Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_05755

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_05750 and HUW76_05755 are separated by 443 nucleotidesHUW76_05755 and HUW76_05760 are separated by 34 nucleotidesHUW76_05760 and HUW76_05765 are separated by 154 nucleotides HUW76_05750: HUW76_05750 - toxin-antitoxin system YwqK family antitoxin, at 1,160,395 to 1,161,153 _05750 HUW76_05755: HUW76_05755 - site-specific integrase, at 1,161,597 to 1,162,583 _05755 HUW76_05760: HUW76_05760 - Dabb family protein, at 1,162,618 to 1,162,914 _05760 HUW76_05765: HUW76_05765 - hypothetical protein, at 1,163,069 to 1,163,938 _05765 Position (kb) 1161 1162 1163Strain fitness (log2 ratio) -1 0 1 2at 1160.654 kb on - strand, within HUW76_05750at 1160.741 kb on - strand, within HUW76_05750at 1160.773 kb on + strand, within HUW76_05750at 1160.773 kb on + strand, within HUW76_05750at 1160.774 kb on + strand, within HUW76_05750at 1160.832 kb on + strand, within HUW76_05750at 1160.848 kb on - strand, within HUW76_05750at 1160.901 kb on + strand, within HUW76_05750at 1160.901 kb on + strand, within HUW76_05750at 1160.901 kb on + strand, within HUW76_05750at 1160.909 kb on - strand, within HUW76_05750at 1160.909 kb on - strand, within HUW76_05750at 1160.909 kb on - strand, within HUW76_05750at 1160.909 kb on - strand, within HUW76_05750at 1160.909 kb on - strand, within HUW76_05750at 1160.909 kb on - strand, within HUW76_05750at 1160.909 kb on - strand, within HUW76_05750at 1160.909 kb on - strand, within HUW76_05750at 1161.005 kb on - strand, within HUW76_05750at 1161.032 kb on - strand, within HUW76_05750at 1161.032 kb on - strand, within HUW76_05750at 1161.032 kb on - strand, within HUW76_05750at 1161.032 kb on - strand, within HUW76_05750at 1161.841 kb on + strand, within HUW76_05755at 1161.850 kb on - strand, within HUW76_05755at 1161.850 kb on - strand, within HUW76_05755at 1161.920 kb on - strand, within HUW76_05755at 1161.932 kb on + strand, within HUW76_05755at 1161.939 kb on - strand, within HUW76_05755at 1161.973 kb on + strand, within HUW76_05755at 1161.974 kb on + strand, within HUW76_05755at 1161.983 kb on + strand, within HUW76_05755at 1161.991 kb on - strand, within HUW76_05755at 1161.991 kb on - strand, within HUW76_05755at 1162.002 kb on - strand, within HUW76_05755at 1162.002 kb on - strand, within HUW76_05755at 1162.298 kb on - strand, within HUW76_05755at 1162.309 kb on - strand, within HUW76_05755at 1162.309 kb on - strand, within HUW76_05755at 1162.469 kb on - strand, within HUW76_05755at 1162.469 kb on - strand, within HUW76_05755at 1162.469 kb on - strand, within HUW76_05755at 1162.469 kb on - strand, within HUW76_05755at 1162.520 kb on + strandat 1162.520 kb on + strandat 1162.629 kb on + strandat 1162.634 kb on + strandat 1162.645 kb on + strandat 1162.645 kb on + strandat 1162.653 kb on - strand, within HUW76_05760at 1162.653 kb on - strand, within HUW76_05760at 1162.653 kb on - strand, within HUW76_05760at 1162.653 kb on - strand, within HUW76_05760at 1162.667 kb on - strand, within HUW76_05760at 1162.761 kb on + strand, within HUW76_05760at 1162.819 kb on + strand, within HUW76_05760at 1162.819 kb on + strand, within HUW76_05760at 1162.924 kb on - strandat 1162.924 kb on - strandat 1162.982 kb on + strandat 1162.982 kb on + strandat 1162.982 kb on + strandat 1162.990 kb on - strandat 1162.990 kb on - strandat 1162.990 kb on - strandat 1163.000 kb on - strandat 1163.000 kb on - strandat 1163.048 kb on - strandat 1163.048 kb on - strandat 1163.103 kb on - strandat 1163.103 kb on - strandat 1163.163 kb on - strand, within HUW76_05765at 1163.173 kb on - strand, within HUW76_05765at 1163.173 kb on - strand, within HUW76_05765at 1163.225 kb on + strand, within HUW76_05765at 1163.233 kb on - strand, within HUW76_05765at 1163.233 kb on - strand, within HUW76_05765at 1163.260 kb on - strand, within HUW76_05765at 1163.339 kb on - strand, within HUW76_05765at 1163.339 kb on - strand, within HUW76_05765at 1163.402 kb on - strand, within HUW76_05765at 1163.407 kb on - strand, within HUW76_05765at 1163.428 kb on - strand, within HUW76_05765at 1163.494 kb on + strand, within HUW76_05765at 1163.496 kb on + strand, within HUW76_05765at 1163.504 kb on - strand, within HUW76_05765at 1163.504 kb on - strand, within HUW76_05765at 1163.504 kb on - strand, within HUW76_05765at 1163.509 kb on - strand, within HUW76_05765at 1163.509 kb on - strand, within HUW76_05765at 1163.509 kb on - strand, within HUW76_05765at 1163.518 kb on - strand, within HUW76_05765at 1163.526 kb on - strand, within HUW76_05765at 1163.526 kb on - strand, within HUW76_05765at 1163.539 kb on - strand, within HUW76_05765at 1163.541 kb on + strand, within HUW76_05765at 1163.541 kb on + strand, within HUW76_05765at 1163.549 kb on - strand, within HUW76_05765at 1163.549 kb on - strand, within HUW76_05765

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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1,160,654 - HUW76_05750 0.34 -0.5
1,160,741 - HUW76_05750 0.46 +0.1
1,160,773 + HUW76_05750 0.50 -0.6
1,160,773 + HUW76_05750 0.50 +0.0
1,160,774 + HUW76_05750 0.50 -0.4
1,160,832 + HUW76_05750 0.58 -0.1
1,160,848 - HUW76_05750 0.60 +2.5
1,160,901 + HUW76_05750 0.67 +0.1
1,160,901 + HUW76_05750 0.67 -0.4
1,160,901 + HUW76_05750 0.67 -0.0
1,160,909 - HUW76_05750 0.68 +0.5
1,160,909 - HUW76_05750 0.68 +1.1
1,160,909 - HUW76_05750 0.68 +0.5
1,160,909 - HUW76_05750 0.68 +1.4
1,160,909 - HUW76_05750 0.68 +1.1
1,160,909 - HUW76_05750 0.68 +0.1
1,160,909 - HUW76_05750 0.68 +1.5
1,160,909 - HUW76_05750 0.68 +0.7
1,161,005 - HUW76_05750 0.80 +1.6
1,161,032 - HUW76_05750 0.84 +0.8
1,161,032 - HUW76_05750 0.84 +0.7
1,161,032 - HUW76_05750 0.84 +1.1
1,161,032 - HUW76_05750 0.84 +0.1
1,161,841 + HUW76_05755 0.25 +0.6
1,161,850 - HUW76_05755 0.26 +1.0
1,161,850 - HUW76_05755 0.26 +0.6
1,161,920 - HUW76_05755 0.33 +1.2
1,161,932 + HUW76_05755 0.34 +0.5
1,161,939 - HUW76_05755 0.35 +0.5
1,161,973 + HUW76_05755 0.38 +0.7
1,161,974 + HUW76_05755 0.38 +1.2
1,161,983 + HUW76_05755 0.39 +1.8
1,161,991 - HUW76_05755 0.40 +0.6
1,161,991 - HUW76_05755 0.40 -0.1
1,162,002 - HUW76_05755 0.41 +1.2
1,162,002 - HUW76_05755 0.41 +1.1
1,162,298 - HUW76_05755 0.71 -0.5
1,162,309 - HUW76_05755 0.72 +0.7
1,162,309 - HUW76_05755 0.72 +1.2
1,162,469 - HUW76_05755 0.88 +1.2
1,162,469 - HUW76_05755 0.88 +1.0
1,162,469 - HUW76_05755 0.88 +0.8
1,162,469 - HUW76_05755 0.88 -0.7
1,162,520 + +0.0
1,162,520 + +1.2
1,162,629 + -0.0
1,162,634 + +0.9
1,162,645 + +1.0
1,162,645 + +1.5
1,162,653 - HUW76_05760 0.12 +0.0
1,162,653 - HUW76_05760 0.12 +0.0
1,162,653 - HUW76_05760 0.12 -0.2
1,162,653 - HUW76_05760 0.12 -0.3
1,162,667 - HUW76_05760 0.16 +0.5
1,162,761 + HUW76_05760 0.48 +0.8
1,162,819 + HUW76_05760 0.68 +1.0
1,162,819 + HUW76_05760 0.68 +2.7
1,162,924 - -0.7
1,162,924 - -0.8
1,162,982 + +1.6
1,162,982 + +0.1
1,162,982 + +0.9
1,162,990 - -0.3
1,162,990 - -0.3
1,162,990 - +0.7
1,163,000 - -0.5
1,163,000 - -0.2
1,163,048 - -0.3
1,163,048 - -0.1
1,163,103 - -0.2
1,163,103 - -0.2
1,163,163 - HUW76_05765 0.11 -0.6
1,163,173 - HUW76_05765 0.12 -0.6
1,163,173 - HUW76_05765 0.12 -0.4
1,163,225 + HUW76_05765 0.18 +1.1
1,163,233 - HUW76_05765 0.19 -0.2
1,163,233 - HUW76_05765 0.19 -1.2
1,163,260 - HUW76_05765 0.22 -0.7
1,163,339 - HUW76_05765 0.31 +0.5
1,163,339 - HUW76_05765 0.31 +0.5
1,163,402 - HUW76_05765 0.38 -0.6
1,163,407 - HUW76_05765 0.39 -1.1
1,163,428 - HUW76_05765 0.41 -0.4
1,163,494 + HUW76_05765 0.49 +0.9
1,163,496 + HUW76_05765 0.49 -0.4
1,163,504 - HUW76_05765 0.50 +1.0
1,163,504 - HUW76_05765 0.50 +0.2
1,163,504 - HUW76_05765 0.50 -1.0
1,163,509 - HUW76_05765 0.51 -0.7
1,163,509 - HUW76_05765 0.51 -0.4
1,163,509 - HUW76_05765 0.51 -0.5
1,163,518 - HUW76_05765 0.52 -0.6
1,163,526 - HUW76_05765 0.53 -0.5
1,163,526 - HUW76_05765 0.53 -0.1
1,163,539 - HUW76_05765 0.54 -0.1
1,163,541 + HUW76_05765 0.54 +1.9
1,163,541 + HUW76_05765 0.54 +0.6
1,163,549 - HUW76_05765 0.55 -0.5
1,163,549 - HUW76_05765 0.55 +0.2

Or see this region's nucleotide sequence