Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_07225

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_07220 and HUW76_07225 are separated by 3 nucleotidesHUW76_07225 and HUW76_07230 are separated by 425 nucleotides HUW76_07220: HUW76_07220 - ABC transporter permease, at 1,501,018 to 1,502,187 _07220 HUW76_07225: HUW76_07225 - penicillin-binding protein 1C, at 1,502,191 to 1,504,437 _07225 HUW76_07230: HUW76_07230 - alpha-2-macroglobulin family protein, at 1,504,863 to 1,509,719 _07230 Position (kb) 1502 1503 1504 1505Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1502.236 kb on - strandat 1502.236 kb on - strandat 1502.236 kb on - strandat 1502.303 kb on - strandat 1502.303 kb on - strandat 1502.452 kb on - strand, within HUW76_07225at 1502.452 kb on - strand, within HUW76_07225at 1502.452 kb on - strand, within HUW76_07225at 1502.462 kb on - strand, within HUW76_07225at 1502.540 kb on - strand, within HUW76_07225at 1502.634 kb on - strand, within HUW76_07225at 1502.635 kb on - strand, within HUW76_07225at 1502.651 kb on - strand, within HUW76_07225at 1502.754 kb on - strand, within HUW76_07225at 1502.830 kb on + strand, within HUW76_07225at 1502.830 kb on + strand, within HUW76_07225at 1502.830 kb on + strand, within HUW76_07225at 1502.830 kb on + strand, within HUW76_07225at 1502.830 kb on + strand, within HUW76_07225at 1502.838 kb on - strand, within HUW76_07225at 1502.838 kb on - strand, within HUW76_07225at 1502.838 kb on - strand, within HUW76_07225at 1502.838 kb on - strand, within HUW76_07225at 1502.838 kb on - strand, within HUW76_07225at 1502.838 kb on - strand, within HUW76_07225at 1502.838 kb on - strand, within HUW76_07225at 1502.907 kb on + strand, within HUW76_07225at 1502.932 kb on - strand, within HUW76_07225at 1502.932 kb on - strand, within HUW76_07225at 1502.932 kb on - strand, within HUW76_07225at 1502.932 kb on - strand, within HUW76_07225at 1502.955 kb on - strand, within HUW76_07225at 1502.973 kb on + strand, within HUW76_07225at 1502.973 kb on + strand, within HUW76_07225at 1503.055 kb on - strand, within HUW76_07225at 1503.101 kb on + strand, within HUW76_07225at 1503.101 kb on + strand, within HUW76_07225at 1503.106 kb on + strand, within HUW76_07225at 1503.106 kb on + strand, within HUW76_07225at 1503.109 kb on - strand, within HUW76_07225at 1503.135 kb on + strand, within HUW76_07225at 1503.164 kb on - strand, within HUW76_07225at 1503.202 kb on - strand, within HUW76_07225at 1503.210 kb on + strand, within HUW76_07225at 1503.214 kb on - strand, within HUW76_07225at 1503.255 kb on - strand, within HUW76_07225at 1503.255 kb on - strand, within HUW76_07225at 1503.357 kb on - strand, within HUW76_07225at 1503.418 kb on + strand, within HUW76_07225at 1503.442 kb on - strand, within HUW76_07225at 1503.487 kb on + strand, within HUW76_07225at 1503.495 kb on - strand, within HUW76_07225at 1503.495 kb on - strand, within HUW76_07225at 1503.503 kb on + strand, within HUW76_07225at 1503.538 kb on - strand, within HUW76_07225at 1503.538 kb on - strand, within HUW76_07225at 1503.543 kb on - strand, within HUW76_07225at 1503.661 kb on + strand, within HUW76_07225at 1503.730 kb on - strand, within HUW76_07225at 1503.730 kb on - strand, within HUW76_07225at 1503.788 kb on + strand, within HUW76_07225at 1503.788 kb on + strand, within HUW76_07225at 1503.796 kb on - strand, within HUW76_07225at 1503.839 kb on + strand, within HUW76_07225at 1503.945 kb on - strand, within HUW76_07225at 1503.945 kb on - strand, within HUW76_07225at 1504.007 kb on + strand, within HUW76_07225at 1504.015 kb on - strand, within HUW76_07225at 1504.015 kb on - strand, within HUW76_07225at 1504.015 kb on - strand, within HUW76_07225at 1504.071 kb on - strand, within HUW76_07225at 1504.202 kb on + strand, within HUW76_07225at 1504.205 kb on - strand, within HUW76_07225at 1504.346 kb on - strandat 1504.350 kb on + strandat 1504.594 kb on + strandat 1504.594 kb on + strandat 1504.645 kb on + strandat 1504.730 kb on - strandat 1504.730 kb on - strandat 1504.730 kb on - strandat 1504.730 kb on - strandat 1504.732 kb on - strandat 1504.821 kb on + strandat 1504.889 kb on + strandat 1504.946 kb on + strandat 1504.955 kb on + strandat 1504.955 kb on + strandat 1504.970 kb on - strandat 1504.970 kb on - strandat 1505.003 kb on - strandat 1505.003 kb on - strandat 1505.022 kb on - strandat 1505.022 kb on - strandat 1505.038 kb on + strandat 1505.046 kb on - strandat 1505.149 kb on - strandat 1505.272 kb on + strandat 1505.280 kb on - strandat 1505.297 kb on - strandat 1505.297 kb on - strandat 1505.371 kb on + strand, within HUW76_07230

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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1,502,236 - +1.3
1,502,236 - +2.4
1,502,236 - +1.0
1,502,303 - +1.3
1,502,303 - +1.2
1,502,452 - HUW76_07225 0.12 +2.0
1,502,452 - HUW76_07225 0.12 +1.8
1,502,452 - HUW76_07225 0.12 +0.6
1,502,462 - HUW76_07225 0.12 +2.0
1,502,540 - HUW76_07225 0.16 +1.7
1,502,634 - HUW76_07225 0.20 +1.6
1,502,635 - HUW76_07225 0.20 +1.9
1,502,651 - HUW76_07225 0.20 +1.9
1,502,754 - HUW76_07225 0.25 +1.0
1,502,830 + HUW76_07225 0.28 +2.3
1,502,830 + HUW76_07225 0.28 +2.8
1,502,830 + HUW76_07225 0.28 +1.0
1,502,830 + HUW76_07225 0.28 +2.0
1,502,830 + HUW76_07225 0.28 -0.1
1,502,838 - HUW76_07225 0.29 +1.1
1,502,838 - HUW76_07225 0.29 +1.2
1,502,838 - HUW76_07225 0.29 +1.9
1,502,838 - HUW76_07225 0.29 +1.8
1,502,838 - HUW76_07225 0.29 +1.9
1,502,838 - HUW76_07225 0.29 +1.8
1,502,838 - HUW76_07225 0.29 +2.8
1,502,907 + HUW76_07225 0.32 +1.3
1,502,932 - HUW76_07225 0.33 +1.3
1,502,932 - HUW76_07225 0.33 +1.3
1,502,932 - HUW76_07225 0.33 +1.2
1,502,932 - HUW76_07225 0.33 +1.5
1,502,955 - HUW76_07225 0.34 +1.6
1,502,973 + HUW76_07225 0.35 +0.6
1,502,973 + HUW76_07225 0.35 -0.9
1,503,055 - HUW76_07225 0.38 +0.8
1,503,101 + HUW76_07225 0.40 +1.5
1,503,101 + HUW76_07225 0.40 +1.1
1,503,106 + HUW76_07225 0.41 +0.4
1,503,106 + HUW76_07225 0.41 +0.8
1,503,109 - HUW76_07225 0.41 +1.4
1,503,135 + HUW76_07225 0.42 +0.6
1,503,164 - HUW76_07225 0.43 +1.6
1,503,202 - HUW76_07225 0.45 +1.8
1,503,210 + HUW76_07225 0.45 +0.6
1,503,214 - HUW76_07225 0.46 +1.6
1,503,255 - HUW76_07225 0.47 +1.5
1,503,255 - HUW76_07225 0.47 +1.4
1,503,357 - HUW76_07225 0.52 +0.9
1,503,418 + HUW76_07225 0.55 +0.2
1,503,442 - HUW76_07225 0.56 +1.7
1,503,487 + HUW76_07225 0.58 +3.7
1,503,495 - HUW76_07225 0.58 +1.7
1,503,495 - HUW76_07225 0.58 +1.5
1,503,503 + HUW76_07225 0.58 +0.1
1,503,538 - HUW76_07225 0.60 +3.3
1,503,538 - HUW76_07225 0.60 +1.3
1,503,543 - HUW76_07225 0.60 +1.7
1,503,661 + HUW76_07225 0.65 +4.0
1,503,730 - HUW76_07225 0.68 +1.0
1,503,730 - HUW76_07225 0.68 +1.3
1,503,788 + HUW76_07225 0.71 +2.3
1,503,788 + HUW76_07225 0.71 +1.1
1,503,796 - HUW76_07225 0.71 +1.1
1,503,839 + HUW76_07225 0.73 +2.5
1,503,945 - HUW76_07225 0.78 +0.7
1,503,945 - HUW76_07225 0.78 +1.7
1,504,007 + HUW76_07225 0.81 +2.7
1,504,015 - HUW76_07225 0.81 +1.7
1,504,015 - HUW76_07225 0.81 +0.9
1,504,015 - HUW76_07225 0.81 +1.3
1,504,071 - HUW76_07225 0.84 +1.7
1,504,202 + HUW76_07225 0.89 +0.1
1,504,205 - HUW76_07225 0.90 +1.3
1,504,346 - +2.0
1,504,350 + +0.0
1,504,594 + +0.9
1,504,594 + -2.2
1,504,645 + -0.7
1,504,730 - -0.2
1,504,730 - +0.1
1,504,730 - +0.6
1,504,730 - +0.3
1,504,732 - +0.4
1,504,821 + +0.5
1,504,889 + +0.7
1,504,946 + +0.9
1,504,955 + +1.7
1,504,955 + +0.4
1,504,970 - +0.8
1,504,970 - +0.9
1,505,003 - +0.8
1,505,003 - +0.5
1,505,022 - +0.0
1,505,022 - +1.3
1,505,038 + +2.2
1,505,046 - +0.7
1,505,149 - +0.7
1,505,272 + +2.3
1,505,280 - +0.8
1,505,297 - +0.8
1,505,297 - +1.5
1,505,371 + HUW76_07230 0.10 +0.0

Or see this region's nucleotide sequence