Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04920

Experiment: Time0_glycerolstock

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHUW76_04915 and HUW76_04920 are separated by 255 nucleotidesHUW76_04920 and HUW76_04925 overlap by 4 nucleotidesHUW76_04925 and HUW76_04930 are separated by 58 nucleotides HUW76_04915: HUW76_04915 - GNAT family N-acetyltransferase, at 989,262 to 990,437 _04915 HUW76_04920: HUW76_04920 - AzlD domain-containing protein, at 990,693 to 991,016 _04920 HUW76_04925: HUW76_04925 - AzlC family ABC transporter permease, at 991,013 to 991,714 _04925 HUW76_04930: HUW76_04930 - DMT family transporter, at 991,773 to 992,681 _04930 Position (kb) 990 991 992Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 989.700 kb on - strand, within HUW76_04915at 989.754 kb on - strand, within HUW76_04915at 989.754 kb on - strand, within HUW76_04915at 989.795 kb on + strand, within HUW76_04915at 989.795 kb on + strand, within HUW76_04915at 989.795 kb on + strand, within HUW76_04915at 989.803 kb on - strand, within HUW76_04915at 989.848 kb on + strand, within HUW76_04915at 990.099 kb on + strand, within HUW76_04915at 990.099 kb on + strand, within HUW76_04915at 990.176 kb on + strand, within HUW76_04915at 990.176 kb on + strand, within HUW76_04915at 990.236 kb on - strand, within HUW76_04915at 990.236 kb on - strand, within HUW76_04915at 990.236 kb on - strand, within HUW76_04915at 990.236 kb on - strand, within HUW76_04915at 990.356 kb on + strandat 990.356 kb on + strandat 990.364 kb on - strandat 990.368 kb on + strandat 990.368 kb on + strandat 990.376 kb on - strandat 990.376 kb on - strandat 990.719 kb on + strandat 990.792 kb on + strand, within HUW76_04920at 990.792 kb on + strand, within HUW76_04920at 990.810 kb on + strand, within HUW76_04920at 990.810 kb on + strand, within HUW76_04920at 990.811 kb on + strand, within HUW76_04920at 990.819 kb on - strand, within HUW76_04920at 990.819 kb on - strand, within HUW76_04920at 990.848 kb on - strand, within HUW76_04920at 990.937 kb on + strand, within HUW76_04920at 990.937 kb on + strand, within HUW76_04920at 990.942 kb on + strand, within HUW76_04920at 990.942 kb on + strand, within HUW76_04920at 990.942 kb on + strand, within HUW76_04920at 990.950 kb on - strand, within HUW76_04920at 990.950 kb on - strand, within HUW76_04920at 990.950 kb on - strand, within HUW76_04920at 990.950 kb on - strand, within HUW76_04920at 990.950 kb on - strand, within HUW76_04920at 990.950 kb on - strand, within HUW76_04920at 990.950 kb on - strand, within HUW76_04920at 990.962 kb on - strand, within HUW76_04920at 990.979 kb on + strand, within HUW76_04920at 990.986 kb on - strandat 990.986 kb on - strandat 991.078 kb on + strandat 991.086 kb on - strand, within HUW76_04925at 991.120 kb on + strand, within HUW76_04925at 991.121 kb on + strand, within HUW76_04925at 991.147 kb on - strand, within HUW76_04925at 991.147 kb on - strand, within HUW76_04925at 991.263 kb on + strand, within HUW76_04925at 991.263 kb on + strand, within HUW76_04925at 991.269 kb on - strand, within HUW76_04925at 991.269 kb on - strand, within HUW76_04925at 991.304 kb on - strand, within HUW76_04925at 991.322 kb on - strand, within HUW76_04925at 991.362 kb on - strand, within HUW76_04925at 991.362 kb on - strand, within HUW76_04925at 991.362 kb on - strand, within HUW76_04925at 991.362 kb on - strand, within HUW76_04925at 991.362 kb on - strand, within HUW76_04925at 991.363 kb on - strand, within HUW76_04925at 991.374 kb on + strand, within HUW76_04925at 991.387 kb on + strand, within HUW76_04925at 991.387 kb on + strand, within HUW76_04925at 991.395 kb on - strand, within HUW76_04925at 991.463 kb on - strand, within HUW76_04925at 991.463 kb on - strand, within HUW76_04925at 991.468 kb on - strand, within HUW76_04925at 991.475 kb on - strand, within HUW76_04925at 991.475 kb on - strand, within HUW76_04925at 991.517 kb on + strand, within HUW76_04925at 991.525 kb on + strand, within HUW76_04925at 991.533 kb on - strand, within HUW76_04925at 991.569 kb on - strand, within HUW76_04925at 991.569 kb on - strand, within HUW76_04925at 991.569 kb on - strand, within HUW76_04925at 991.569 kb on - strand, within HUW76_04925at 991.598 kb on + strand, within HUW76_04925at 991.598 kb on + strand, within HUW76_04925at 991.712 kb on + strandat 991.712 kb on + strandat 991.728 kb on - strandat 991.728 kb on - strandat 991.733 kb on - strandat 991.749 kb on - strandat 991.749 kb on - strandat 991.786 kb on - strandat 991.812 kb on - strandat 991.812 kb on - strandat 991.812 kb on - strandat 991.812 kb on - strandat 991.981 kb on - strand, within HUW76_04930at 991.990 kb on + strand, within HUW76_04930at 991.990 kb on + strand, within HUW76_04930at 991.990 kb on + strand, within HUW76_04930at 991.990 kb on + strand, within HUW76_04930at 991.990 kb on + strand, within HUW76_04930at 991.990 kb on + strand, within HUW76_04930at 991.995 kb on + strand, within HUW76_04930at 991.995 kb on + strand, within HUW76_04930at 991.998 kb on - strand, within HUW76_04930at 991.998 kb on - strand, within HUW76_04930at 992.015 kb on + strand, within HUW76_04930at 992.015 kb on + strand, within HUW76_04930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
remove
989,700 - HUW76_04915 0.37 +0.1
989,754 - HUW76_04915 0.42 +0.1
989,754 - HUW76_04915 0.42 +0.1
989,795 + HUW76_04915 0.45 +0.6
989,795 + HUW76_04915 0.45 +5.5
989,795 + HUW76_04915 0.45 +1.0
989,803 - HUW76_04915 0.46 -0.4
989,848 + HUW76_04915 0.50 +0.9
990,099 + HUW76_04915 0.71 +1.3
990,099 + HUW76_04915 0.71 +0.9
990,176 + HUW76_04915 0.78 +1.0
990,176 + HUW76_04915 0.78 +0.1
990,236 - HUW76_04915 0.83 -0.3
990,236 - HUW76_04915 0.83 +1.7
990,236 - HUW76_04915 0.83 +0.0
990,236 - HUW76_04915 0.83 -0.3
990,356 + -0.4
990,356 + -0.0
990,364 - -1.9
990,368 + -0.4
990,368 + -0.2
990,376 - -0.9
990,376 - -0.9
990,719 + +2.3
990,792 + HUW76_04920 0.31 -1.1
990,792 + HUW76_04920 0.31 +0.7
990,810 + HUW76_04920 0.36 +0.4
990,810 + HUW76_04920 0.36 +0.1
990,811 + HUW76_04920 0.36 -0.2
990,819 - HUW76_04920 0.39 -1.1
990,819 - HUW76_04920 0.39 -0.3
990,848 - HUW76_04920 0.48 +0.5
990,937 + HUW76_04920 0.75 -0.8
990,937 + HUW76_04920 0.75 +0.0
990,942 + HUW76_04920 0.77 -1.3
990,942 + HUW76_04920 0.77 +0.2
990,942 + HUW76_04920 0.77 +0.4
990,950 - HUW76_04920 0.79 -0.2
990,950 - HUW76_04920 0.79 -1.4
990,950 - HUW76_04920 0.79 -1.3
990,950 - HUW76_04920 0.79 -0.2
990,950 - HUW76_04920 0.79 -1.2
990,950 - HUW76_04920 0.79 -0.1
990,950 - HUW76_04920 0.79 -0.5
990,962 - HUW76_04920 0.83 -0.7
990,979 + HUW76_04920 0.88 +1.1
990,986 - -0.6
990,986 - -0.5
991,078 + -0.5
991,086 - HUW76_04925 0.10 -0.7
991,120 + HUW76_04925 0.15 -0.1
991,121 + HUW76_04925 0.15 +0.3
991,147 - HUW76_04925 0.19 -2.9
991,147 - HUW76_04925 0.19 +0.5
991,263 + HUW76_04925 0.36 -0.4
991,263 + HUW76_04925 0.36 +0.1
991,269 - HUW76_04925 0.36 +0.2
991,269 - HUW76_04925 0.36 +0.5
991,304 - HUW76_04925 0.41 -0.6
991,322 - HUW76_04925 0.44 -0.2
991,362 - HUW76_04925 0.50 +0.6
991,362 - HUW76_04925 0.50 -0.7
991,362 - HUW76_04925 0.50 +1.6
991,362 - HUW76_04925 0.50 +1.1
991,362 - HUW76_04925 0.50 -0.0
991,363 - HUW76_04925 0.50 +2.6
991,374 + HUW76_04925 0.51 +3.3
991,387 + HUW76_04925 0.53 +0.9
991,387 + HUW76_04925 0.53 +0.9
991,395 - HUW76_04925 0.54 +0.3
991,463 - HUW76_04925 0.64 +0.1
991,463 - HUW76_04925 0.64 -2.0
991,468 - HUW76_04925 0.65 -1.7
991,475 - HUW76_04925 0.66 -0.0
991,475 - HUW76_04925 0.66 +0.1
991,517 + HUW76_04925 0.72 +0.1
991,525 + HUW76_04925 0.73 +1.7
991,533 - HUW76_04925 0.74 -0.9
991,569 - HUW76_04925 0.79 +1.9
991,569 - HUW76_04925 0.79 +0.7
991,569 - HUW76_04925 0.79 -0.3
991,569 - HUW76_04925 0.79 -0.3
991,598 + HUW76_04925 0.83 +2.5
991,598 + HUW76_04925 0.83 -0.3
991,712 + +1.4
991,712 + +0.7
991,728 - -0.4
991,728 - +1.2
991,733 - +0.3
991,749 - -1.9
991,749 - +0.4
991,786 - +0.3
991,812 - -0.5
991,812 - +0.6
991,812 - +0.5
991,812 - -0.7
991,981 - HUW76_04930 0.23 +1.1
991,990 + HUW76_04930 0.24 +0.1
991,990 + HUW76_04930 0.24 +1.0
991,990 + HUW76_04930 0.24 +0.8
991,990 + HUW76_04930 0.24 +0.8
991,990 + HUW76_04930 0.24 +2.3
991,990 + HUW76_04930 0.24 +0.3
991,995 + HUW76_04930 0.24 +1.2
991,995 + HUW76_04930 0.24 +0.7
991,998 - HUW76_04930 0.25 -0.9
991,998 - HUW76_04930 0.25 +2.7
992,015 + HUW76_04930 0.27 -1.7
992,015 + HUW76_04930 0.27 +0.4

Or see this region's nucleotide sequence