Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03290

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03275 and HUW76_03280 are separated by 69 nucleotidesHUW76_03280 and HUW76_03285 are separated by 135 nucleotidesHUW76_03285 and HUW76_03290 are separated by 8 nucleotidesHUW76_03290 and HUW76_03295 overlap by 29 nucleotidesHUW76_03295 and HUW76_03300 overlap by 8 nucleotidesHUW76_03300 and HUW76_03305 are separated by 1 nucleotidesHUW76_03305 and HUW76_03310 overlap by 1 nucleotides HUW76_03275: HUW76_03275 - hypothetical protein, at 672,393 to 672,620 _03275 HUW76_03280: HUW76_03280 - hypothetical protein, at 672,690 to 672,995 _03280 HUW76_03285: HUW76_03285 - hypothetical protein, at 673,131 to 673,472 _03285 HUW76_03290: HUW76_03290 - DUF3164 family protein, at 673,481 to 674,161 _03290 HUW76_03295: HUW76_03295 - DUF1018 domain-containing protein, at 674,133 to 674,519 _03295 HUW76_03300: HUW76_03300 - hypothetical protein, at 674,512 to 674,808 _03300 HUW76_03305: HUW76_03305 - hypothetical protein, at 674,810 to 675,016 _03305 HUW76_03310: HUW76_03310 - hypothetical protein, at 675,016 to 675,600 _03310 Position (kb) 673 674 675Strain fitness (log2 ratio) -1 0 1 2 3at 672.633 kb on - strandat 672.633 kb on - strandat 672.643 kb on - strandat 672.643 kb on - strandat 672.653 kb on - strandat 672.653 kb on - strandat 672.702 kb on - strandat 672.758 kb on - strand, within HUW76_03280at 672.758 kb on - strand, within HUW76_03280at 672.826 kb on - strand, within HUW76_03280at 672.836 kb on - strand, within HUW76_03280at 672.836 kb on - strand, within HUW76_03280at 672.854 kb on - strand, within HUW76_03280at 673.056 kb on - strandat 673.068 kb on - strandat 673.119 kb on + strandat 673.125 kb on + strandat 673.125 kb on + strandat 673.211 kb on + strand, within HUW76_03285at 673.258 kb on - strand, within HUW76_03285at 673.350 kb on - strand, within HUW76_03285at 673.476 kb on + strandat 673.484 kb on - strandat 673.585 kb on + strand, within HUW76_03290at 673.585 kb on + strand, within HUW76_03290at 673.629 kb on - strand, within HUW76_03290at 673.796 kb on + strand, within HUW76_03290at 673.815 kb on + strand, within HUW76_03290at 673.815 kb on + strand, within HUW76_03290at 673.817 kb on + strand, within HUW76_03290at 673.820 kb on + strand, within HUW76_03290at 673.820 kb on + strand, within HUW76_03290at 673.820 kb on + strand, within HUW76_03290at 673.820 kb on + strand, within HUW76_03290at 673.822 kb on + strand, within HUW76_03290at 673.823 kb on - strand, within HUW76_03290at 673.825 kb on + strand, within HUW76_03290at 673.825 kb on + strand, within HUW76_03290at 673.825 kb on + strand, within HUW76_03290at 673.825 kb on + strand, within HUW76_03290at 673.828 kb on - strand, within HUW76_03290at 673.841 kb on + strand, within HUW76_03290at 673.849 kb on - strand, within HUW76_03290at 673.949 kb on + strand, within HUW76_03290at 673.949 kb on + strand, within HUW76_03290at 673.949 kb on + strand, within HUW76_03290at 673.949 kb on - strand, within HUW76_03290at 673.957 kb on + strand, within HUW76_03290at 673.964 kb on - strand, within HUW76_03290at 673.964 kb on - strand, within HUW76_03290at 674.071 kb on + strand, within HUW76_03290at 674.071 kb on + strand, within HUW76_03290at 674.071 kb on + strand, within HUW76_03290at 674.071 kb on + strand, within HUW76_03290at 674.071 kb on + strand, within HUW76_03290at 674.071 kb on + strand, within HUW76_03290at 674.071 kb on + strand, within HUW76_03290at 674.071 kb on + strand, within HUW76_03290at 674.071 kb on + strand, within HUW76_03290at 674.079 kb on - strand, within HUW76_03290at 674.079 kb on - strand, within HUW76_03290at 674.079 kb on - strand, within HUW76_03290at 674.079 kb on - strand, within HUW76_03290at 674.123 kb on - strandat 674.123 kb on - strandat 674.123 kb on - strandat 674.260 kb on + strand, within HUW76_03295at 674.260 kb on + strand, within HUW76_03295at 674.260 kb on + strand, within HUW76_03295at 674.263 kb on - strand, within HUW76_03295at 674.268 kb on - strand, within HUW76_03295at 674.268 kb on - strand, within HUW76_03295at 674.268 kb on - strand, within HUW76_03295at 674.299 kb on + strand, within HUW76_03295at 674.299 kb on + strand, within HUW76_03295at 674.399 kb on + strand, within HUW76_03295at 674.401 kb on + strand, within HUW76_03295at 674.414 kb on - strand, within HUW76_03295at 674.414 kb on - strand, within HUW76_03295at 674.434 kb on + strand, within HUW76_03295at 674.436 kb on + strand, within HUW76_03295at 674.436 kb on + strand, within HUW76_03295at 674.436 kb on + strand, within HUW76_03295at 674.444 kb on - strand, within HUW76_03295at 674.605 kb on - strand, within HUW76_03300at 674.605 kb on - strand, within HUW76_03300at 674.769 kb on - strand, within HUW76_03300at 674.769 kb on - strand, within HUW76_03300at 674.769 kb on - strand, within HUW76_03300at 674.794 kb on - strandat 674.794 kb on - strandat 674.918 kb on + strand, within HUW76_03305at 674.925 kb on + strand, within HUW76_03305at 674.926 kb on - strand, within HUW76_03305at 674.926 kb on - strand, within HUW76_03305at 675.067 kb on - strandat 675.067 kb on - strandat 675.106 kb on - strand, within HUW76_03310at 675.139 kb on - strand, within HUW76_03310at 675.139 kb on - strand, within HUW76_03310

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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672,633 - +1.4
672,633 - -0.8
672,643 - -0.1
672,643 - -1.5
672,653 - +1.2
672,653 - +1.4
672,702 - +1.7
672,758 - HUW76_03280 0.22 +1.9
672,758 - HUW76_03280 0.22 -1.3
672,826 - HUW76_03280 0.44 -0.3
672,836 - HUW76_03280 0.48 +1.2
672,836 - HUW76_03280 0.48 +1.1
672,854 - HUW76_03280 0.54 +0.8
673,056 - -0.7
673,068 - -0.7
673,119 + +1.5
673,125 + +1.7
673,125 + +1.0
673,211 + HUW76_03285 0.23 +3.1
673,258 - HUW76_03285 0.37 +0.7
673,350 - HUW76_03285 0.64 -0.9
673,476 + +0.6
673,484 - +0.8
673,585 + HUW76_03290 0.15 +0.5
673,585 + HUW76_03290 0.15 +0.9
673,629 - HUW76_03290 0.22 +0.2
673,796 + HUW76_03290 0.46 +1.0
673,815 + HUW76_03290 0.49 +1.2
673,815 + HUW76_03290 0.49 +0.7
673,817 + HUW76_03290 0.49 +0.6
673,820 + HUW76_03290 0.50 +0.8
673,820 + HUW76_03290 0.50 +0.7
673,820 + HUW76_03290 0.50 +0.7
673,820 + HUW76_03290 0.50 +0.1
673,822 + HUW76_03290 0.50 +1.1
673,823 - HUW76_03290 0.50 +1.2
673,825 + HUW76_03290 0.51 +0.4
673,825 + HUW76_03290 0.51 +0.7
673,825 + HUW76_03290 0.51 +0.8
673,825 + HUW76_03290 0.51 +0.4
673,828 - HUW76_03290 0.51 +0.3
673,841 + HUW76_03290 0.53 +0.5
673,849 - HUW76_03290 0.54 +1.6
673,949 + HUW76_03290 0.69 +0.9
673,949 + HUW76_03290 0.69 +1.2
673,949 + HUW76_03290 0.69 +1.0
673,949 - HUW76_03290 0.69 +0.2
673,957 + HUW76_03290 0.70 +0.5
673,964 - HUW76_03290 0.71 +0.3
673,964 - HUW76_03290 0.71 +0.6
674,071 + HUW76_03290 0.87 +0.7
674,071 + HUW76_03290 0.87 +0.9
674,071 + HUW76_03290 0.87 +0.7
674,071 + HUW76_03290 0.87 +0.7
674,071 + HUW76_03290 0.87 +0.4
674,071 + HUW76_03290 0.87 +0.9
674,071 + HUW76_03290 0.87 +0.5
674,071 + HUW76_03290 0.87 +0.1
674,071 + HUW76_03290 0.87 +0.4
674,079 - HUW76_03290 0.88 -0.1
674,079 - HUW76_03290 0.88 +1.8
674,079 - HUW76_03290 0.88 +0.9
674,079 - HUW76_03290 0.88 +0.2
674,123 - +1.0
674,123 - +0.3
674,123 - +0.2
674,260 + HUW76_03295 0.33 +0.7
674,260 + HUW76_03295 0.33 +1.5
674,260 + HUW76_03295 0.33 +0.8
674,263 - HUW76_03295 0.34 +0.4
674,268 - HUW76_03295 0.35 -0.6
674,268 - HUW76_03295 0.35 -1.4
674,268 - HUW76_03295 0.35 +0.4
674,299 + HUW76_03295 0.43 +0.7
674,299 + HUW76_03295 0.43 +0.5
674,399 + HUW76_03295 0.69 +0.2
674,401 + HUW76_03295 0.69 +1.8
674,414 - HUW76_03295 0.73 +1.4
674,414 - HUW76_03295 0.73 -1.2
674,434 + HUW76_03295 0.78 +1.6
674,436 + HUW76_03295 0.78 +0.8
674,436 + HUW76_03295 0.78 +1.8
674,436 + HUW76_03295 0.78 +1.5
674,444 - HUW76_03295 0.80 -0.2
674,605 - HUW76_03300 0.31 +0.2
674,605 - HUW76_03300 0.31 +1.3
674,769 - HUW76_03300 0.87 -0.2
674,769 - HUW76_03300 0.87 +1.0
674,769 - HUW76_03300 0.87 +0.9
674,794 - +1.0
674,794 - +0.3
674,918 + HUW76_03305 0.52 -0.1
674,925 + HUW76_03305 0.56 +1.1
674,926 - HUW76_03305 0.56 +0.7
674,926 - HUW76_03305 0.56 +0.0
675,067 - -0.0
675,067 - -0.3
675,106 - HUW76_03310 0.15 -0.7
675,139 - HUW76_03310 0.21 +1.0
675,139 - HUW76_03310 0.21 -1.2

Or see this region's nucleotide sequence