Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01385

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01380 and HUW76_01385 are separated by 27 nucleotidesHUW76_01385 and HUW76_01390 overlap by 8 nucleotides HUW76_01380: HUW76_01380 - Gfo/Idh/MocA family oxidoreductase, at 270,263 to 271,339 _01380 HUW76_01385: HUW76_01385 - glycosyltransferase, at 271,367 to 272,461 _01385 HUW76_01390: HUW76_01390 - O-antigen ligase family protein, at 272,454 to 273,644 _01390 Position (kb) 271 272 273Strain fitness (log2 ratio) -1 0 1 2 3at 270.568 kb on + strand, within HUW76_01380at 270.568 kb on + strand, within HUW76_01380at 270.608 kb on - strand, within HUW76_01380at 270.642 kb on - strand, within HUW76_01380at 270.765 kb on + strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.866 kb on + strand, within HUW76_01380at 270.868 kb on + strand, within HUW76_01380at 270.868 kb on + strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.891 kb on + strand, within HUW76_01380at 270.930 kb on - strand, within HUW76_01380at 270.943 kb on - strand, within HUW76_01380at 270.979 kb on - strand, within HUW76_01380at 270.979 kb on - strand, within HUW76_01380at 270.979 kb on - strand, within HUW76_01380at 271.013 kb on + strand, within HUW76_01380at 271.013 kb on + strand, within HUW76_01380at 271.072 kb on + strand, within HUW76_01380at 271.072 kb on + strand, within HUW76_01380at 271.088 kb on + strand, within HUW76_01380at 271.088 kb on + strand, within HUW76_01380at 271.099 kb on - strand, within HUW76_01380at 271.141 kb on - strand, within HUW76_01380at 271.143 kb on - strand, within HUW76_01380at 271.143 kb on - strand, within HUW76_01380at 271.158 kb on + strand, within HUW76_01380at 271.168 kb on - strand, within HUW76_01380at 271.347 kb on + strandat 271.347 kb on + strandat 271.349 kb on + strandat 271.390 kb on + strandat 271.407 kb on + strandat 271.407 kb on + strandat 271.474 kb on + strandat 271.474 kb on + strandat 271.510 kb on + strand, within HUW76_01385at 271.510 kb on + strand, within HUW76_01385at 271.510 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.516 kb on + strand, within HUW76_01385at 271.516 kb on + strand, within HUW76_01385at 271.516 kb on + strand, within HUW76_01385at 271.643 kb on + strand, within HUW76_01385at 271.643 kb on + strand, within HUW76_01385at 271.688 kb on + strand, within HUW76_01385at 271.688 kb on + strand, within HUW76_01385at 271.725 kb on + strand, within HUW76_01385at 271.777 kb on + strand, within HUW76_01385at 271.839 kb on + strand, within HUW76_01385at 271.845 kb on + strand, within HUW76_01385at 271.900 kb on + strand, within HUW76_01385at 271.933 kb on + strand, within HUW76_01385at 272.048 kb on + strand, within HUW76_01385at 272.048 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385at 272.420 kb on + strandat 272.610 kb on - strand, within HUW76_01390at 272.872 kb on - strand, within HUW76_01390at 272.882 kb on - strand, within HUW76_01390at 273.057 kb on - strand, within HUW76_01390at 273.146 kb on - strand, within HUW76_01390at 273.195 kb on - strand, within HUW76_01390

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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270,568 + HUW76_01380 0.28 +1.1
270,568 + HUW76_01380 0.28 +1.1
270,608 - HUW76_01380 0.32 +1.2
270,642 - HUW76_01380 0.35 +1.6
270,765 + HUW76_01380 0.47 +0.8
270,784 - HUW76_01380 0.48 +3.0
270,784 - HUW76_01380 0.48 +1.0
270,784 - HUW76_01380 0.48 +2.6
270,784 - HUW76_01380 0.48 +0.5
270,866 + HUW76_01380 0.56 +1.0
270,868 + HUW76_01380 0.56 +0.5
270,868 + HUW76_01380 0.56 +0.8
270,876 - HUW76_01380 0.57 -0.3
270,876 - HUW76_01380 0.57 +0.3
270,876 - HUW76_01380 0.57 +1.1
270,876 - HUW76_01380 0.57 +1.1
270,891 + HUW76_01380 0.58 +0.8
270,930 - HUW76_01380 0.62 +1.1
270,943 - HUW76_01380 0.63 +0.9
270,979 - HUW76_01380 0.66 +0.9
270,979 - HUW76_01380 0.66 +0.1
270,979 - HUW76_01380 0.66 +0.9
271,013 + HUW76_01380 0.70 +0.9
271,013 + HUW76_01380 0.70 +0.6
271,072 + HUW76_01380 0.75 +1.1
271,072 + HUW76_01380 0.75 +0.9
271,088 + HUW76_01380 0.77 -0.3
271,088 + HUW76_01380 0.77 +0.9
271,099 - HUW76_01380 0.78 +1.9
271,141 - HUW76_01380 0.82 -0.1
271,143 - HUW76_01380 0.82 +1.1
271,143 - HUW76_01380 0.82 +2.0
271,158 + HUW76_01380 0.83 +1.2
271,168 - HUW76_01380 0.84 +1.3
271,347 + +0.1
271,347 + +0.1
271,349 + -0.3
271,390 + +0.7
271,407 + +0.6
271,407 + +0.2
271,474 + +0.7
271,474 + +1.0
271,510 + HUW76_01385 0.13 +0.3
271,510 + HUW76_01385 0.13 +0.5
271,510 + HUW76_01385 0.13 +0.6
271,511 + HUW76_01385 0.13 +1.2
271,511 + HUW76_01385 0.13 +1.2
271,511 + HUW76_01385 0.13 +0.7
271,511 + HUW76_01385 0.13 +0.8
271,511 + HUW76_01385 0.13 +2.5
271,516 + HUW76_01385 0.14 -0.4
271,516 + HUW76_01385 0.14 +0.7
271,516 + HUW76_01385 0.14 +1.5
271,643 + HUW76_01385 0.25 +0.8
271,643 + HUW76_01385 0.25 +1.1
271,688 + HUW76_01385 0.29 -1.2
271,688 + HUW76_01385 0.29 +0.3
271,725 + HUW76_01385 0.33 +0.2
271,777 + HUW76_01385 0.37 +0.8
271,839 + HUW76_01385 0.43 -0.3
271,845 + HUW76_01385 0.44 +0.6
271,900 + HUW76_01385 0.49 +1.3
271,933 + HUW76_01385 0.52 +0.3
272,048 + HUW76_01385 0.62 +1.1
272,048 + HUW76_01385 0.62 +2.4
272,198 + HUW76_01385 0.76 +0.8
272,198 + HUW76_01385 0.76 +0.8
272,198 + HUW76_01385 0.76 +1.1
272,198 + HUW76_01385 0.76 -0.4
272,420 + +0.4
272,610 - HUW76_01390 0.13 +1.5
272,872 - HUW76_01390 0.35 +2.5
272,882 - HUW76_01390 0.36 +2.5
273,057 - HUW76_01390 0.51 +2.9
273,146 - HUW76_01390 0.58 +1.5
273,195 - HUW76_01390 0.62 +1.8

Or see this region's nucleotide sequence