Experiment: Time0_glycerolstock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_05750 and HUW76_05755 are separated by 443 nucleotides HUW76_05755 and HUW76_05760 are separated by 34 nucleotides HUW76_05760 and HUW76_05765 are separated by 154 nucleotides
HUW76_05750: HUW76_05750 - toxin-antitoxin system YwqK family antitoxin, at 1,160,395 to 1,161,153
_05750
HUW76_05755: HUW76_05755 - site-specific integrase, at 1,161,597 to 1,162,583
_05755
HUW76_05760: HUW76_05760 - Dabb family protein, at 1,162,618 to 1,162,914
_05760
HUW76_05765: HUW76_05765 - hypothetical protein, at 1,163,069 to 1,163,938
_05765
Position (kb)
1161
1162
1163 Strain fitness (log2 ratio)
-1
0
1
2 at 1160.654 kb on - strand, within HUW76_05750 at 1160.741 kb on - strand, within HUW76_05750 at 1160.773 kb on + strand, within HUW76_05750 at 1160.773 kb on + strand, within HUW76_05750 at 1160.774 kb on + strand, within HUW76_05750 at 1160.832 kb on + strand, within HUW76_05750 at 1160.848 kb on - strand, within HUW76_05750 at 1160.901 kb on + strand, within HUW76_05750 at 1160.901 kb on + strand, within HUW76_05750 at 1160.901 kb on + strand, within HUW76_05750 at 1160.909 kb on - strand, within HUW76_05750 at 1160.909 kb on - strand, within HUW76_05750 at 1160.909 kb on - strand, within HUW76_05750 at 1160.909 kb on - strand, within HUW76_05750 at 1160.909 kb on - strand, within HUW76_05750 at 1160.909 kb on - strand, within HUW76_05750 at 1160.909 kb on - strand, within HUW76_05750 at 1160.909 kb on - strand, within HUW76_05750 at 1161.005 kb on - strand, within HUW76_05750 at 1161.032 kb on - strand, within HUW76_05750 at 1161.032 kb on - strand, within HUW76_05750 at 1161.032 kb on - strand, within HUW76_05750 at 1161.032 kb on - strand, within HUW76_05750 at 1161.841 kb on + strand, within HUW76_05755 at 1161.850 kb on - strand, within HUW76_05755 at 1161.850 kb on - strand, within HUW76_05755 at 1161.920 kb on - strand, within HUW76_05755 at 1161.932 kb on + strand, within HUW76_05755 at 1161.939 kb on - strand, within HUW76_05755 at 1161.973 kb on + strand, within HUW76_05755 at 1161.974 kb on + strand, within HUW76_05755 at 1161.983 kb on + strand, within HUW76_05755 at 1161.991 kb on - strand, within HUW76_05755 at 1161.991 kb on - strand, within HUW76_05755 at 1162.002 kb on - strand, within HUW76_05755 at 1162.002 kb on - strand, within HUW76_05755 at 1162.298 kb on - strand, within HUW76_05755 at 1162.309 kb on - strand, within HUW76_05755 at 1162.309 kb on - strand, within HUW76_05755 at 1162.469 kb on - strand, within HUW76_05755 at 1162.469 kb on - strand, within HUW76_05755 at 1162.469 kb on - strand, within HUW76_05755 at 1162.469 kb on - strand, within HUW76_05755 at 1162.520 kb on + strand at 1162.520 kb on + strand at 1162.629 kb on + strand at 1162.634 kb on + strand at 1162.645 kb on + strand at 1162.645 kb on + strand at 1162.653 kb on - strand, within HUW76_05760 at 1162.653 kb on - strand, within HUW76_05760 at 1162.653 kb on - strand, within HUW76_05760 at 1162.653 kb on - strand, within HUW76_05760 at 1162.667 kb on - strand, within HUW76_05760 at 1162.761 kb on + strand, within HUW76_05760 at 1162.819 kb on + strand, within HUW76_05760 at 1162.819 kb on + strand, within HUW76_05760 at 1162.924 kb on - strand at 1162.924 kb on - strand at 1162.982 kb on + strand at 1162.982 kb on + strand at 1162.982 kb on + strand at 1162.990 kb on - strand at 1162.990 kb on - strand at 1162.990 kb on - strand at 1163.000 kb on - strand at 1163.000 kb on - strand at 1163.048 kb on - strand at 1163.048 kb on - strand at 1163.103 kb on - strand at 1163.103 kb on - strand at 1163.163 kb on - strand, within HUW76_05765 at 1163.173 kb on - strand, within HUW76_05765 at 1163.173 kb on - strand, within HUW76_05765 at 1163.225 kb on + strand, within HUW76_05765 at 1163.233 kb on - strand, within HUW76_05765 at 1163.233 kb on - strand, within HUW76_05765 at 1163.260 kb on - strand, within HUW76_05765 at 1163.339 kb on - strand, within HUW76_05765 at 1163.339 kb on - strand, within HUW76_05765 at 1163.402 kb on - strand, within HUW76_05765 at 1163.407 kb on - strand, within HUW76_05765 at 1163.428 kb on - strand, within HUW76_05765 at 1163.494 kb on + strand, within HUW76_05765 at 1163.496 kb on + strand, within HUW76_05765 at 1163.504 kb on - strand, within HUW76_05765 at 1163.504 kb on - strand, within HUW76_05765 at 1163.504 kb on - strand, within HUW76_05765 at 1163.509 kb on - strand, within HUW76_05765 at 1163.509 kb on - strand, within HUW76_05765 at 1163.509 kb on - strand, within HUW76_05765 at 1163.518 kb on - strand, within HUW76_05765 at 1163.526 kb on - strand, within HUW76_05765 at 1163.526 kb on - strand, within HUW76_05765 at 1163.539 kb on - strand, within HUW76_05765 at 1163.541 kb on + strand, within HUW76_05765 at 1163.541 kb on + strand, within HUW76_05765 at 1163.549 kb on - strand, within HUW76_05765 at 1163.549 kb on - strand, within HUW76_05765
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_glycerolstock remove 1,160,654 - HUW76_05750 0.34 -0.5 1,160,741 - HUW76_05750 0.46 +0.1 1,160,773 + HUW76_05750 0.50 -0.6 1,160,773 + HUW76_05750 0.50 +0.0 1,160,774 + HUW76_05750 0.50 -0.4 1,160,832 + HUW76_05750 0.58 -0.1 1,160,848 - HUW76_05750 0.60 +2.5 1,160,901 + HUW76_05750 0.67 +0.1 1,160,901 + HUW76_05750 0.67 -0.4 1,160,901 + HUW76_05750 0.67 -0.0 1,160,909 - HUW76_05750 0.68 +0.5 1,160,909 - HUW76_05750 0.68 +1.1 1,160,909 - HUW76_05750 0.68 +0.5 1,160,909 - HUW76_05750 0.68 +1.4 1,160,909 - HUW76_05750 0.68 +1.1 1,160,909 - HUW76_05750 0.68 +0.1 1,160,909 - HUW76_05750 0.68 +1.5 1,160,909 - HUW76_05750 0.68 +0.7 1,161,005 - HUW76_05750 0.80 +1.6 1,161,032 - HUW76_05750 0.84 +0.8 1,161,032 - HUW76_05750 0.84 +0.7 1,161,032 - HUW76_05750 0.84 +1.1 1,161,032 - HUW76_05750 0.84 +0.1 1,161,841 + HUW76_05755 0.25 +0.6 1,161,850 - HUW76_05755 0.26 +1.0 1,161,850 - HUW76_05755 0.26 +0.6 1,161,920 - HUW76_05755 0.33 +1.2 1,161,932 + HUW76_05755 0.34 +0.5 1,161,939 - HUW76_05755 0.35 +0.5 1,161,973 + HUW76_05755 0.38 +0.7 1,161,974 + HUW76_05755 0.38 +1.2 1,161,983 + HUW76_05755 0.39 +1.8 1,161,991 - HUW76_05755 0.40 +0.6 1,161,991 - HUW76_05755 0.40 -0.1 1,162,002 - HUW76_05755 0.41 +1.2 1,162,002 - HUW76_05755 0.41 +1.1 1,162,298 - HUW76_05755 0.71 -0.5 1,162,309 - HUW76_05755 0.72 +0.7 1,162,309 - HUW76_05755 0.72 +1.2 1,162,469 - HUW76_05755 0.88 +1.2 1,162,469 - HUW76_05755 0.88 +1.0 1,162,469 - HUW76_05755 0.88 +0.8 1,162,469 - HUW76_05755 0.88 -0.7 1,162,520 + +0.0 1,162,520 + +1.2 1,162,629 + -0.0 1,162,634 + +0.9 1,162,645 + +1.0 1,162,645 + +1.5 1,162,653 - HUW76_05760 0.12 +0.0 1,162,653 - HUW76_05760 0.12 +0.0 1,162,653 - HUW76_05760 0.12 -0.2 1,162,653 - HUW76_05760 0.12 -0.3 1,162,667 - HUW76_05760 0.16 +0.5 1,162,761 + HUW76_05760 0.48 +0.8 1,162,819 + HUW76_05760 0.68 +1.0 1,162,819 + HUW76_05760 0.68 +2.7 1,162,924 - -0.7 1,162,924 - -0.8 1,162,982 + +1.6 1,162,982 + +0.1 1,162,982 + +0.9 1,162,990 - -0.3 1,162,990 - -0.3 1,162,990 - +0.7 1,163,000 - -0.5 1,163,000 - -0.2 1,163,048 - -0.3 1,163,048 - -0.1 1,163,103 - -0.2 1,163,103 - -0.2 1,163,163 - HUW76_05765 0.11 -0.6 1,163,173 - HUW76_05765 0.12 -0.6 1,163,173 - HUW76_05765 0.12 -0.4 1,163,225 + HUW76_05765 0.18 +1.1 1,163,233 - HUW76_05765 0.19 -0.2 1,163,233 - HUW76_05765 0.19 -1.2 1,163,260 - HUW76_05765 0.22 -0.7 1,163,339 - HUW76_05765 0.31 +0.5 1,163,339 - HUW76_05765 0.31 +0.5 1,163,402 - HUW76_05765 0.38 -0.6 1,163,407 - HUW76_05765 0.39 -1.1 1,163,428 - HUW76_05765 0.41 -0.4 1,163,494 + HUW76_05765 0.49 +0.9 1,163,496 + HUW76_05765 0.49 -0.4 1,163,504 - HUW76_05765 0.50 +1.0 1,163,504 - HUW76_05765 0.50 +0.2 1,163,504 - HUW76_05765 0.50 -1.0 1,163,509 - HUW76_05765 0.51 -0.7 1,163,509 - HUW76_05765 0.51 -0.4 1,163,509 - HUW76_05765 0.51 -0.5 1,163,518 - HUW76_05765 0.52 -0.6 1,163,526 - HUW76_05765 0.53 -0.5 1,163,526 - HUW76_05765 0.53 -0.1 1,163,539 - HUW76_05765 0.54 -0.1 1,163,541 + HUW76_05765 0.54 +1.9 1,163,541 + HUW76_05765 0.54 +0.6 1,163,549 - HUW76_05765 0.55 -0.5 1,163,549 - HUW76_05765 0.55 +0.2
Or see this region's nucleotide sequence