Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02780

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02770 and HUW76_02775 are separated by 15 nucleotidesHUW76_02775 and HUW76_02780 are separated by 50 nucleotidesHUW76_02780 and HUW76_02785 are separated by 221 nucleotidesHUW76_02785 and HUW76_02790 are separated by 255 nucleotidesHUW76_02790 and HUW76_02795 are separated by 43 nucleotides HUW76_02770: HUW76_02770 - hypothetical protein, at 569,490 to 570,155 _02770 HUW76_02775: HUW76_02775 - hypothetical protein, at 570,171 to 570,500 _02775 HUW76_02780: HUW76_02780 - hypothetical protein, at 570,551 to 570,691 _02780 HUW76_02785: HUW76_02785 - hypothetical protein, at 570,913 to 571,077 _02785 HUW76_02790: HUW76_02790 - hypothetical protein, at 571,333 to 571,611 _02790 HUW76_02795: HUW76_02795 - hypothetical protein, at 571,655 to 571,915 _02795 Position (kb) 570 571Strain fitness (log2 ratio) -1 0 1 2at 569.557 kb on - strand, within HUW76_02770at 569.557 kb on - strand, within HUW76_02770at 569.560 kb on + strand, within HUW76_02770at 569.570 kb on + strand, within HUW76_02770at 569.570 kb on + strand, within HUW76_02770at 569.613 kb on - strand, within HUW76_02770at 569.754 kb on - strand, within HUW76_02770at 569.759 kb on - strand, within HUW76_02770at 569.997 kb on + strand, within HUW76_02770at 570.005 kb on + strand, within HUW76_02770at 570.005 kb on + strand, within HUW76_02770at 570.005 kb on + strand, within HUW76_02770at 570.013 kb on - strand, within HUW76_02770at 570.013 kb on - strand, within HUW76_02770at 570.024 kb on + strand, within HUW76_02770at 570.052 kb on + strand, within HUW76_02770at 570.052 kb on + strand, within HUW76_02770at 570.206 kb on - strand, within HUW76_02775at 570.218 kb on + strand, within HUW76_02775at 570.218 kb on + strand, within HUW76_02775at 570.218 kb on + strand, within HUW76_02775at 570.218 kb on + strand, within HUW76_02775at 570.283 kb on + strand, within HUW76_02775at 570.283 kb on + strand, within HUW76_02775at 570.292 kb on + strand, within HUW76_02775at 570.318 kb on + strand, within HUW76_02775at 570.318 kb on + strand, within HUW76_02775at 570.318 kb on + strand, within HUW76_02775at 570.318 kb on + strand, within HUW76_02775at 570.318 kb on + strand, within HUW76_02775at 570.320 kb on + strand, within HUW76_02775at 570.326 kb on - strand, within HUW76_02775at 570.326 kb on - strand, within HUW76_02775at 570.336 kb on - strand, within HUW76_02775at 570.342 kb on + strand, within HUW76_02775at 570.342 kb on + strand, within HUW76_02775at 570.349 kb on + strand, within HUW76_02775at 570.350 kb on - strand, within HUW76_02775at 570.411 kb on + strand, within HUW76_02775at 570.437 kb on + strand, within HUW76_02775at 570.437 kb on + strand, within HUW76_02775at 570.443 kb on + strand, within HUW76_02775at 570.443 kb on + strand, within HUW76_02775at 570.481 kb on + strandat 570.481 kb on + strandat 570.528 kb on + strandat 570.606 kb on + strand, within HUW76_02780at 570.606 kb on + strand, within HUW76_02780at 570.619 kb on - strand, within HUW76_02780at 570.684 kb on + strandat 570.692 kb on + strandat 570.692 kb on + strandat 570.692 kb on - strandat 570.701 kb on + strandat 570.701 kb on + strandat 570.701 kb on + strandat 570.709 kb on - strandat 570.803 kb on - strandat 571.227 kb on + strandat 571.250 kb on + strandat 571.259 kb on + strandat 571.259 kb on + strandat 571.259 kb on + strandat 571.267 kb on - strandat 571.267 kb on - strandat 571.267 kb on - strandat 571.267 kb on - strandat 571.267 kb on - strandat 571.291 kb on + strandat 571.315 kb on + strandat 571.315 kb on + strandat 571.315 kb on + strandat 571.318 kb on + strandat 571.318 kb on + strandat 571.323 kb on - strandat 571.323 kb on - strandat 571.323 kb on - strandat 571.370 kb on + strand, within HUW76_02790at 571.370 kb on + strand, within HUW76_02790at 571.370 kb on + strand, within HUW76_02790at 571.370 kb on + strand, within HUW76_02790at 571.370 kb on + strand, within HUW76_02790at 571.370 kb on + strand, within HUW76_02790at 571.370 kb on + strand, within HUW76_02790at 571.370 kb on + strand, within HUW76_02790at 571.378 kb on - strand, within HUW76_02790at 571.378 kb on - strand, within HUW76_02790at 571.378 kb on - strand, within HUW76_02790at 571.378 kb on - strand, within HUW76_02790at 571.470 kb on - strand, within HUW76_02790at 571.487 kb on + strand, within HUW76_02790at 571.495 kb on + strand, within HUW76_02790at 571.495 kb on + strand, within HUW76_02790at 571.497 kb on + strand, within HUW76_02790at 571.497 kb on + strand, within HUW76_02790at 571.497 kb on + strand, within HUW76_02790at 571.497 kb on + strand, within HUW76_02790at 571.503 kb on - strand, within HUW76_02790at 571.505 kb on - strand, within HUW76_02790at 571.530 kb on + strand, within HUW76_02790at 571.530 kb on + strand, within HUW76_02790at 571.538 kb on - strand, within HUW76_02790at 571.538 kb on - strand, within HUW76_02790at 571.538 kb on - strand, within HUW76_02790at 571.574 kb on - strand, within HUW76_02790

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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569,557 - HUW76_02770 0.10 -0.2
569,557 - HUW76_02770 0.10 +0.7
569,560 + HUW76_02770 0.11 +0.6
569,570 + HUW76_02770 0.12 -0.3
569,570 + HUW76_02770 0.12 +1.7
569,613 - HUW76_02770 0.18 +0.3
569,754 - HUW76_02770 0.40 +1.7
569,759 - HUW76_02770 0.40 +1.7
569,997 + HUW76_02770 0.76 -0.0
570,005 + HUW76_02770 0.77 -0.8
570,005 + HUW76_02770 0.77 +1.0
570,005 + HUW76_02770 0.77 -0.4
570,013 - HUW76_02770 0.79 +0.1
570,013 - HUW76_02770 0.79 +1.2
570,024 + HUW76_02770 0.80 +0.0
570,052 + HUW76_02770 0.84 -1.6
570,052 + HUW76_02770 0.84 -1.4
570,206 - HUW76_02775 0.11 +2.3
570,218 + HUW76_02775 0.14 -0.1
570,218 + HUW76_02775 0.14 -0.7
570,218 + HUW76_02775 0.14 +0.2
570,218 + HUW76_02775 0.14 -0.6
570,283 + HUW76_02775 0.34 -1.6
570,283 + HUW76_02775 0.34 -0.8
570,292 + HUW76_02775 0.37 +0.1
570,318 + HUW76_02775 0.45 +0.7
570,318 + HUW76_02775 0.45 -1.0
570,318 + HUW76_02775 0.45 +0.8
570,318 + HUW76_02775 0.45 -0.5
570,318 + HUW76_02775 0.45 +0.3
570,320 + HUW76_02775 0.45 -0.2
570,326 - HUW76_02775 0.47 +1.7
570,326 - HUW76_02775 0.47 +0.4
570,336 - HUW76_02775 0.50 +0.2
570,342 + HUW76_02775 0.52 -1.2
570,342 + HUW76_02775 0.52 +0.1
570,349 + HUW76_02775 0.54 -0.1
570,350 - HUW76_02775 0.54 +1.0
570,411 + HUW76_02775 0.73 -1.0
570,437 + HUW76_02775 0.81 -0.1
570,437 + HUW76_02775 0.81 +0.1
570,443 + HUW76_02775 0.82 +0.1
570,443 + HUW76_02775 0.82 -0.3
570,481 + +0.2
570,481 + -0.2
570,528 + -0.2
570,606 + HUW76_02780 0.39 +0.5
570,606 + HUW76_02780 0.39 +0.5
570,619 - HUW76_02780 0.48 +1.6
570,684 + -0.1
570,692 + -0.7
570,692 + -0.1
570,692 - +0.9
570,701 + -0.3
570,701 + -0.3
570,701 + -0.5
570,709 - +1.7
570,803 - +1.7
571,227 + -1.0
571,250 + -0.5
571,259 + +1.1
571,259 + +0.0
571,259 + +0.1
571,267 - -0.5
571,267 - -0.3
571,267 - -0.2
571,267 - -0.1
571,267 - -0.3
571,291 + +0.2
571,315 + -0.2
571,315 + -0.1
571,315 + -0.3
571,318 + -1.4
571,318 + +0.3
571,323 - -0.6
571,323 - -0.4
571,323 - -0.5
571,370 + HUW76_02790 0.13 +0.4
571,370 + HUW76_02790 0.13 -0.1
571,370 + HUW76_02790 0.13 +0.3
571,370 + HUW76_02790 0.13 +0.7
571,370 + HUW76_02790 0.13 -0.5
571,370 + HUW76_02790 0.13 -0.1
571,370 + HUW76_02790 0.13 -0.7
571,370 + HUW76_02790 0.13 -1.2
571,378 - HUW76_02790 0.16 -0.3
571,378 - HUW76_02790 0.16 +0.3
571,378 - HUW76_02790 0.16 -0.8
571,378 - HUW76_02790 0.16 -0.9
571,470 - HUW76_02790 0.49 +1.0
571,487 + HUW76_02790 0.55 -1.1
571,495 + HUW76_02790 0.58 -0.6
571,495 + HUW76_02790 0.58 -0.5
571,497 + HUW76_02790 0.59 -0.2
571,497 + HUW76_02790 0.59 +0.2
571,497 + HUW76_02790 0.59 +0.5
571,497 + HUW76_02790 0.59 -0.6
571,503 - HUW76_02790 0.61 -0.9
571,505 - HUW76_02790 0.62 +0.3
571,530 + HUW76_02790 0.71 -0.3
571,530 + HUW76_02790 0.71 +0.4
571,538 - HUW76_02790 0.73 +2.1
571,538 - HUW76_02790 0.73 +2.7
571,538 - HUW76_02790 0.73 -0.6
571,574 - HUW76_02790 0.86 +0.7

Or see this region's nucleotide sequence