Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02955

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02950 and HUW76_02955 are separated by 16 nucleotidesHUW76_02955 and HUW76_02960 are separated by 11 nucleotides HUW76_02950: HUW76_02950 - magnesium/cobalt transporter CorA, at 600,820 to 601,875 _02950 HUW76_02955: HUW76_02955 - glycerol-3-phosphate responsive antiterminator, at 601,892 to 602,452 _02955 HUW76_02960: HUW76_02960 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 602,464 to 603,711 _02960 Position (kb) 601 602 603Strain fitness (log2 ratio) -1 0 1 2 3 4at 600.948 kb on + strand, within HUW76_02950at 600.978 kb on - strand, within HUW76_02950at 601.027 kb on - strand, within HUW76_02950at 601.034 kb on + strand, within HUW76_02950at 601.061 kb on - strand, within HUW76_02950at 601.061 kb on - strand, within HUW76_02950at 601.061 kb on - strand, within HUW76_02950at 601.061 kb on - strand, within HUW76_02950at 601.061 kb on - strand, within HUW76_02950at 601.067 kb on + strand, within HUW76_02950at 601.067 kb on + strand, within HUW76_02950at 601.075 kb on + strand, within HUW76_02950at 601.085 kb on - strand, within HUW76_02950at 601.085 kb on - strand, within HUW76_02950at 601.103 kb on - strand, within HUW76_02950at 601.168 kb on + strand, within HUW76_02950at 601.168 kb on + strand, within HUW76_02950at 601.213 kb on + strand, within HUW76_02950at 601.213 kb on + strand, within HUW76_02950at 601.223 kb on + strand, within HUW76_02950at 601.223 kb on + strand, within HUW76_02950at 601.274 kb on + strand, within HUW76_02950at 601.274 kb on + strand, within HUW76_02950at 601.281 kb on - strand, within HUW76_02950at 601.281 kb on - strand, within HUW76_02950at 601.317 kb on - strand, within HUW76_02950at 601.329 kb on + strand, within HUW76_02950at 601.358 kb on + strand, within HUW76_02950at 601.433 kb on + strand, within HUW76_02950at 601.493 kb on + strand, within HUW76_02950at 601.493 kb on + strand, within HUW76_02950at 601.559 kb on - strand, within HUW76_02950at 601.609 kb on - strand, within HUW76_02950at 601.614 kb on + strand, within HUW76_02950at 601.614 kb on + strand, within HUW76_02950at 601.622 kb on - strand, within HUW76_02950at 601.665 kb on + strand, within HUW76_02950at 601.673 kb on - strand, within HUW76_02950at 601.682 kb on - strand, within HUW76_02950at 601.692 kb on - strand, within HUW76_02950at 601.712 kb on + strand, within HUW76_02950at 601.720 kb on - strand, within HUW76_02950at 601.722 kb on - strand, within HUW76_02950at 601.823 kb on + strandat 601.835 kb on + strandat 601.835 kb on + strandat 601.843 kb on - strandat 601.843 kb on - strandat 601.843 kb on - strandat 601.843 kb on - strandat 601.851 kb on - strandat 601.889 kb on + strandat 602.005 kb on + strand, within HUW76_02955at 602.005 kb on + strand, within HUW76_02955at 602.051 kb on - strand, within HUW76_02955at 602.051 kb on - strand, within HUW76_02955at 602.176 kb on + strand, within HUW76_02955at 602.176 kb on + strand, within HUW76_02955at 602.190 kb on + strand, within HUW76_02955at 602.190 kb on + strand, within HUW76_02955at 602.192 kb on + strand, within HUW76_02955at 602.192 kb on + strand, within HUW76_02955at 602.214 kb on + strand, within HUW76_02955at 602.214 kb on - strand, within HUW76_02955at 602.214 kb on - strand, within HUW76_02955at 602.226 kb on - strand, within HUW76_02955at 602.226 kb on - strand, within HUW76_02955at 602.226 kb on - strand, within HUW76_02955at 602.235 kb on - strand, within HUW76_02955at 602.235 kb on - strand, within HUW76_02955at 602.236 kb on - strand, within HUW76_02955at 602.236 kb on - strand, within HUW76_02955at 602.249 kb on + strand, within HUW76_02955at 602.539 kb on - strandat 602.539 kb on - strandat 602.541 kb on + strandat 602.542 kb on - strandat 602.544 kb on - strandat 602.544 kb on - strandat 602.544 kb on - strandat 602.544 kb on - strandat 602.549 kb on + strandat 602.549 kb on - strandat 602.549 kb on - strandat 602.549 kb on - strandat 602.576 kb on + strandat 602.576 kb on + strandat 602.651 kb on + strand, within HUW76_02960at 602.837 kb on + strand, within HUW76_02960at 602.874 kb on + strand, within HUW76_02960at 602.874 kb on + strand, within HUW76_02960at 602.943 kb on + strand, within HUW76_02960at 602.943 kb on + strand, within HUW76_02960at 602.951 kb on - strand, within HUW76_02960at 603.021 kb on - strand, within HUW76_02960at 603.102 kb on + strand, within HUW76_02960at 603.102 kb on + strand, within HUW76_02960at 603.135 kb on + strand, within HUW76_02960at 603.204 kb on - strand, within HUW76_02960at 603.318 kb on - strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.360 kb on - strand, within HUW76_02960at 603.360 kb on - strand, within HUW76_02960at 603.360 kb on - strand, within HUW76_02960at 603.360 kb on - strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.364 kb on + strand, within HUW76_02960at 603.364 kb on + strand, within HUW76_02960at 603.370 kb on - strand, within HUW76_02960at 603.370 kb on - strand, within HUW76_02960at 603.370 kb on - strand, within HUW76_02960at 603.370 kb on - strand, within HUW76_02960at 603.372 kb on - strand, within HUW76_02960at 603.377 kb on - strand, within HUW76_02960at 603.417 kb on - strand, within HUW76_02960at 603.417 kb on - strand, within HUW76_02960at 603.436 kb on - strand, within HUW76_02960

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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600,948 + HUW76_02950 0.12 +0.6
600,978 - HUW76_02950 0.15 -0.3
601,027 - HUW76_02950 0.20 -0.1
601,034 + HUW76_02950 0.20 +0.4
601,061 - HUW76_02950 0.23 -0.0
601,061 - HUW76_02950 0.23 -0.7
601,061 - HUW76_02950 0.23 -1.2
601,061 - HUW76_02950 0.23 +0.7
601,061 - HUW76_02950 0.23 +0.1
601,067 + HUW76_02950 0.23 +1.2
601,067 + HUW76_02950 0.23 +0.2
601,075 + HUW76_02950 0.24 +0.6
601,085 - HUW76_02950 0.25 -1.1
601,085 - HUW76_02950 0.25 +0.1
601,103 - HUW76_02950 0.27 -0.4
601,168 + HUW76_02950 0.33 +0.3
601,168 + HUW76_02950 0.33 +0.6
601,213 + HUW76_02950 0.37 +0.9
601,213 + HUW76_02950 0.37 -1.2
601,223 + HUW76_02950 0.38 +0.8
601,223 + HUW76_02950 0.38 +0.1
601,274 + HUW76_02950 0.43 -0.1
601,274 + HUW76_02950 0.43 +1.3
601,281 - HUW76_02950 0.44 +0.2
601,281 - HUW76_02950 0.44 -0.1
601,317 - HUW76_02950 0.47 -0.0
601,329 + HUW76_02950 0.48 +0.9
601,358 + HUW76_02950 0.51 +0.5
601,433 + HUW76_02950 0.58 +0.1
601,493 + HUW76_02950 0.64 +1.1
601,493 + HUW76_02950 0.64 -0.3
601,559 - HUW76_02950 0.70 +0.1
601,609 - HUW76_02950 0.75 -0.4
601,614 + HUW76_02950 0.75 +0.5
601,614 + HUW76_02950 0.75 +1.1
601,622 - HUW76_02950 0.76 -0.4
601,665 + HUW76_02950 0.80 +0.6
601,673 - HUW76_02950 0.81 -0.2
601,682 - HUW76_02950 0.82 -0.1
601,692 - HUW76_02950 0.83 -0.9
601,712 + HUW76_02950 0.84 +1.1
601,720 - HUW76_02950 0.85 -0.3
601,722 - HUW76_02950 0.85 -0.5
601,823 + +0.5
601,835 + -0.2
601,835 + -0.0
601,843 - -0.3
601,843 - -0.2
601,843 - +0.2
601,843 - -0.2
601,851 - +0.2
601,889 + -0.3
602,005 + HUW76_02955 0.20 +0.3
602,005 + HUW76_02955 0.20 +1.0
602,051 - HUW76_02955 0.28 +2.0
602,051 - HUW76_02955 0.28 +0.5
602,176 + HUW76_02955 0.51 +1.5
602,176 + HUW76_02955 0.51 +0.3
602,190 + HUW76_02955 0.53 +2.3
602,190 + HUW76_02955 0.53 -0.1
602,192 + HUW76_02955 0.53 +0.6
602,192 + HUW76_02955 0.53 -0.2
602,214 + HUW76_02955 0.57 +2.0
602,214 - HUW76_02955 0.57 +1.0
602,214 - HUW76_02955 0.57 +1.4
602,226 - HUW76_02955 0.60 +0.5
602,226 - HUW76_02955 0.60 +0.3
602,226 - HUW76_02955 0.60 +0.7
602,235 - HUW76_02955 0.61 +0.4
602,235 - HUW76_02955 0.61 +0.6
602,236 - HUW76_02955 0.61 +0.6
602,236 - HUW76_02955 0.61 +2.1
602,249 + HUW76_02955 0.64 +0.1
602,539 - -0.4
602,539 - +0.7
602,541 + -0.3
602,542 - +0.6
602,544 - -1.7
602,544 - -0.2
602,544 - +1.2
602,544 - +0.8
602,549 + +2.1
602,549 - +0.5
602,549 - +0.2
602,549 - -0.0
602,576 + +0.5
602,576 + -0.5
602,651 + HUW76_02960 0.15 +4.7
602,837 + HUW76_02960 0.30 +0.7
602,874 + HUW76_02960 0.33 +0.3
602,874 + HUW76_02960 0.33 +1.7
602,943 + HUW76_02960 0.38 +1.0
602,943 + HUW76_02960 0.38 +0.5
602,951 - HUW76_02960 0.39 +0.3
603,021 - HUW76_02960 0.45 +0.5
603,102 + HUW76_02960 0.51 +1.0
603,102 + HUW76_02960 0.51 -0.3
603,135 + HUW76_02960 0.54 +0.2
603,204 - HUW76_02960 0.59 -0.0
603,318 - HUW76_02960 0.68 +0.6
603,352 + HUW76_02960 0.71 +0.8
603,352 + HUW76_02960 0.71 +1.5
603,352 + HUW76_02960 0.71 +0.5
603,352 + HUW76_02960 0.71 +0.0
603,352 + HUW76_02960 0.71 +1.2
603,352 + HUW76_02960 0.71 +0.0
603,352 + HUW76_02960 0.71 +0.8
603,352 + HUW76_02960 0.71 +0.7
603,360 - HUW76_02960 0.72 +0.0
603,360 - HUW76_02960 0.72 +0.2
603,360 - HUW76_02960 0.72 -0.4
603,360 - HUW76_02960 0.72 +0.7
603,362 + HUW76_02960 0.72 +1.1
603,362 + HUW76_02960 0.72 +0.8
603,362 + HUW76_02960 0.72 -0.9
603,362 + HUW76_02960 0.72 +1.1
603,362 + HUW76_02960 0.72 +0.8
603,362 + HUW76_02960 0.72 +2.0
603,362 + HUW76_02960 0.72 +2.3
603,362 + HUW76_02960 0.72 +1.0
603,364 + HUW76_02960 0.72 +0.2
603,364 + HUW76_02960 0.72 +0.1
603,370 - HUW76_02960 0.73 -0.2
603,370 - HUW76_02960 0.73 -0.2
603,370 - HUW76_02960 0.73 +0.3
603,370 - HUW76_02960 0.73 +0.5
603,372 - HUW76_02960 0.73 -0.1
603,377 - HUW76_02960 0.73 +0.6
603,417 - HUW76_02960 0.76 -0.0
603,417 - HUW76_02960 0.76 +0.3
603,436 - HUW76_02960 0.78 +0.1

Or see this region's nucleotide sequence