Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04425

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04415 and HUW76_04420 overlap by 14 nucleotidesHUW76_04420 and HUW76_04425 overlap by 4 nucleotidesHUW76_04425 and HUW76_04430 are separated by 198 nucleotides HUW76_04415: HUW76_04415 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 891,860 to 893,080 _04415 HUW76_04420: HUW76_04420 - chromate transporter, at 893,067 to 893,627 _04420 HUW76_04425: HUW76_04425 - chromate transporter, at 893,624 to 894,154 _04425 HUW76_04430: HUW76_04430 - NADH:flavin oxidoreductase, at 894,353 to 895,300 _04430 Position (kb) 893 894 895Strain fitness (log2 ratio) -2 -1 0 1 2 3at 893.135 kb on + strand, within HUW76_04420at 893.148 kb on - strand, within HUW76_04420at 893.148 kb on - strand, within HUW76_04420at 893.194 kb on + strand, within HUW76_04420at 893.213 kb on + strand, within HUW76_04420at 893.220 kb on + strand, within HUW76_04420at 893.220 kb on + strand, within HUW76_04420at 893.239 kb on - strand, within HUW76_04420at 893.244 kb on - strand, within HUW76_04420at 893.272 kb on - strand, within HUW76_04420at 893.274 kb on + strand, within HUW76_04420at 893.276 kb on + strand, within HUW76_04420at 893.276 kb on + strand, within HUW76_04420at 893.284 kb on - strand, within HUW76_04420at 893.358 kb on + strand, within HUW76_04420at 893.358 kb on + strand, within HUW76_04420at 893.421 kb on - strand, within HUW76_04420at 893.421 kb on - strand, within HUW76_04420at 893.422 kb on - strand, within HUW76_04420at 893.422 kb on - strand, within HUW76_04420at 893.427 kb on - strand, within HUW76_04420at 893.427 kb on - strand, within HUW76_04420at 893.466 kb on - strand, within HUW76_04420at 893.466 kb on - strand, within HUW76_04420at 893.576 kb on - strandat 893.576 kb on - strandat 893.658 kb on + strandat 893.658 kb on + strandat 893.688 kb on + strand, within HUW76_04425at 893.688 kb on + strand, within HUW76_04425at 893.696 kb on - strand, within HUW76_04425at 893.708 kb on - strand, within HUW76_04425at 893.708 kb on - strand, within HUW76_04425at 893.718 kb on + strand, within HUW76_04425at 893.718 kb on + strand, within HUW76_04425at 893.824 kb on + strand, within HUW76_04425at 893.824 kb on + strand, within HUW76_04425at 893.824 kb on + strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.842 kb on - strand, within HUW76_04425at 893.847 kb on + strand, within HUW76_04425at 893.871 kb on + strand, within HUW76_04425at 893.914 kb on - strand, within HUW76_04425at 893.914 kb on - strand, within HUW76_04425at 893.914 kb on - strand, within HUW76_04425at 893.961 kb on + strand, within HUW76_04425at 893.968 kb on - strand, within HUW76_04425at 893.981 kb on - strand, within HUW76_04425at 893.981 kb on - strand, within HUW76_04425at 894.062 kb on + strand, within HUW76_04425at 894.096 kb on + strand, within HUW76_04425at 894.096 kb on + strand, within HUW76_04425at 894.130 kb on - strandat 894.134 kb on + strandat 894.134 kb on + strandat 894.134 kb on + strandat 894.134 kb on + strandat 894.134 kb on + strandat 894.134 kb on + strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.248 kb on + strandat 894.423 kb on + strandat 894.452 kb on + strand, within HUW76_04430at 894.457 kb on + strand, within HUW76_04430at 894.462 kb on + strand, within HUW76_04430at 894.462 kb on + strand, within HUW76_04430at 894.608 kb on - strand, within HUW76_04430at 894.610 kb on + strand, within HUW76_04430at 894.618 kb on - strand, within HUW76_04430at 894.618 kb on - strand, within HUW76_04430at 894.618 kb on - strand, within HUW76_04430at 894.637 kb on + strand, within HUW76_04430at 894.645 kb on - strand, within HUW76_04430at 894.751 kb on - strand, within HUW76_04430at 894.751 kb on - strand, within HUW76_04430at 894.751 kb on - strand, within HUW76_04430at 894.950 kb on - strand, within HUW76_04430at 894.959 kb on - strand, within HUW76_04430at 894.996 kb on + strand, within HUW76_04430at 895.019 kb on - strand, within HUW76_04430at 895.031 kb on + strand, within HUW76_04430at 895.039 kb on - strand, within HUW76_04430at 895.039 kb on - strand, within HUW76_04430at 895.039 kb on - strand, within HUW76_04430at 895.098 kb on + strand, within HUW76_04430

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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893,135 + HUW76_04420 0.12 -0.4
893,148 - HUW76_04420 0.14 +0.7
893,148 - HUW76_04420 0.14 +0.9
893,194 + HUW76_04420 0.23 -0.7
893,213 + HUW76_04420 0.26 -0.5
893,220 + HUW76_04420 0.27 +0.1
893,220 + HUW76_04420 0.27 +0.1
893,239 - HUW76_04420 0.31 -0.1
893,244 - HUW76_04420 0.32 +1.4
893,272 - HUW76_04420 0.37 -0.7
893,274 + HUW76_04420 0.37 -0.8
893,276 + HUW76_04420 0.37 +1.6
893,276 + HUW76_04420 0.37 +0.8
893,284 - HUW76_04420 0.39 -0.3
893,358 + HUW76_04420 0.52 -0.2
893,358 + HUW76_04420 0.52 -1.0
893,421 - HUW76_04420 0.63 -0.1
893,421 - HUW76_04420 0.63 +0.3
893,422 - HUW76_04420 0.63 +1.4
893,422 - HUW76_04420 0.63 +1.4
893,427 - HUW76_04420 0.64 -0.1
893,427 - HUW76_04420 0.64 +1.4
893,466 - HUW76_04420 0.71 -0.2
893,466 - HUW76_04420 0.71 +0.9
893,576 - -0.3
893,576 - +0.5
893,658 + -0.2
893,658 + -0.1
893,688 + HUW76_04425 0.12 -0.3
893,688 + HUW76_04425 0.12 -0.5
893,696 - HUW76_04425 0.14 -0.0
893,708 - HUW76_04425 0.16 -2.0
893,708 - HUW76_04425 0.16 -0.2
893,718 + HUW76_04425 0.18 -0.8
893,718 + HUW76_04425 0.18 -0.2
893,824 + HUW76_04425 0.38 -0.5
893,824 + HUW76_04425 0.38 -1.3
893,824 + HUW76_04425 0.38 +0.2
893,832 - HUW76_04425 0.39 +0.3
893,832 - HUW76_04425 0.39 +0.1
893,832 - HUW76_04425 0.39 -0.4
893,832 - HUW76_04425 0.39 +0.1
893,832 - HUW76_04425 0.39 +2.6
893,842 - HUW76_04425 0.41 +1.4
893,847 + HUW76_04425 0.42 -0.3
893,871 + HUW76_04425 0.47 -1.5
893,914 - HUW76_04425 0.55 -1.9
893,914 - HUW76_04425 0.55 -1.1
893,914 - HUW76_04425 0.55 -1.6
893,961 + HUW76_04425 0.63 -1.1
893,968 - HUW76_04425 0.65 +1.2
893,981 - HUW76_04425 0.67 -0.2
893,981 - HUW76_04425 0.67 -0.2
894,062 + HUW76_04425 0.82 -1.1
894,096 + HUW76_04425 0.89 -1.9
894,096 + HUW76_04425 0.89 -0.5
894,130 - +0.6
894,134 + -1.1
894,134 + +0.2
894,134 + -0.3
894,134 + -1.1
894,134 + -0.6
894,134 + -0.1
894,142 - +0.5
894,142 - +0.6
894,142 - +2.4
894,142 - +1.2
894,142 - +0.6
894,142 - +0.7
894,142 - +0.4
894,248 + -0.0
894,423 + -0.3
894,452 + HUW76_04430 0.10 -1.0
894,457 + HUW76_04430 0.11 -0.5
894,462 + HUW76_04430 0.11 +0.1
894,462 + HUW76_04430 0.11 -0.9
894,608 - HUW76_04430 0.27 -0.0
894,610 + HUW76_04430 0.27 -1.8
894,618 - HUW76_04430 0.28 +0.6
894,618 - HUW76_04430 0.28 -0.7
894,618 - HUW76_04430 0.28 -0.2
894,637 + HUW76_04430 0.30 +0.6
894,645 - HUW76_04430 0.31 +0.8
894,751 - HUW76_04430 0.42 -0.4
894,751 - HUW76_04430 0.42 +0.7
894,751 - HUW76_04430 0.42 -0.2
894,950 - HUW76_04430 0.63 +1.2
894,959 - HUW76_04430 0.64 +0.9
894,996 + HUW76_04430 0.68 -0.7
895,019 - HUW76_04430 0.70 +1.2
895,031 + HUW76_04430 0.72 +0.2
895,039 - HUW76_04430 0.72 +3.7
895,039 - HUW76_04430 0.72 +0.9
895,039 - HUW76_04430 0.72 +0.7
895,098 + HUW76_04430 0.79 -0.1

Or see this region's nucleotide sequence