on - strandat 1593.878 kb on - strandat 1593.898 kb on + strand, within HUW76_07600at 1593.959 kb on - strand, within HUW76_07600at 1593.959 kb on - strand, within HUW76_07600at 1593.996 kb on - strand, within HUW76_07600at 1593.996 kb on - strand, within HUW76_07600at 1594.000 kb on + strand, within HUW76_07600at 1594.008 kb on - strand, within HUW76_07600at 1594.008 kb on - strand, within HUW76_07600at 1594.008 kb on - strand, within HUW76_07600at 1594.041 kb on - strand, within HUW76_07600at 1594.060 kb on - strand, within HUW76_07600at 1594.139 kb on - strand, within HUW76_07600at 1594.152 kb on - strand, within HUW76_07600at 1594.152 kb on - strand, within HUW76_07600at 1594.152 kb on - strand, within HUW76_07600at 1594.160 kb on - strand, within HUW76_07600at 1594.202 kb on + strand, within HUW76_07600at 1594.221 kb on - strand, within HUW76_07600at 1594.336 kb on - strand, within HUW76_07600at 1594.336 kb on - strand, within HUW76_07600at 1594.369 kb on - strand, within HUW76_07600at 1594.369 kb on - strand, within HUW76_07600at 1594.369 kb on - strand, within HUW76_07600at 1594.383 kb on + strand, within HUW76_07600at 1594.404 kb on + strand, within HUW76_07600at 1594.426 kb on - strand, within HUW76_07600at 1594.426 kb on - strand, within HUW76_07600at 1594.437 kb on - strand, within HUW76_07600at 1594.437 kb on - strand, within HUW76_07600at 1594.444 kb on - strand, within HUW76_07600at 1594.444 kb on - strand, within HUW76_07600at 1594.526 kb on - strand, within HUW76_07600at 1594.526 kb on - strand, within HUW76_07600at 1594.624 kb on + strand, within HUW76_07600at 1594.646 kb on - strand, within HUW76_07600at 1594.678 kb on + strand, within HUW76_07600at 1594.703 kb on - strand, within HUW76_07600at 1594.758 kb on + strand, within HUW76_07600at 1594.766 kb on - strand, within HUW76_07600at 1594.766 kb on - strand, within HUW76_07600at 1594.788 kb on - strand, within HUW76_07600at 1594.788 kb on - strand, within HUW76_07600at 1594.804 kb on - strand, within HUW76_07600at 1594.820 kb on - strand, within HUW76_07600at 1594.820 kb on - strand, within HUW76_07600at 1594.826 kb on + strand, within HUW76_07600at 1594.831 kb on + strand, within HUW76_07600at 1594.831 kb on + strand, within HUW76_07600at 1594.831 kb on + strand, within HUW76_07600at 1594.834 kb on - strand, within HUW76_07600at 1594.834 kb on - strand, within HUW76_07600at 1594.839 kb on - strand, within HUW76_07600at 1594.839 kb on - strand, within HUW76_07600at 1594.839 kb on - strand, within HUW76_07600at 1594.839 kb on - strand, within HUW76_07600at 1594.844 kb on - strand, within HUW76_07600at 1594.844 kb on - strand, within HUW76_07600at 1594.844 kb on - strand, within HUW76_07600at 1594.844 kb on - strand, within HUW76_07600at 1594.933 kb on - strandat 1594.933 kb on - strandat 1594.933 kb on - strandat 1594.933 kb on - strandat 1594.947 kb on - strandat 1594.993 kb on - strandat 1594.993 kb on - strandat 1594.994 kb on - strandat 1594.994 kb on - strandat 1594.994 kb on - strandat 1594.997 kb on + strandat 1595.005 kb on - strandat 1595.017 kb on + strandat 1595.025 kb on - strandat 1595.025 kb on - strandat 1595.025 kb on - strandat 1595.413 kb on + strandat 1595.413 kb on + strandat 1595.421 kb on - strandat 1595.453 kb on - strandat 1595.536 kb on + strand, within HUW76_07605at 1595.536 kb on + strand, within HUW76_07605at 1595.536 kb on + strand, within HUW76_07605at 1595.536 kb on + strand, within HUW76_07605at 1595.547 kb on + strand, within HUW76_07605at 1595.574 kb on + strand, within HUW76_07605at 1595.574 kb on + strand, within HUW76_07605at 1595.591 kb on + strand, within HUW76_07605at 1595.591 kb on + strand, within HUW76_07605at 1595.591 kb on - strand, within HUW76_07605at 1595.599 kb on - strand, within HUW76_07605at 1595.607 kb on - strand, within HUW76_07605at 1595.607 kb on - strand, within HUW76_07605at 1595.623 kb on - strand, within HUW76_07605at 1595.637 kb on - strand, within HUW76_07605at 1595.642 kb on - strand, within HUW76_07605at 1595.642 kb on - strand, within HUW76_07605at 1595.698 kb on - strand, within HUW76_07605at 1595.698 kb on - strand, within HUW76_07605at 1595.732 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.756 kb on + strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.764 kb on - strand, within HUW76_07605at 1595.823 kb on + strand, within HUW76_07605at 1595.823 kb on + strand, within HUW76_07605at 1595.823 kb on + strand, within HUW76_07605at 1595.831 kb on - strand, within HUW76_07605at 1595.842 kb on + strand, within HUW76_07605at 1595.842 kb on + strand, within HUW76_07605at 1595.845 kb on + strand, within HUW76_07605at 1595.845 kb on + strand, within HUW76_07605at 1595.892 kb on + strand, within HUW76_07605at 1595.892 kb on + strand, within HUW76_07605at 1595.919 kb on + strand, within HUW76_07605

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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1,593,642 + -0.4
1,593,642 + -0.1
1,593,730 + +1.1
1,593,732 - -0.0
1,593,740 - +0.4
1,593,740 - +0.3
1,593,774 - +2.1
1,593,801 + +3.0
1,593,801 + +3.3
1,593,816 - +1.3
1,593,816 - +1.0
1,593,878 - +1.8
1,593,878 - +3.5
1,593,898 + HUW76_07600 0.11 +1.7
1,593,959 - HUW76_07600 0.16 +1.2
1,593,959 - HUW76_07600 0.16 +1.7
1,593,996 - HUW76_07600 0.19 +0.7
1,593,996 - HUW76_07600 0.19 +2.0
1,594,000 + HUW76_07600 0.19 +2.9
1,594,008 - HUW76_07600 0.20 +2.2
1,594,008 - HUW76_07600 0.20 +1.1
1,594,008 - HUW76_07600 0.20 +1.5
1,594,041 - HUW76_07600 0.23 +0.8
1,594,060 - HUW76_07600 0.24 +0.8
1,594,139 - HUW76_07600 0.30 +1.7
1,594,152 - HUW76_07600 0.31 +2.5
1,594,152 - HUW76_07600 0.31 +3.5
1,594,152 - HUW76_07600 0.31 +2.3
1,594,160 - HUW76_07600 0.32 +2.1
1,594,202 + HUW76_07600 0.35 +2.6
1,594,221 - HUW76_07600 0.37 +1.9
1,594,336 - HUW76_07600 0.46 +2.2
1,594,336 - HUW76_07600 0.46 +1.7
1,594,369 - HUW76_07600 0.49 +2.1
1,594,369 - HUW76_07600 0.49 +1.3
1,594,369 - HUW76_07600 0.49 +0.9
1,594,383 + HUW76_07600 0.50 +1.5
1,594,404 + HUW76_07600 0.51 +2.9
1,594,426 - HUW76_07600 0.53 +0.9
1,594,426 - HUW76_07600 0.53 +1.4
1,594,437 - HUW76_07600 0.54 +1.6
1,594,437 - HUW76_07600 0.54 +3.0
1,594,444 - HUW76_07600 0.55 +1.9
1,594,444 - HUW76_07600 0.55 +0.7
1,594,526 - HUW76_07600 0.61 +2.8
1,594,526 - HUW76_07600 0.61 +1.2
1,594,624 + HUW76_07600 0.69 +1.8
1,594,646 - HUW76_07600 0.71 +1.0
1,594,678 + HUW76_07600 0.73 +2.5
1,594,703 - HUW76_07600 0.75 +2.2
1,594,758 + HUW76_07600 0.79 +2.1
1,594,766 - HUW76_07600 0.80 +1.9
1,594,766 - HUW76_07600 0.80 +1.3
1,594,788 - HUW76_07600 0.82 +4.7
1,594,788 - HUW76_07600 0.82 +1.1
1,594,804 - HUW76_07600 0.83 +1.4
1,594,820 - HUW76_07600 0.84 +1.8
1,594,820 - HUW76_07600 0.84 +1.7
1,594,826 + HUW76_07600 0.85 +1.1
1,594,831 + HUW76_07600 0.85 -0.6
1,594,831 + HUW76_07600 0.85 +1.6
1,594,831 + HUW76_07600 0.85 +1.9
1,594,834 - HUW76_07600 0.85 +2.6
1,594,834 - HUW76_07600 0.85 +2.0
1,594,839 - HUW76_07600 0.86 +1.8
1,594,839 - HUW76_07600 0.86 +2.1
1,594,839 - HUW76_07600 0.86 +2.7
1,594,839 - HUW76_07600 0.86 +3.3
1,594,844 - HUW76_07600 0.86 +1.3
1,594,844 - HUW76_07600 0.86 +2.6
1,594,844 - HUW76_07600 0.86 +2.5
1,594,844 - HUW76_07600 0.86 +2.5
1,594,933 - +1.4
1,594,933 - +2.7
1,594,933 - +1.4
1,594,933 - +0.5
1,594,947 - +1.2
1,594,993 - +2.8
1,594,993 - +0.7
1,594,994 - +1.5
1,594,994 - +2.7
1,594,994 - +1.8
1,594,997 + +2.1
1,595,005 - +2.3
1,595,017 + +1.2
1,595,025 - +1.9
1,595,025 - +2.8
1,595,025 - +1.6
1,595,413 + +5.7
1,595,413 + +0.2
1,595,421 - +2.9
1,595,453 - +2.5
1,595,536 + HUW76_07605 0.14 +4.0
1,595,536 + HUW76_07605 0.14 +2.7
1,595,536 + HUW76_07605 0.14 +3.1
1,595,536 + HUW76_07605 0.14 +3.5
1,595,547 + HUW76_07605 0.15 +2.5
1,595,574 + HUW76_07605 0.18 +3.0
1,595,574 + HUW76_07605 0.18 +4.3
1,595,591 + HUW76_07605 0.19 +2.3
1,595,591 + HUW76_07605 0.19 +3.0
1,595,591 - HUW76_07605 0.19 +3.0
1,595,599 - HUW76_07605 0.20 +2.3
1,595,607 - HUW76_07605 0.21 +3.3
1,595,607 - HUW76_07605 0.21 +1.7
1,595,623 - HUW76_07605 0.23 +3.2
1,595,637 - HUW76_07605 0.24 +2.1
1,595,642 - HUW76_07605 0.25 +3.0
1,595,642 - HUW76_07605 0.25 +2.3
1,595,698 - HUW76_07605 0.30 +3.5
1,595,698 - HUW76_07605 0.30 +2.3
1,595,732 + HUW76_07605 0.33 +3.2
1,595,756 + HUW76_07605 0.36 +1.3
1,595,756 + HUW76_07605 0.36 +2.4
1,595,756 + HUW76_07605 0.36 +2.1
1,595,756 + HUW76_07605 0.36 +3.2
1,595,756 + HUW76_07605 0.36 +1.5
1,595,756 + HUW76_07605 0.36 +0.7
1,595,756 + HUW76_07605 0.36 +2.7
1,595,756 + HUW76_07605 0.36 +3.8
1,595,756 + HUW76_07605 0.36 +4.0
1,595,756 + HUW76_07605 0.36 +2.4
1,595,756 + HUW76_07605 0.36 +3.8
1,595,756 + HUW76_07605 0.36 +3.6
1,595,756 + HUW76_07605 0.36 +3.7
1,595,756 + HUW76_07605 0.36 +2.8
1,595,756 + HUW76_07605 0.36 +3.2
1,595,756 + HUW76_07605 0.36 +2.5
1,595,756 + HUW76_07605 0.36 +3.9
1,595,756 + HUW76_07605 0.36 +1.9
1,595,756 + HUW76_07605 0.36 +2.0
1,595,756 + HUW76_07605 0.36 +3.8
1,595,756 + HUW76_07605 0.36 -0.3
1,595,756 + HUW76_07605 0.36 +1.9
1,595,756 + HUW76_07605 0.36 +2.6
1,595,756 + HUW76_07605 0.36 +2.2
1,595,756 + HUW76_07605 0.36 +2.0
1,595,756 + HUW76_07605 0.36 +2.2
1,595,756 + HUW76_07605 0.36 +2.5
1,595,756 + HUW76_07605 0.36 +1.8
1,595,756 + HUW76_07605 0.36 +2.8
1,595,756 + HUW76_07605 0.36 +2.9
1,595,756 + HUW76_07605 0.36 +2.3
1,595,764 - HUW76_07605 0.37 +3.7
1,595,764 - HUW76_07605 0.37 +1.1
1,595,764 - HUW76_07605 0.37 +3.0
1,595,764 - HUW76_07605 0.37 +3.3
1,595,764 - HUW76_07605 0.37 +2.8
1,595,764 - HUW76_07605 0.37 +3.7
1,595,764 - HUW76_07605 0.37 -2.0
1,595,764 - HUW76_07605 0.37 +2.5
1,595,764 - HUW76_07605 0.37 +3.9
1,595,764 - HUW76_07605 0.37 +2.7
1,595,764 - HUW76_07605 0.37 +3.5
1,595,764 - HUW76_07605 0.37 +1.7
1,595,764 - HUW76_07605 0.37 +4.0
1,595,764 - HUW76_07605 0.37 +1.7
1,595,764 - HUW76_07605 0.37 +3.3
1,595,764 - HUW76_07605 0.37 +3.0
1,595,764 - HUW76_07605 0.37 +3.2
1,595,764 - HUW76_07605 0.37 +1.3
1,595,764 - HUW76_07605 0.37 +2.1
1,595,764 - HUW76_07605 0.37 +3.3
1,595,764 - HUW76_07605 0.37 +1.7
1,595,764 - HUW76_07605 0.37 +1.9
1,595,764 - HUW76_07605 0.37 +2.3
1,595,764 - HUW76_07605 0.37 +2.1
1,595,764 - HUW76_07605 0.37 +1.4
1,595,764 - HUW76_07605 0.37 +0.4
1,595,764 - HUW76_07605 0.37 +3.1
1,595,764 - HUW76_07605 0.37 +4.7
1,595,764 - HUW76_07605 0.37 +3.9
1,595,764 - HUW76_07605 0.37 +2.5
1,595,823 + HUW76_07605 0.42 +2.0
1,595,823 + HUW76_07605 0.42 +3.1
1,595,823 + HUW76_07605 0.42 +2.7
1,595,831 - HUW76_07605 0.43 +3.4
1,595,842 + HUW76_07605 0.44 +3.0
1,595,842 + HUW76_07605 0.44 +3.7
1,595,845 + HUW76_07605 0.45 +3.7
1,595,845 + HUW76_07605 0.45 +0.5
1,595,892 + HUW76_07605 0.49 +4.3
1,595,892 + HUW76_07605 0.49 +2.9
1,595,919 + HUW76_07605 0.52 +1.4

Or see this region's nucleotide sequence