Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01320

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01310 and HUW76_01315 are separated by 9 nucleotidesHUW76_01315 and HUW76_01320 are separated by 11 nucleotidesHUW76_01320 and HUW76_01325 are separated by 16 nucleotides HUW76_01310: HUW76_01310 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 256,617 to 257,189 _01310 HUW76_01315: HUW76_01315 - dTDP-4-dehydrorhamnose reductase, at 257,199 to 258,095 _01315 HUW76_01320: HUW76_01320 - hypothetical protein, at 258,107 to 259,105 _01320 HUW76_01325: HUW76_01325 - polysaccharide biosynthesis protein, at 259,122 to 260,933 _01325 Position (kb) 258 259 260Strain fitness (log2 ratio) -1 0 1 2 3 4at 257.189 kb on + strandat 257.189 kb on + strandat 257.189 kb on + strandat 257.189 kb on + strandat 257.189 kb on + strandat 257.197 kb on + strandat 257.197 kb on + strandat 257.197 kb on - strandat 257.273 kb on + strandat 257.531 kb on + strand, within HUW76_01315at 257.539 kb on + strand, within HUW76_01315at 257.557 kb on + strand, within HUW76_01315at 257.557 kb on + strand, within HUW76_01315at 257.562 kb on + strand, within HUW76_01315at 257.566 kb on + strand, within HUW76_01315at 257.824 kb on + strand, within HUW76_01315at 258.057 kb on + strandat 258.057 kb on + strandat 258.090 kb on + strandat 258.097 kb on + strandat 258.221 kb on + strand, within HUW76_01320at 258.229 kb on - strand, within HUW76_01320at 258.247 kb on + strand, within HUW76_01320at 258.247 kb on + strand, within HUW76_01320at 258.247 kb on + strand, within HUW76_01320at 258.277 kb on + strand, within HUW76_01320at 258.285 kb on - strand, within HUW76_01320at 258.302 kb on + strand, within HUW76_01320at 258.302 kb on + strand, within HUW76_01320at 258.398 kb on + strand, within HUW76_01320at 258.398 kb on + strand, within HUW76_01320at 258.436 kb on - strand, within HUW76_01320at 258.454 kb on + strand, within HUW76_01320at 258.454 kb on + strand, within HUW76_01320at 258.454 kb on + strand, within HUW76_01320at 258.472 kb on + strand, within HUW76_01320at 258.472 kb on + strand, within HUW76_01320at 258.513 kb on + strand, within HUW76_01320at 258.527 kb on - strand, within HUW76_01320at 258.564 kb on + strand, within HUW76_01320at 258.577 kb on + strand, within HUW76_01320at 258.577 kb on + strand, within HUW76_01320at 258.579 kb on + strand, within HUW76_01320at 258.579 kb on + strand, within HUW76_01320at 258.623 kb on + strand, within HUW76_01320at 258.662 kb on + strand, within HUW76_01320at 258.665 kb on - strand, within HUW76_01320at 258.673 kb on - strand, within HUW76_01320at 258.790 kb on + strand, within HUW76_01320at 258.790 kb on + strand, within HUW76_01320at 258.793 kb on - strand, within HUW76_01320at 258.794 kb on - strand, within HUW76_01320at 258.794 kb on - strand, within HUW76_01320at 258.795 kb on + strand, within HUW76_01320at 258.795 kb on + strand, within HUW76_01320at 258.795 kb on + strand, within HUW76_01320at 258.795 kb on + strand, within HUW76_01320at 258.801 kb on + strand, within HUW76_01320at 258.809 kb on - strand, within HUW76_01320at 258.809 kb on - strand, within HUW76_01320at 258.819 kb on + strand, within HUW76_01320at 258.847 kb on - strand, within HUW76_01320at 258.847 kb on - strand, within HUW76_01320at 258.881 kb on + strand, within HUW76_01320at 258.931 kb on + strand, within HUW76_01320at 259.121 kb on + strandat 259.121 kb on + strandat 259.129 kb on + strandat 259.129 kb on + strandat 259.137 kb on - strandat 259.137 kb on - strandat 259.346 kb on - strand, within HUW76_01325at 259.355 kb on - strand, within HUW76_01325at 259.355 kb on - strand, within HUW76_01325at 259.470 kb on + strand, within HUW76_01325at 259.535 kb on + strand, within HUW76_01325at 259.535 kb on + strand, within HUW76_01325at 259.535 kb on + strand, within HUW76_01325at 259.535 kb on + strand, within HUW76_01325at 259.543 kb on + strand, within HUW76_01325at 259.543 kb on - strand, within HUW76_01325at 259.668 kb on + strand, within HUW76_01325at 259.676 kb on - strand, within HUW76_01325at 259.791 kb on + strand, within HUW76_01325at 259.799 kb on - strand, within HUW76_01325at 259.799 kb on - strand, within HUW76_01325at 259.804 kb on - strand, within HUW76_01325at 259.806 kb on + strand, within HUW76_01325at 259.951 kb on - strand, within HUW76_01325at 259.951 kb on - strand, within HUW76_01325at 259.951 kb on - strand, within HUW76_01325at 259.978 kb on + strand, within HUW76_01325at 259.978 kb on + strand, within HUW76_01325at 259.978 kb on + strand, within HUW76_01325at 259.978 kb on + strand, within HUW76_01325at 260.000 kb on - strand, within HUW76_01325at 260.010 kb on + strand, within HUW76_01325at 260.010 kb on + strand, within HUW76_01325at 260.012 kb on + strand, within HUW76_01325at 260.012 kb on + strand, within HUW76_01325at 260.020 kb on - strand, within HUW76_01325at 260.020 kb on - strand, within HUW76_01325at 260.020 kb on - strand, within HUW76_01325at 260.064 kb on - strand, within HUW76_01325

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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257,189 + +2.0
257,189 + +2.1
257,189 + +1.4
257,189 + +1.6
257,189 + -0.9
257,197 + +2.4
257,197 + +2.3
257,197 - +2.5
257,273 + +0.3
257,531 + HUW76_01315 0.37 +3.9
257,539 + HUW76_01315 0.38 +2.9
257,557 + HUW76_01315 0.40 +4.2
257,557 + HUW76_01315 0.40 +2.5
257,562 + HUW76_01315 0.40 +3.2
257,566 + HUW76_01315 0.41 +2.3
257,824 + HUW76_01315 0.70 +4.3
258,057 + +1.4
258,057 + +3.3
258,090 + +0.5
258,097 + +0.6
258,221 + HUW76_01320 0.11 +4.2
258,229 - HUW76_01320 0.12 +0.0
258,247 + HUW76_01320 0.14 +2.1
258,247 + HUW76_01320 0.14 +2.2
258,247 + HUW76_01320 0.14 +1.2
258,277 + HUW76_01320 0.17 +2.9
258,285 - HUW76_01320 0.18 -0.3
258,302 + HUW76_01320 0.20 +3.2
258,302 + HUW76_01320 0.20 +2.1
258,398 + HUW76_01320 0.29 +4.0
258,398 + HUW76_01320 0.29 +2.4
258,436 - HUW76_01320 0.33 +0.7
258,454 + HUW76_01320 0.35 +1.4
258,454 + HUW76_01320 0.35 +2.5
258,454 + HUW76_01320 0.35 +2.8
258,472 + HUW76_01320 0.37 +0.7
258,472 + HUW76_01320 0.37 +1.9
258,513 + HUW76_01320 0.41 +3.4
258,527 - HUW76_01320 0.42 +0.0
258,564 + HUW76_01320 0.46 +3.5
258,577 + HUW76_01320 0.47 +2.2
258,577 + HUW76_01320 0.47 +2.7
258,579 + HUW76_01320 0.47 +1.0
258,579 + HUW76_01320 0.47 -0.3
258,623 + HUW76_01320 0.52 +2.7
258,662 + HUW76_01320 0.56 +1.7
258,665 - HUW76_01320 0.56 -0.2
258,673 - HUW76_01320 0.57 +0.1
258,790 + HUW76_01320 0.68 -0.1
258,790 + HUW76_01320 0.68 +2.7
258,793 - HUW76_01320 0.69 +0.2
258,794 - HUW76_01320 0.69 -0.4
258,794 - HUW76_01320 0.69 -0.3
258,795 + HUW76_01320 0.69 +2.4
258,795 + HUW76_01320 0.69 +2.9
258,795 + HUW76_01320 0.69 +2.7
258,795 + HUW76_01320 0.69 +1.6
258,801 + HUW76_01320 0.69 +2.6
258,809 - HUW76_01320 0.70 +0.4
258,809 - HUW76_01320 0.70 +0.1
258,819 + HUW76_01320 0.71 +3.9
258,847 - HUW76_01320 0.74 -0.0
258,847 - HUW76_01320 0.74 -0.2
258,881 + HUW76_01320 0.77 +4.7
258,931 + HUW76_01320 0.82 +2.6
259,121 + +1.0
259,121 + +2.2
259,129 + +1.6
259,129 + +2.4
259,137 - +1.2
259,137 - +0.7
259,346 - HUW76_01325 0.12 +0.4
259,355 - HUW76_01325 0.13 -0.3
259,355 - HUW76_01325 0.13 +0.5
259,470 + HUW76_01325 0.19 +2.2
259,535 + HUW76_01325 0.23 +1.1
259,535 + HUW76_01325 0.23 +0.9
259,535 + HUW76_01325 0.23 +2.3
259,535 + HUW76_01325 0.23 +1.3
259,543 + HUW76_01325 0.23 +2.0
259,543 - HUW76_01325 0.23 +0.0
259,668 + HUW76_01325 0.30 +0.9
259,676 - HUW76_01325 0.31 -0.3
259,791 + HUW76_01325 0.37 +1.0
259,799 - HUW76_01325 0.37 +0.4
259,799 - HUW76_01325 0.37 +1.0
259,804 - HUW76_01325 0.38 -0.1
259,806 + HUW76_01325 0.38 +2.3
259,951 - HUW76_01325 0.46 +0.9
259,951 - HUW76_01325 0.46 +1.0
259,951 - HUW76_01325 0.46 +0.9
259,978 + HUW76_01325 0.47 +1.4
259,978 + HUW76_01325 0.47 +0.9
259,978 + HUW76_01325 0.47 +1.4
259,978 + HUW76_01325 0.47 +1.9
260,000 - HUW76_01325 0.48 +1.4
260,010 + HUW76_01325 0.49 +1.0
260,010 + HUW76_01325 0.49 +1.3
260,012 + HUW76_01325 0.49 +1.8
260,012 + HUW76_01325 0.49 +2.1
260,020 - HUW76_01325 0.50 +2.4
260,020 - HUW76_01325 0.50 -0.9
260,020 - HUW76_01325 0.50 +0.1
260,064 - HUW76_01325 0.52 +0.9

Or see this region's nucleotide sequence