Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02090

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02080 and HUW76_02085 are separated by 5 nucleotidesHUW76_02085 and HUW76_02090 are separated by 16 nucleotidesHUW76_02090 and HUW76_02095 are separated by 3 nucleotides HUW76_02080: HUW76_02080 - biopolymer transporter ExbD, at 412,404 to 412,847 _02080 HUW76_02085: HUW76_02085 - energy transducer TonB, at 412,853 to 413,683 _02085 HUW76_02090: HUW76_02090 - sigma-54-dependent Fis family transcriptional regulator, at 413,700 to 415,094 _02090 HUW76_02095: HUW76_02095 - DNA polymerase III subunit gamma/tau, at 415,098 to 416,546 _02095 Position (kb) 413 414 415 416Strain fitness (log2 ratio) -1 0 1 2 3at 412.779 kb on + strand, within HUW76_02080at 412.905 kb on + strandat 412.905 kb on + strandat 412.937 kb on + strand, within HUW76_02085at 412.937 kb on + strand, within HUW76_02085at 412.960 kb on + strand, within HUW76_02085at 412.960 kb on + strand, within HUW76_02085at 412.982 kb on + strand, within HUW76_02085at 413.003 kb on + strand, within HUW76_02085at 413.005 kb on + strand, within HUW76_02085at 413.005 kb on + strand, within HUW76_02085at 413.005 kb on + strand, within HUW76_02085at 413.005 kb on + strand, within HUW76_02085at 413.129 kb on + strand, within HUW76_02085at 413.212 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.336 kb on + strand, within HUW76_02085at 413.336 kb on + strand, within HUW76_02085at 413.356 kb on + strand, within HUW76_02085at 413.358 kb on + strand, within HUW76_02085at 413.358 kb on + strand, within HUW76_02085at 413.414 kb on + strand, within HUW76_02085at 413.414 kb on + strand, within HUW76_02085at 413.435 kb on + strand, within HUW76_02085at 413.435 kb on + strand, within HUW76_02085at 413.447 kb on + strand, within HUW76_02085at 413.485 kb on + strand, within HUW76_02085at 413.531 kb on + strand, within HUW76_02085at 413.594 kb on + strand, within HUW76_02085at 413.604 kb on + strandat 413.612 kb on + strandat 413.766 kb on + strandat 413.766 kb on + strandat 413.827 kb on + strandat 413.928 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.015 kb on + strand, within HUW76_02090at 414.015 kb on + strand, within HUW76_02090at 414.055 kb on + strand, within HUW76_02090at 414.109 kb on + strand, within HUW76_02090at 414.160 kb on + strand, within HUW76_02090at 414.190 kb on + strand, within HUW76_02090at 414.220 kb on + strand, within HUW76_02090at 414.220 kb on + strand, within HUW76_02090at 414.220 kb on + strand, within HUW76_02090at 414.230 kb on + strand, within HUW76_02090at 414.230 kb on + strand, within HUW76_02090at 414.240 kb on + strand, within HUW76_02090at 414.240 kb on + strand, within HUW76_02090at 414.347 kb on + strand, within HUW76_02090at 414.347 kb on + strand, within HUW76_02090at 414.512 kb on + strand, within HUW76_02090at 414.734 kb on + strand, within HUW76_02090at 414.791 kb on + strand, within HUW76_02090at 414.791 kb on + strand, within HUW76_02090at 414.791 kb on + strand, within HUW76_02090at 414.791 kb on + strand, within HUW76_02090at 414.869 kb on + strand, within HUW76_02090at 414.869 kb on + strand, within HUW76_02090

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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412,779 + HUW76_02080 0.84 -0.8
412,905 + +0.5
412,905 + +0.6
412,937 + HUW76_02085 0.10 -0.5
412,937 + HUW76_02085 0.10 +0.7
412,960 + HUW76_02085 0.13 +0.9
412,960 + HUW76_02085 0.13 +0.6
412,982 + HUW76_02085 0.16 +0.1
413,003 + HUW76_02085 0.18 +0.5
413,005 + HUW76_02085 0.18 +0.4
413,005 + HUW76_02085 0.18 +0.9
413,005 + HUW76_02085 0.18 -0.2
413,005 + HUW76_02085 0.18 +0.4
413,129 + HUW76_02085 0.33 +0.5
413,212 + HUW76_02085 0.43 -0.4
413,281 + HUW76_02085 0.52 -0.0
413,281 + HUW76_02085 0.52 +0.3
413,281 + HUW76_02085 0.52 +0.2
413,281 + HUW76_02085 0.52 +0.4
413,281 + HUW76_02085 0.52 -0.1
413,281 + HUW76_02085 0.52 -0.5
413,281 + HUW76_02085 0.52 +1.0
413,336 + HUW76_02085 0.58 +0.4
413,336 + HUW76_02085 0.58 +0.1
413,356 + HUW76_02085 0.61 +0.6
413,358 + HUW76_02085 0.61 +0.4
413,358 + HUW76_02085 0.61 +0.3
413,414 + HUW76_02085 0.68 -0.6
413,414 + HUW76_02085 0.68 +0.4
413,435 + HUW76_02085 0.70 +0.8
413,435 + HUW76_02085 0.70 +0.6
413,447 + HUW76_02085 0.71 +0.6
413,485 + HUW76_02085 0.76 +0.4
413,531 + HUW76_02085 0.82 -0.8
413,594 + HUW76_02085 0.89 -0.3
413,604 + +0.9
413,612 + -0.4
413,766 + +1.2
413,766 + +1.2
413,827 + +1.4
413,928 + HUW76_02090 0.16 +1.4
414,005 + HUW76_02090 0.22 +1.8
414,005 + HUW76_02090 0.22 +1.8
414,005 + HUW76_02090 0.22 +1.6
414,005 + HUW76_02090 0.22 +1.3
414,005 + HUW76_02090 0.22 +1.6
414,005 + HUW76_02090 0.22 +1.3
414,015 + HUW76_02090 0.23 +2.6
414,015 + HUW76_02090 0.23 +1.1
414,055 + HUW76_02090 0.25 +1.4
414,109 + HUW76_02090 0.29 +1.1
414,160 + HUW76_02090 0.33 +2.6
414,190 + HUW76_02090 0.35 +0.8
414,220 + HUW76_02090 0.37 +1.4
414,220 + HUW76_02090 0.37 +0.8
414,220 + HUW76_02090 0.37 -0.0
414,230 + HUW76_02090 0.38 +1.5
414,230 + HUW76_02090 0.38 +1.0
414,240 + HUW76_02090 0.39 +0.9
414,240 + HUW76_02090 0.39 +1.2
414,347 + HUW76_02090 0.46 -0.4
414,347 + HUW76_02090 0.46 +2.1
414,512 + HUW76_02090 0.58 +3.1
414,734 + HUW76_02090 0.74 +0.8
414,791 + HUW76_02090 0.78 +1.7
414,791 + HUW76_02090 0.78 +3.5
414,791 + HUW76_02090 0.78 +0.2
414,791 + HUW76_02090 0.78 -0.1
414,869 + HUW76_02090 0.84 +2.4
414,869 + HUW76_02090 0.84 +1.6

Or see this region's nucleotide sequence