Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03315

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03300 and HUW76_03305 are separated by 1 nucleotidesHUW76_03305 and HUW76_03310 overlap by 1 nucleotidesHUW76_03310 and HUW76_03315 are separated by 9 nucleotidesHUW76_03315 and HUW76_03320 are separated by 9 nucleotidesHUW76_03320 and HUW76_03325 are separated by 401 nucleotides HUW76_03300: HUW76_03300 - hypothetical protein, at 674,512 to 674,808 _03300 HUW76_03305: HUW76_03305 - hypothetical protein, at 674,810 to 675,016 _03305 HUW76_03310: HUW76_03310 - hypothetical protein, at 675,016 to 675,600 _03310 HUW76_03315: HUW76_03315 - sigma-70 family RNA polymerase sigma factor, at 675,610 to 676,176 _03315 HUW76_03320: HUW76_03320 - hypothetical protein, at 676,186 to 676,374 _03320 HUW76_03325: HUW76_03325 - SHOCT domain-containing protein, at 676,776 to 677,546 _03325 Position (kb) 675 676 677Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 674.769 kb on - strand, within HUW76_03300at 674.769 kb on - strand, within HUW76_03300at 674.769 kb on - strand, within HUW76_03300at 674.794 kb on - strandat 674.794 kb on - strandat 674.918 kb on + strand, within HUW76_03305at 674.925 kb on + strand, within HUW76_03305at 674.926 kb on - strand, within HUW76_03305at 674.926 kb on - strand, within HUW76_03305at 675.067 kb on - strandat 675.067 kb on - strandat 675.106 kb on - strand, within HUW76_03310at 675.139 kb on - strand, within HUW76_03310at 675.139 kb on - strand, within HUW76_03310at 675.178 kb on + strand, within HUW76_03310at 675.178 kb on + strand, within HUW76_03310at 675.178 kb on + strand, within HUW76_03310at 675.178 kb on + strand, within HUW76_03310at 675.178 kb on + strand, within HUW76_03310at 675.178 kb on + strand, within HUW76_03310at 675.178 kb on + strand, within HUW76_03310at 675.178 kb on + strand, within HUW76_03310at 675.178 kb on + strand, within HUW76_03310at 675.178 kb on + strand, within HUW76_03310at 675.181 kb on - strand, within HUW76_03310at 675.183 kb on + strand, within HUW76_03310at 675.183 kb on + strand, within HUW76_03310at 675.183 kb on + strand, within HUW76_03310at 675.183 kb on + strand, within HUW76_03310at 675.183 kb on + strand, within HUW76_03310at 675.183 kb on + strand, within HUW76_03310at 675.183 kb on + strand, within HUW76_03310at 675.183 kb on + strand, within HUW76_03310at 675.183 kb on - strand, within HUW76_03310at 675.183 kb on - strand, within HUW76_03310at 675.186 kb on + strand, within HUW76_03310at 675.186 kb on + strand, within HUW76_03310at 675.186 kb on - strand, within HUW76_03310at 675.186 kb on - strand, within HUW76_03310at 675.186 kb on - strand, within HUW76_03310at 675.188 kb on + strand, within HUW76_03310at 675.191 kb on - strand, within HUW76_03310at 675.191 kb on - strand, within HUW76_03310at 675.191 kb on - strand, within HUW76_03310at 675.191 kb on - strand, within HUW76_03310at 675.191 kb on - strand, within HUW76_03310at 675.191 kb on - strand, within HUW76_03310at 675.191 kb on - strand, within HUW76_03310at 675.191 kb on - strand, within HUW76_03310at 675.230 kb on - strand, within HUW76_03310at 675.230 kb on - strand, within HUW76_03310at 675.262 kb on + strand, within HUW76_03310at 675.272 kb on + strand, within HUW76_03310at 675.272 kb on + strand, within HUW76_03310at 675.318 kb on + strand, within HUW76_03310at 675.318 kb on + strand, within HUW76_03310at 675.318 kb on + strand, within HUW76_03310at 675.450 kb on - strand, within HUW76_03310at 675.511 kb on - strand, within HUW76_03310at 675.511 kb on - strand, within HUW76_03310at 675.565 kb on + strandat 675.565 kb on + strandat 675.625 kb on + strandat 675.701 kb on + strand, within HUW76_03315at 675.701 kb on + strand, within HUW76_03315at 675.709 kb on - strand, within HUW76_03315at 675.711 kb on + strand, within HUW76_03315at 675.720 kb on + strand, within HUW76_03315at 675.726 kb on + strand, within HUW76_03315at 675.726 kb on + strand, within HUW76_03315at 675.726 kb on + strand, within HUW76_03315at 675.734 kb on - strand, within HUW76_03315at 675.736 kb on + strand, within HUW76_03315at 675.736 kb on + strand, within HUW76_03315at 675.739 kb on - strand, within HUW76_03315at 675.798 kb on + strand, within HUW76_03315at 675.810 kb on + strand, within HUW76_03315at 675.852 kb on + strand, within HUW76_03315at 675.872 kb on + strand, within HUW76_03315at 675.872 kb on + strand, within HUW76_03315at 675.872 kb on + strand, within HUW76_03315at 675.872 kb on + strand, within HUW76_03315at 675.872 kb on + strand, within HUW76_03315at 675.873 kb on + strand, within HUW76_03315at 675.873 kb on + strand, within HUW76_03315at 675.873 kb on + strand, within HUW76_03315at 675.873 kb on + strand, within HUW76_03315at 675.873 kb on + strand, within HUW76_03315at 675.873 kb on + strand, within HUW76_03315at 675.876 kb on - strand, within HUW76_03315at 675.881 kb on - strand, within HUW76_03315at 675.886 kb on + strand, within HUW76_03315at 675.886 kb on - strand, within HUW76_03315at 675.890 kb on + strand, within HUW76_03315at 675.892 kb on + strand, within HUW76_03315at 675.892 kb on + strand, within HUW76_03315at 675.898 kb on - strand, within HUW76_03315at 675.898 kb on - strand, within HUW76_03315at 675.900 kb on + strand, within HUW76_03315at 675.900 kb on - strand, within HUW76_03315at 675.900 kb on - strand, within HUW76_03315at 676.079 kb on - strand, within HUW76_03315at 676.081 kb on + strand, within HUW76_03315at 676.081 kb on + strand, within HUW76_03315at 676.082 kb on - strand, within HUW76_03315at 676.089 kb on - strand, within HUW76_03315at 676.093 kb on + strand, within HUW76_03315at 676.093 kb on + strand, within HUW76_03315at 676.132 kb on + strandat 676.138 kb on - strandat 676.145 kb on - strandat 676.183 kb on + strandat 676.184 kb on + strandat 676.184 kb on + strandat 676.192 kb on - strandat 676.192 kb on - strandat 676.552 kb on + strandat 676.560 kb on - strandat 676.596 kb on - strandat 676.596 kb on - strandat 676.596 kb on - strandat 676.596 kb on - strandat 676.596 kb on - strandat 676.651 kb on + strandat 676.852 kb on + strandat 676.994 kb on + strand, within HUW76_03325at 677.002 kb on - strand, within HUW76_03325at 677.002 kb on - strand, within HUW76_03325at 677.049 kb on - strand, within HUW76_03325at 677.049 kb on - strand, within HUW76_03325at 677.097 kb on + strand, within HUW76_03325at 677.097 kb on + strand, within HUW76_03325at 677.105 kb on - strand, within HUW76_03325at 677.145 kb on + strand, within HUW76_03325at 677.160 kb on + strand, within HUW76_03325at 677.160 kb on + strand, within HUW76_03325at 677.162 kb on + strand, within HUW76_03325at 677.162 kb on + strand, within HUW76_03325at 677.170 kb on - strand, within HUW76_03325at 677.170 kb on - strand, within HUW76_03325at 677.175 kb on - strand, within HUW76_03325

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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674,769 - HUW76_03300 0.87 -0.4
674,769 - HUW76_03300 0.87 +1.2
674,769 - HUW76_03300 0.87 -0.7
674,794 - -0.4
674,794 - +0.7
674,918 + HUW76_03305 0.52 +0.5
674,925 + HUW76_03305 0.56 +1.1
674,926 - HUW76_03305 0.56 +0.1
674,926 - HUW76_03305 0.56 -0.8
675,067 - -0.7
675,067 - -0.6
675,106 - HUW76_03310 0.15 -0.4
675,139 - HUW76_03310 0.21 +0.9
675,139 - HUW76_03310 0.21 +0.6
675,178 + HUW76_03310 0.28 -1.8
675,178 + HUW76_03310 0.28 +0.2
675,178 + HUW76_03310 0.28 -0.4
675,178 + HUW76_03310 0.28 -0.6
675,178 + HUW76_03310 0.28 -0.5
675,178 + HUW76_03310 0.28 -0.3
675,178 + HUW76_03310 0.28 -0.1
675,178 + HUW76_03310 0.28 +0.2
675,178 + HUW76_03310 0.28 -0.4
675,178 + HUW76_03310 0.28 -0.6
675,181 - HUW76_03310 0.28 +4.4
675,183 + HUW76_03310 0.29 -1.6
675,183 + HUW76_03310 0.29 -0.4
675,183 + HUW76_03310 0.29 -0.6
675,183 + HUW76_03310 0.29 -0.7
675,183 + HUW76_03310 0.29 -0.4
675,183 + HUW76_03310 0.29 +0.2
675,183 + HUW76_03310 0.29 -0.8
675,183 + HUW76_03310 0.29 -0.5
675,183 - HUW76_03310 0.29 +0.4
675,183 - HUW76_03310 0.29 -0.9
675,186 + HUW76_03310 0.29 -1.9
675,186 + HUW76_03310 0.29 +0.5
675,186 - HUW76_03310 0.29 -1.2
675,186 - HUW76_03310 0.29 +0.5
675,186 - HUW76_03310 0.29 +1.0
675,188 + HUW76_03310 0.29 +0.5
675,191 - HUW76_03310 0.30 +1.2
675,191 - HUW76_03310 0.30 -0.8
675,191 - HUW76_03310 0.30 +0.7
675,191 - HUW76_03310 0.30 -0.8
675,191 - HUW76_03310 0.30 +1.6
675,191 - HUW76_03310 0.30 +0.5
675,191 - HUW76_03310 0.30 +0.8
675,191 - HUW76_03310 0.30 +2.1
675,230 - HUW76_03310 0.37 +1.5
675,230 - HUW76_03310 0.37 -1.3
675,262 + HUW76_03310 0.42 -0.7
675,272 + HUW76_03310 0.44 -0.5
675,272 + HUW76_03310 0.44 -0.2
675,318 + HUW76_03310 0.52 -1.1
675,318 + HUW76_03310 0.52 -1.4
675,318 + HUW76_03310 0.52 -1.2
675,450 - HUW76_03310 0.74 -2.4
675,511 - HUW76_03310 0.85 +1.3
675,511 - HUW76_03310 0.85 +4.0
675,565 + -0.2
675,565 + -0.3
675,625 + -0.6
675,701 + HUW76_03315 0.16 -0.3
675,701 + HUW76_03315 0.16 -0.5
675,709 - HUW76_03315 0.17 +1.6
675,711 + HUW76_03315 0.18 -1.2
675,720 + HUW76_03315 0.19 -0.7
675,726 + HUW76_03315 0.20 +0.7
675,726 + HUW76_03315 0.20 +0.5
675,726 + HUW76_03315 0.20 -0.7
675,734 - HUW76_03315 0.22 +0.8
675,736 + HUW76_03315 0.22 -1.6
675,736 + HUW76_03315 0.22 -0.4
675,739 - HUW76_03315 0.23 +1.4
675,798 + HUW76_03315 0.33 -0.0
675,810 + HUW76_03315 0.35 +0.0
675,852 + HUW76_03315 0.43 -0.7
675,872 + HUW76_03315 0.46 -0.7
675,872 + HUW76_03315 0.46 -0.1
675,872 + HUW76_03315 0.46 -0.4
675,872 + HUW76_03315 0.46 -0.5
675,872 + HUW76_03315 0.46 -0.9
675,873 + HUW76_03315 0.46 -0.9
675,873 + HUW76_03315 0.46 -0.6
675,873 + HUW76_03315 0.46 -0.3
675,873 + HUW76_03315 0.46 -0.6
675,873 + HUW76_03315 0.46 -1.5
675,873 + HUW76_03315 0.46 -0.6
675,876 - HUW76_03315 0.47 +0.6
675,881 - HUW76_03315 0.48 +0.2
675,886 + HUW76_03315 0.49 -1.0
675,886 - HUW76_03315 0.49 +0.7
675,890 + HUW76_03315 0.49 -0.6
675,892 + HUW76_03315 0.50 -0.3
675,892 + HUW76_03315 0.50 +0.1
675,898 - HUW76_03315 0.51 -1.2
675,898 - HUW76_03315 0.51 -0.6
675,900 + HUW76_03315 0.51 -1.0
675,900 - HUW76_03315 0.51 +0.5
675,900 - HUW76_03315 0.51 -1.0
676,079 - HUW76_03315 0.83 +1.2
676,081 + HUW76_03315 0.83 -1.0
676,081 + HUW76_03315 0.83 -0.3
676,082 - HUW76_03315 0.83 +1.8
676,089 - HUW76_03315 0.84 -1.2
676,093 + HUW76_03315 0.85 +0.7
676,093 + HUW76_03315 0.85 -0.5
676,132 + -0.8
676,138 - +1.7
676,145 - +1.4
676,183 + -0.6
676,184 + +1.2
676,184 + -1.3
676,192 - +1.1
676,192 - -1.2
676,552 + -0.2
676,560 - -2.0
676,596 - -0.2
676,596 - -0.5
676,596 - +0.1
676,596 - -1.0
676,596 - -0.1
676,651 + +0.2
676,852 + -0.6
676,994 + HUW76_03325 0.28 -0.9
677,002 - HUW76_03325 0.29 -0.1
677,002 - HUW76_03325 0.29 -0.3
677,049 - HUW76_03325 0.35 +0.9
677,049 - HUW76_03325 0.35 +3.0
677,097 + HUW76_03325 0.42 +0.1
677,097 + HUW76_03325 0.42 -0.9
677,105 - HUW76_03325 0.43 +1.1
677,145 + HUW76_03325 0.48 +0.3
677,160 + HUW76_03325 0.50 -0.0
677,160 + HUW76_03325 0.50 +0.4
677,162 + HUW76_03325 0.50 +0.7
677,162 + HUW76_03325 0.50 -0.7
677,170 - HUW76_03325 0.51 +0.9
677,170 - HUW76_03325 0.51 +1.6
677,175 - HUW76_03325 0.52 +1.0

Or see this region's nucleotide sequence