Experiment: Time0_glycerolstock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_04035 and HUW76_04040 are separated by 5 nucleotides HUW76_04040 and HUW76_04045 are separated by 14 nucleotides HUW76_04045 and HUW76_04050 are separated by 14 nucleotides HUW76_04050 and HUW76_04055 are separated by 1 nucleotides
HUW76_04035: HUW76_04035 - polysaccharide deacetylase family protein, at 812,083 to 812,835
_04035
HUW76_04040: HUW76_04040 - glycosyltransferase, at 812,841 to 813,698
_04040
HUW76_04045: HUW76_04045 - polysaccharide deacetylase family protein, at 813,713 to 814,795
_04045
HUW76_04050: HUW76_04050 - glycosyltransferase, at 814,810 to 815,541
_04050
HUW76_04055: HUW76_04055 - lipopolysaccharide biosynthesis protein, at 815,543 to 816,265
_04055
Position (kb) 813
814
815 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 812.806 kb on - strand at 812.832 kb on + strand at 812.832 kb on + strand at 813.945 kb on + strand, within HUW76_04045 at 813.945 kb on + strand, within HUW76_04045 at 813.947 kb on + strand, within HUW76_04045 at 813.955 kb on + strand, within HUW76_04045 at 813.955 kb on + strand, within HUW76_04045 at 813.955 kb on + strand, within HUW76_04045 at 814.018 kb on - strand, within HUW76_04045 at 814.122 kb on + strand, within HUW76_04045 at 814.145 kb on + strand, within HUW76_04045 at 814.299 kb on + strand, within HUW76_04045 at 814.299 kb on + strand, within HUW76_04045 at 814.314 kb on + strand, within HUW76_04045 at 814.322 kb on + strand, within HUW76_04045 at 814.322 kb on + strand, within HUW76_04045 at 814.327 kb on + strand, within HUW76_04045 at 814.327 kb on + strand, within HUW76_04045 at 814.419 kb on + strand, within HUW76_04045 at 814.438 kb on + strand, within HUW76_04045 at 814.443 kb on + strand, within HUW76_04045 at 814.509 kb on + strand, within HUW76_04045 at 814.529 kb on + strand, within HUW76_04045 at 814.534 kb on + strand, within HUW76_04045 at 814.534 kb on + strand, within HUW76_04045 at 814.548 kb on + strand, within HUW76_04045 at 814.548 kb on + strand, within HUW76_04045 at 814.548 kb on + strand, within HUW76_04045 at 814.584 kb on + strand, within HUW76_04045 at 814.584 kb on + strand, within HUW76_04045 at 814.653 kb on + strand, within HUW76_04045 at 814.653 kb on + strand, within HUW76_04045 at 814.795 kb on + strand at 814.795 kb on + strand at 814.802 kb on + strand at 814.802 kb on + strand at 814.848 kb on + strand at 814.864 kb on + strand at 814.864 kb on + strand at 814.918 kb on + strand, within HUW76_04050 at 815.024 kb on + strand, within HUW76_04050 at 815.024 kb on + strand, within HUW76_04050 at 815.024 kb on + strand, within HUW76_04050 at 815.024 kb on + strand, within HUW76_04050 at 815.032 kb on + strand, within HUW76_04050 at 815.032 kb on + strand, within HUW76_04050 at 815.052 kb on + strand, within HUW76_04050 at 815.068 kb on + strand, within HUW76_04050 at 815.162 kb on + strand, within HUW76_04050 at 815.162 kb on + strand, within HUW76_04050 at 815.220 kb on + strand, within HUW76_04050 at 815.220 kb on + strand, within HUW76_04050 at 815.364 kb on + strand, within HUW76_04050 at 815.387 kb on + strand, within HUW76_04050 at 815.392 kb on + strand, within HUW76_04050 at 815.452 kb on + strand, within HUW76_04050 at 815.452 kb on + strand, within HUW76_04050 at 815.452 kb on + strand, within HUW76_04050
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_glycerolstock remove 812,806 - +2.4 812,832 + -1.4 812,832 + -1.4 813,945 + HUW76_04045 0.21 -1.2 813,945 + HUW76_04045 0.21 -0.9 813,947 + HUW76_04045 0.22 -0.5 813,955 + HUW76_04045 0.22 -1.2 813,955 + HUW76_04045 0.22 -0.3 813,955 + HUW76_04045 0.22 +0.7 814,018 - HUW76_04045 0.28 +2.8 814,122 + HUW76_04045 0.38 -0.8 814,145 + HUW76_04045 0.40 -0.1 814,299 + HUW76_04045 0.54 +0.8 814,299 + HUW76_04045 0.54 +0.4 814,314 + HUW76_04045 0.55 -0.6 814,322 + HUW76_04045 0.56 +0.1 814,322 + HUW76_04045 0.56 -0.7 814,327 + HUW76_04045 0.57 +0.2 814,327 + HUW76_04045 0.57 -1.5 814,419 + HUW76_04045 0.65 -0.7 814,438 + HUW76_04045 0.67 -1.3 814,443 + HUW76_04045 0.67 -0.7 814,509 + HUW76_04045 0.73 -0.3 814,529 + HUW76_04045 0.75 +0.3 814,534 + HUW76_04045 0.76 +0.2 814,534 + HUW76_04045 0.76 -0.8 814,548 + HUW76_04045 0.77 +0.0 814,548 + HUW76_04045 0.77 +0.5 814,548 + HUW76_04045 0.77 +0.0 814,584 + HUW76_04045 0.80 -0.2 814,584 + HUW76_04045 0.80 +0.9 814,653 + HUW76_04045 0.87 -0.4 814,653 + HUW76_04045 0.87 -1.9 814,795 + +0.1 814,795 + -0.6 814,802 + -2.3 814,802 + +0.1 814,848 + +3.4 814,864 + +2.4 814,864 + +0.0 814,918 + HUW76_04050 0.15 +3.0 815,024 + HUW76_04050 0.29 +0.4 815,024 + HUW76_04050 0.29 +2.4 815,024 + HUW76_04050 0.29 +2.0 815,024 + HUW76_04050 0.29 +2.4 815,032 + HUW76_04050 0.30 +1.4 815,032 + HUW76_04050 0.30 +0.9 815,052 + HUW76_04050 0.33 +3.2 815,068 + HUW76_04050 0.35 +3.6 815,162 + HUW76_04050 0.48 +1.7 815,162 + HUW76_04050 0.48 +0.6 815,220 + HUW76_04050 0.56 +0.1 815,220 + HUW76_04050 0.56 +2.7 815,364 + HUW76_04050 0.76 +1.6 815,387 + HUW76_04050 0.79 +1.5 815,392 + HUW76_04050 0.80 +2.2 815,452 + HUW76_04050 0.88 +0.6 815,452 + HUW76_04050 0.88 +2.4 815,452 + HUW76_04050 0.88 +2.1
Or see this region's nucleotide sequence