Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04435

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04430 and HUW76_04435 are separated by 76 nucleotidesHUW76_04435 and HUW76_04440 overlap by 8 nucleotidesHUW76_04440 and HUW76_04445 overlap by 1 nucleotides HUW76_04430: HUW76_04430 - NADH:flavin oxidoreductase, at 894,353 to 895,300 _04430 HUW76_04435: HUW76_04435 - type II toxin-antitoxin system HicB family antitoxin, at 895,377 to 896,255 _04435 HUW76_04440: HUW76_04440 - phosphatidylinositol-4-phosphate 5-kinase, at 896,248 to 897,129 _04440 HUW76_04445: HUW76_04445 - rRNA pseudouridine synthase, at 897,129 to 897,809 _04445 Position (kb) 895 896 897Strain fitness (log2 ratio) -2 -1 0 1 2 3at 894.423 kb on + strandat 894.452 kb on + strand, within HUW76_04430at 894.457 kb on + strand, within HUW76_04430at 894.462 kb on + strand, within HUW76_04430at 894.462 kb on + strand, within HUW76_04430at 894.608 kb on - strand, within HUW76_04430at 894.610 kb on + strand, within HUW76_04430at 894.618 kb on - strand, within HUW76_04430at 894.618 kb on - strand, within HUW76_04430at 894.618 kb on - strand, within HUW76_04430at 894.637 kb on + strand, within HUW76_04430at 894.645 kb on - strand, within HUW76_04430at 894.751 kb on - strand, within HUW76_04430at 894.751 kb on - strand, within HUW76_04430at 894.751 kb on - strand, within HUW76_04430at 894.950 kb on - strand, within HUW76_04430at 894.959 kb on - strand, within HUW76_04430at 894.996 kb on + strand, within HUW76_04430at 895.019 kb on - strand, within HUW76_04430at 895.031 kb on + strand, within HUW76_04430at 895.039 kb on - strand, within HUW76_04430at 895.039 kb on - strand, within HUW76_04430at 895.039 kb on - strand, within HUW76_04430at 895.098 kb on + strand, within HUW76_04430at 895.237 kb on + strandat 895.237 kb on + strandat 895.240 kb on - strandat 895.240 kb on - strandat 895.254 kb on - strandat 895.393 kb on + strandat 895.393 kb on + strandat 895.484 kb on + strand, within HUW76_04435at 895.484 kb on + strand, within HUW76_04435at 895.494 kb on - strand, within HUW76_04435at 895.494 kb on - strand, within HUW76_04435at 895.555 kb on + strand, within HUW76_04435at 895.555 kb on + strand, within HUW76_04435at 895.564 kb on - strand, within HUW76_04435at 895.590 kb on + strand, within HUW76_04435at 895.590 kb on + strand, within HUW76_04435at 895.599 kb on - strand, within HUW76_04435at 895.599 kb on - strand, within HUW76_04435at 895.607 kb on + strand, within HUW76_04435at 895.607 kb on + strand, within HUW76_04435at 895.607 kb on + strand, within HUW76_04435at 895.607 kb on + strand, within HUW76_04435at 895.607 kb on + strand, within HUW76_04435at 895.615 kb on - strand, within HUW76_04435at 895.661 kb on - strand, within HUW76_04435at 895.671 kb on + strand, within HUW76_04435at 895.671 kb on + strand, within HUW76_04435at 895.679 kb on - strand, within HUW76_04435at 895.733 kb on + strand, within HUW76_04435at 895.737 kb on + strand, within HUW76_04435at 895.788 kb on + strand, within HUW76_04435at 895.790 kb on + strand, within HUW76_04435at 895.790 kb on + strand, within HUW76_04435at 895.815 kb on - strand, within HUW76_04435at 895.819 kb on + strand, within HUW76_04435at 895.819 kb on + strand, within HUW76_04435at 895.827 kb on - strand, within HUW76_04435at 895.827 kb on - strand, within HUW76_04435at 895.879 kb on - strand, within HUW76_04435at 896.013 kb on - strand, within HUW76_04435at 896.130 kb on - strand, within HUW76_04435at 896.136 kb on + strand, within HUW76_04435at 896.161 kb on - strand, within HUW76_04435at 896.202 kb on + strandat 896.202 kb on + strandat 896.212 kb on + strandat 896.212 kb on + strandat 896.217 kb on - strandat 896.229 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.247 kb on - strandat 896.247 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.257 kb on + strandat 896.257 kb on + strandat 896.265 kb on - strandat 896.265 kb on - strandat 896.319 kb on + strandat 896.416 kb on - strand, within HUW76_04440at 896.435 kb on + strand, within HUW76_04440at 896.467 kb on - strand, within HUW76_04440at 896.467 kb on - strand, within HUW76_04440at 896.467 kb on - strand, within HUW76_04440at 896.486 kb on + strand, within HUW76_04440at 896.494 kb on + strand, within HUW76_04440at 896.586 kb on - strand, within HUW76_04440at 896.586 kb on - strand, within HUW76_04440at 896.637 kb on + strand, within HUW76_04440at 896.637 kb on + strand, within HUW76_04440at 896.637 kb on + strand, within HUW76_04440at 896.643 kb on + strand, within HUW76_04440at 896.651 kb on - strand, within HUW76_04440at 896.725 kb on - strand, within HUW76_04440at 896.725 kb on - strand, within HUW76_04440at 896.733 kb on - strand, within HUW76_04440at 896.733 kb on - strand, within HUW76_04440at 896.741 kb on - strand, within HUW76_04440at 896.821 kb on + strand, within HUW76_04440at 896.821 kb on + strand, within HUW76_04440at 896.829 kb on - strand, within HUW76_04440at 896.829 kb on - strand, within HUW76_04440at 896.875 kb on - strand, within HUW76_04440at 896.875 kb on - strand, within HUW76_04440at 896.920 kb on + strand, within HUW76_04440at 896.920 kb on + strand, within HUW76_04440at 897.043 kb on + strandat 897.043 kb on + strandat 897.051 kb on - strandat 897.088 kb on + strandat 897.099 kb on + strandat 897.107 kb on - strandat 897.107 kb on - strandat 897.116 kb on + strandat 897.116 kb on + strandat 897.123 kb on + strandat 897.123 kb on + strandat 897.124 kb on - strandat 897.124 kb on - strandat 897.124 kb on - strandat 897.136 kb on - strandat 897.136 kb on - strandat 897.136 kb on - strandat 897.138 kb on + strandat 897.146 kb on - strandat 897.160 kb on + strandat 897.160 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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894,423 + +0.3
894,452 + HUW76_04430 0.10 -0.6
894,457 + HUW76_04430 0.11 -0.9
894,462 + HUW76_04430 0.11 -0.7
894,462 + HUW76_04430 0.11 -1.7
894,608 - HUW76_04430 0.27 +0.4
894,610 + HUW76_04430 0.27 -0.3
894,618 - HUW76_04430 0.28 -0.7
894,618 - HUW76_04430 0.28 +1.0
894,618 - HUW76_04430 0.28 +0.3
894,637 + HUW76_04430 0.30 -0.8
894,645 - HUW76_04430 0.31 +0.1
894,751 - HUW76_04430 0.42 +0.1
894,751 - HUW76_04430 0.42 +1.0
894,751 - HUW76_04430 0.42 +0.2
894,950 - HUW76_04430 0.63 -0.1
894,959 - HUW76_04430 0.64 +0.7
894,996 + HUW76_04430 0.68 -0.6
895,019 - HUW76_04430 0.70 +1.3
895,031 + HUW76_04430 0.72 -0.5
895,039 - HUW76_04430 0.72 +0.7
895,039 - HUW76_04430 0.72 +1.2
895,039 - HUW76_04430 0.72 -0.3
895,098 + HUW76_04430 0.79 +0.8
895,237 + -0.5
895,237 + +0.3
895,240 - +1.2
895,240 - -0.3
895,254 - -0.3
895,393 + -0.3
895,393 + -1.4
895,484 + HUW76_04435 0.12 -2.0
895,484 + HUW76_04435 0.12 -0.4
895,494 - HUW76_04435 0.13 +0.1
895,494 - HUW76_04435 0.13 -0.7
895,555 + HUW76_04435 0.20 -0.9
895,555 + HUW76_04435 0.20 -0.1
895,564 - HUW76_04435 0.21 +0.0
895,590 + HUW76_04435 0.24 -0.8
895,590 + HUW76_04435 0.24 +0.3
895,599 - HUW76_04435 0.25 +0.4
895,599 - HUW76_04435 0.25 -0.2
895,607 + HUW76_04435 0.26 +0.1
895,607 + HUW76_04435 0.26 -0.3
895,607 + HUW76_04435 0.26 +0.7
895,607 + HUW76_04435 0.26 +0.4
895,607 + HUW76_04435 0.26 +0.2
895,615 - HUW76_04435 0.27 -0.1
895,661 - HUW76_04435 0.32 +0.7
895,671 + HUW76_04435 0.33 -1.8
895,671 + HUW76_04435 0.33 -1.1
895,679 - HUW76_04435 0.34 +0.6
895,733 + HUW76_04435 0.41 -0.4
895,737 + HUW76_04435 0.41 -0.3
895,788 + HUW76_04435 0.47 +0.4
895,790 + HUW76_04435 0.47 -0.0
895,790 + HUW76_04435 0.47 -1.3
895,815 - HUW76_04435 0.50 -0.3
895,819 + HUW76_04435 0.50 -0.1
895,819 + HUW76_04435 0.50 -0.6
895,827 - HUW76_04435 0.51 +0.4
895,827 - HUW76_04435 0.51 +0.3
895,879 - HUW76_04435 0.57 +0.6
896,013 - HUW76_04435 0.72 -0.6
896,130 - HUW76_04435 0.86 +0.8
896,136 + HUW76_04435 0.86 -0.2
896,161 - HUW76_04435 0.89 +0.9
896,202 + +0.2
896,202 + -0.2
896,212 + -2.1
896,212 + -1.0
896,217 - -0.2
896,229 + -0.0
896,240 + -0.2
896,240 + -0.5
896,240 + -0.8
896,240 + -0.5
896,240 + -0.8
896,240 + -1.1
896,240 + +1.4
896,240 + -0.0
896,240 + +0.8
896,247 - -0.4
896,247 - +1.1
896,248 - +1.3
896,248 - +0.8
896,248 - +3.1
896,248 - +0.7
896,248 - +1.1
896,248 - -1.5
896,248 - +0.2
896,248 - +0.3
896,248 - -0.9
896,248 - +1.0
896,248 - +0.7
896,257 + -0.6
896,257 + -1.4
896,265 - +1.2
896,265 - -0.9
896,319 + -0.4
896,416 - HUW76_04440 0.19 +0.4
896,435 + HUW76_04440 0.21 -0.2
896,467 - HUW76_04440 0.25 +1.2
896,467 - HUW76_04440 0.25 +0.5
896,467 - HUW76_04440 0.25 +1.5
896,486 + HUW76_04440 0.27 -0.4
896,494 + HUW76_04440 0.28 -0.4
896,586 - HUW76_04440 0.38 -0.2
896,586 - HUW76_04440 0.38 +0.4
896,637 + HUW76_04440 0.44 -1.7
896,637 + HUW76_04440 0.44 -1.5
896,637 + HUW76_04440 0.44 +0.5
896,643 + HUW76_04440 0.45 +0.1
896,651 - HUW76_04440 0.46 +0.4
896,725 - HUW76_04440 0.54 -0.1
896,725 - HUW76_04440 0.54 +1.2
896,733 - HUW76_04440 0.55 -0.2
896,733 - HUW76_04440 0.55 +0.6
896,741 - HUW76_04440 0.56 +1.1
896,821 + HUW76_04440 0.65 +0.2
896,821 + HUW76_04440 0.65 -0.3
896,829 - HUW76_04440 0.66 +0.7
896,829 - HUW76_04440 0.66 +0.5
896,875 - HUW76_04440 0.71 -0.1
896,875 - HUW76_04440 0.71 +2.2
896,920 + HUW76_04440 0.76 -0.8
896,920 + HUW76_04440 0.76 -0.0
897,043 + +0.2
897,043 + -0.2
897,051 - +0.8
897,088 + +0.5
897,099 + -0.9
897,107 - +0.6
897,107 - +0.0
897,116 + -0.1
897,116 + -0.2
897,123 + -0.1
897,123 + +0.8
897,124 - +2.1
897,124 - +1.3
897,124 - -0.3
897,136 - -0.9
897,136 - +0.1
897,136 - +0.4
897,138 + +0.2
897,146 - +0.3
897,160 + +0.7
897,160 + +1.2

Or see this region's nucleotide sequence