Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03430

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03420 and HUW76_03425 overlap by 47 nucleotidesHUW76_03425 and HUW76_03430 overlap by 1 nucleotidesHUW76_03430 and HUW76_03435 overlap by 20 nucleotides HUW76_03420: HUW76_03420 - hypothetical protein, at 691,459 to 692,391 _03420 HUW76_03425: HUW76_03425 - hypothetical protein, at 692,345 to 692,929 _03425 HUW76_03430: HUW76_03430 - hypothetical protein, at 692,929 to 693,279 _03430 HUW76_03435: HUW76_03435 - baseplate J/gp47 family protein, at 693,260 to 694,357 _03435 Position (kb) 692 693 694Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 691.934 kb on + strand, within HUW76_03420at 691.934 kb on + strand, within HUW76_03420at 691.934 kb on + strand, within HUW76_03420at 691.934 kb on + strand, within HUW76_03420at 691.942 kb on - strand, within HUW76_03420at 691.942 kb on - strand, within HUW76_03420at 691.998 kb on - strand, within HUW76_03420at 692.145 kb on - strand, within HUW76_03420at 692.145 kb on - strand, within HUW76_03420at 692.230 kb on - strand, within HUW76_03420at 692.530 kb on + strand, within HUW76_03425at 692.566 kb on + strand, within HUW76_03425at 692.566 kb on + strand, within HUW76_03425at 692.643 kb on - strand, within HUW76_03425at 692.689 kb on - strand, within HUW76_03425at 692.779 kb on + strand, within HUW76_03425at 692.779 kb on + strand, within HUW76_03425at 692.822 kb on + strand, within HUW76_03425at 692.857 kb on + strand, within HUW76_03425at 692.857 kb on + strand, within HUW76_03425at 692.857 kb on + strand, within HUW76_03425at 692.857 kb on + strand, within HUW76_03425at 692.865 kb on - strand, within HUW76_03425at 692.865 kb on - strand, within HUW76_03425at 692.898 kb on - strandat 692.927 kb on - strandat 692.966 kb on - strand, within HUW76_03430at 693.072 kb on + strand, within HUW76_03430at 693.111 kb on + strand, within HUW76_03430at 693.138 kb on + strand, within HUW76_03430at 693.226 kb on + strand, within HUW76_03430at 693.281 kb on + strandat 693.282 kb on - strandat 693.380 kb on - strand, within HUW76_03435at 693.451 kb on + strand, within HUW76_03435at 693.461 kb on + strand, within HUW76_03435at 693.468 kb on + strand, within HUW76_03435at 693.469 kb on - strand, within HUW76_03435at 693.473 kb on + strand, within HUW76_03435at 693.476 kb on - strand, within HUW76_03435at 693.671 kb on - strand, within HUW76_03435at 693.671 kb on - strand, within HUW76_03435at 693.673 kb on + strand, within HUW76_03435at 693.679 kb on - strand, within HUW76_03435at 693.737 kb on - strand, within HUW76_03435at 693.749 kb on - strand, within HUW76_03435at 693.784 kb on - strand, within HUW76_03435at 693.857 kb on + strand, within HUW76_03435at 693.857 kb on + strand, within HUW76_03435at 693.965 kb on + strand, within HUW76_03435at 693.965 kb on + strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 694.013 kb on + strand, within HUW76_03435at 694.021 kb on - strand, within HUW76_03435at 694.021 kb on - strand, within HUW76_03435at 694.021 kb on - strand, within HUW76_03435at 694.198 kb on + strand, within HUW76_03435at 694.199 kb on - strand, within HUW76_03435at 694.221 kb on - strand, within HUW76_03435at 694.225 kb on + strand, within HUW76_03435at 694.243 kb on - strand, within HUW76_03435at 694.261 kb on - strandat 694.262 kb on - strandat 694.262 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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691,934 + HUW76_03420 0.51 +5.1
691,934 + HUW76_03420 0.51 +2.3
691,934 + HUW76_03420 0.51 +4.5
691,934 + HUW76_03420 0.51 +6.1
691,942 - HUW76_03420 0.52 +2.7
691,942 - HUW76_03420 0.52 +0.8
691,998 - HUW76_03420 0.58 +0.1
692,145 - HUW76_03420 0.74 -0.0
692,145 - HUW76_03420 0.74 +0.9
692,230 - HUW76_03420 0.83 +1.1
692,530 + HUW76_03425 0.32 +4.0
692,566 + HUW76_03425 0.38 +4.9
692,566 + HUW76_03425 0.38 +4.8
692,643 - HUW76_03425 0.51 +0.2
692,689 - HUW76_03425 0.59 +0.4
692,779 + HUW76_03425 0.74 +4.7
692,779 + HUW76_03425 0.74 +6.1
692,822 + HUW76_03425 0.82 +3.1
692,857 + HUW76_03425 0.88 +3.9
692,857 + HUW76_03425 0.88 +3.7
692,857 + HUW76_03425 0.88 +2.7
692,857 + HUW76_03425 0.88 +5.6
692,865 - HUW76_03425 0.89 -1.2
692,865 - HUW76_03425 0.89 +0.9
692,898 - -0.0
692,927 - -0.8
692,966 - HUW76_03430 0.11 +0.7
693,072 + HUW76_03430 0.41 +2.5
693,111 + HUW76_03430 0.52 +4.0
693,138 + HUW76_03430 0.60 +2.8
693,226 + HUW76_03430 0.85 +5.1
693,281 + +4.4
693,282 - +0.1
693,380 - HUW76_03435 0.11 +0.1
693,451 + HUW76_03435 0.17 +4.2
693,461 + HUW76_03435 0.18 +3.7
693,468 + HUW76_03435 0.19 +2.9
693,469 - HUW76_03435 0.19 +0.6
693,473 + HUW76_03435 0.19 +2.5
693,476 - HUW76_03435 0.20 +1.9
693,671 - HUW76_03435 0.37 +0.6
693,671 - HUW76_03435 0.37 +1.8
693,673 + HUW76_03435 0.38 +3.2
693,679 - HUW76_03435 0.38 +0.1
693,737 - HUW76_03435 0.43 +0.7
693,749 - HUW76_03435 0.45 -0.3
693,784 - HUW76_03435 0.48 +0.3
693,857 + HUW76_03435 0.54 +3.5
693,857 + HUW76_03435 0.54 +5.5
693,965 + HUW76_03435 0.64 +5.0
693,965 + HUW76_03435 0.64 +2.8
693,973 - HUW76_03435 0.65 +0.7
693,973 - HUW76_03435 0.65 +0.8
693,973 - HUW76_03435 0.65 +2.0
693,973 - HUW76_03435 0.65 +0.6
693,973 - HUW76_03435 0.65 +1.0
693,973 - HUW76_03435 0.65 +1.3
693,973 - HUW76_03435 0.65 +0.8
694,013 + HUW76_03435 0.69 +3.2
694,021 - HUW76_03435 0.69 +0.0
694,021 - HUW76_03435 0.69 -0.7
694,021 - HUW76_03435 0.69 +1.5
694,198 + HUW76_03435 0.85 +3.1
694,199 - HUW76_03435 0.86 -1.7
694,221 - HUW76_03435 0.88 +2.4
694,225 + HUW76_03435 0.88 +3.7
694,243 - HUW76_03435 0.90 +0.4
694,261 - -0.7
694,262 - -0.1
694,262 - -0.9

Or see this region's nucleotide sequence