Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02305

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02295 and HUW76_02300 are separated by 128 nucleotidesHUW76_02300 and HUW76_02305 are separated by 90 nucleotidesHUW76_02305 and HUW76_02310 are separated by 56 nucleotidesHUW76_02310 and HUW76_02315 are separated by 249 nucleotides HUW76_02295: HUW76_02295 - N-acetylmuramoyl-L-alanine amidase, at 464,561 to 465,457 _02295 HUW76_02300: HUW76_02300 - GNAT family N-acetyltransferase, at 465,586 to 466,083 _02300 HUW76_02305: HUW76_02305 - hypothetical protein, at 466,174 to 466,458 _02305 HUW76_02310: HUW76_02310 - hypothetical protein, at 466,515 to 467,042 _02310 HUW76_02315: HUW76_02315 - hypothetical protein, at 467,292 to 467,783 _02315 Position (kb) 466 467Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 465.318 kb on + strand, within HUW76_02295at 465.318 kb on + strand, within HUW76_02295at 465.342 kb on + strand, within HUW76_02295at 465.352 kb on + strand, within HUW76_02295at 465.352 kb on + strand, within HUW76_02295at 465.352 kb on + strand, within HUW76_02295at 465.352 kb on + strand, within HUW76_02295at 465.352 kb on + strand, within HUW76_02295at 465.352 kb on + strand, within HUW76_02295at 465.352 kb on + strand, within HUW76_02295at 465.357 kb on + strand, within HUW76_02295at 465.357 kb on + strand, within HUW76_02295at 465.357 kb on + strand, within HUW76_02295at 465.452 kb on + strandat 465.637 kb on + strand, within HUW76_02300at 465.637 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.719 kb on + strand, within HUW76_02300at 465.727 kb on - strand, within HUW76_02300at 465.727 kb on - strand, within HUW76_02300at 465.727 kb on - strand, within HUW76_02300at 465.727 kb on - strand, within HUW76_02300at 465.727 kb on - strand, within HUW76_02300at 465.727 kb on - strand, within HUW76_02300at 465.727 kb on - strand, within HUW76_02300at 465.727 kb on - strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.732 kb on + strand, within HUW76_02300at 465.740 kb on - strand, within HUW76_02300at 465.800 kb on - strand, within HUW76_02300at 465.800 kb on - strand, within HUW76_02300at 465.817 kb on + strand, within HUW76_02300at 465.846 kb on - strand, within HUW76_02300at 465.883 kb on + strand, within HUW76_02300at 465.883 kb on + strand, within HUW76_02300at 465.955 kb on + strand, within HUW76_02300at 465.958 kb on - strand, within HUW76_02300at 465.958 kb on - strand, within HUW76_02300at 466.005 kb on + strand, within HUW76_02300at 466.057 kb on + strandat 466.160 kb on - strandat 466.271 kb on + strand, within HUW76_02305at 466.312 kb on - strand, within HUW76_02305at 466.312 kb on - strand, within HUW76_02305at 466.408 kb on + strand, within HUW76_02305at 466.471 kb on + strandat 466.471 kb on + strandat 466.510 kb on + strandat 466.546 kb on + strandat 466.648 kb on - strand, within HUW76_02310at 466.648 kb on - strand, within HUW76_02310at 466.673 kb on + strand, within HUW76_02310at 466.681 kb on - strand, within HUW76_02310at 466.681 kb on - strand, within HUW76_02310at 466.712 kb on + strand, within HUW76_02310at 466.712 kb on + strand, within HUW76_02310at 466.721 kb on + strand, within HUW76_02310at 466.721 kb on + strand, within HUW76_02310at 466.861 kb on + strand, within HUW76_02310at 467.067 kb on + strandat 467.083 kb on - strandat 467.219 kb on - strandat 467.251 kb on + strandat 467.265 kb on - strandat 467.265 kb on - strandat 467.390 kb on + strand, within HUW76_02315at 467.390 kb on + strand, within HUW76_02315at 467.426 kb on + strand, within HUW76_02315

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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465,318 + HUW76_02295 0.84 +0.7
465,318 + HUW76_02295 0.84 -0.0
465,342 + HUW76_02295 0.87 +0.6
465,352 + HUW76_02295 0.88 +1.4
465,352 + HUW76_02295 0.88 +0.9
465,352 + HUW76_02295 0.88 +1.4
465,352 + HUW76_02295 0.88 +0.9
465,352 + HUW76_02295 0.88 +1.8
465,352 + HUW76_02295 0.88 +4.0
465,352 + HUW76_02295 0.88 +0.0
465,357 + HUW76_02295 0.89 +0.8
465,357 + HUW76_02295 0.89 +0.3
465,357 + HUW76_02295 0.89 +0.4
465,452 + -0.2
465,637 + HUW76_02300 0.10 -0.3
465,637 + HUW76_02300 0.10 -0.9
465,719 + HUW76_02300 0.27 -0.1
465,719 + HUW76_02300 0.27 -0.5
465,719 + HUW76_02300 0.27 +0.7
465,719 + HUW76_02300 0.27 -0.6
465,719 + HUW76_02300 0.27 -0.1
465,719 + HUW76_02300 0.27 +0.5
465,719 + HUW76_02300 0.27 -0.1
465,719 + HUW76_02300 0.27 -0.0
465,719 + HUW76_02300 0.27 -0.6
465,719 + HUW76_02300 0.27 -0.7
465,719 + HUW76_02300 0.27 -0.3
465,719 + HUW76_02300 0.27 +0.0
465,719 + HUW76_02300 0.27 -0.1
465,719 + HUW76_02300 0.27 -0.2
465,727 - HUW76_02300 0.28 +0.1
465,727 - HUW76_02300 0.28 +2.0
465,727 - HUW76_02300 0.28 +0.2
465,727 - HUW76_02300 0.28 +1.2
465,727 - HUW76_02300 0.28 +0.8
465,727 - HUW76_02300 0.28 +1.8
465,727 - HUW76_02300 0.28 +0.8
465,727 - HUW76_02300 0.28 +1.6
465,732 + HUW76_02300 0.29 -0.6
465,732 + HUW76_02300 0.29 -0.2
465,732 + HUW76_02300 0.29 +0.3
465,732 + HUW76_02300 0.29 -0.3
465,732 + HUW76_02300 0.29 -0.2
465,732 + HUW76_02300 0.29 -2.3
465,732 + HUW76_02300 0.29 -0.1
465,732 + HUW76_02300 0.29 -0.6
465,732 + HUW76_02300 0.29 -0.8
465,732 + HUW76_02300 0.29 -0.3
465,732 + HUW76_02300 0.29 -0.6
465,740 - HUW76_02300 0.31 +1.6
465,800 - HUW76_02300 0.43 +1.5
465,800 - HUW76_02300 0.43 +0.9
465,817 + HUW76_02300 0.46 +0.2
465,846 - HUW76_02300 0.52 +0.6
465,883 + HUW76_02300 0.60 -0.6
465,883 + HUW76_02300 0.60 -0.1
465,955 + HUW76_02300 0.74 -0.7
465,958 - HUW76_02300 0.75 +1.0
465,958 - HUW76_02300 0.75 -0.2
466,005 + HUW76_02300 0.84 +0.3
466,057 + -0.6
466,160 - -0.3
466,271 + HUW76_02305 0.34 +0.7
466,312 - HUW76_02305 0.48 +2.0
466,312 - HUW76_02305 0.48 +1.1
466,408 + HUW76_02305 0.82 +0.6
466,471 + -1.1
466,471 + -0.1
466,510 + -1.0
466,546 + -0.1
466,648 - HUW76_02310 0.25 +0.9
466,648 - HUW76_02310 0.25 +1.5
466,673 + HUW76_02310 0.30 +0.7
466,681 - HUW76_02310 0.31 +1.8
466,681 - HUW76_02310 0.31 -0.2
466,712 + HUW76_02310 0.37 +0.0
466,712 + HUW76_02310 0.37 +0.3
466,721 + HUW76_02310 0.39 -1.1
466,721 + HUW76_02310 0.39 +1.8
466,861 + HUW76_02310 0.66 -0.7
467,067 + +0.4
467,083 - -0.1
467,219 - +0.2
467,251 + -0.0
467,265 - +0.1
467,265 - -0.7
467,390 + HUW76_02315 0.20 -0.4
467,390 + HUW76_02315 0.20 +0.0
467,426 + HUW76_02315 0.27 +0.6

Or see this region's nucleotide sequence