Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02435

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02430 and HUW76_02435 are separated by 315 nucleotidesHUW76_02435 and HUW76_02440 are separated by 26 nucleotidesHUW76_02440 and HUW76_02445 are separated by 30 nucleotides HUW76_02430: HUW76_02430 - cytochrome c biogenesis protein CcdA, at 487,216 to 487,869 _02430 HUW76_02435: HUW76_02435 - redoxin family protein, at 488,185 to 488,829 _02435 HUW76_02440: HUW76_02440 - peptide-methionine (R)-S-oxide reductase MsrB, at 488,856 to 489,782 _02440 HUW76_02445: HUW76_02445 - response regulator, at 489,813 to 490,079 _02445 Position (kb) 488 489Strain fitness (log2 ratio) -1 0 1 2 3at 487.315 kb on - strand, within HUW76_02430at 487.317 kb on + strand, within HUW76_02430at 487.317 kb on + strand, within HUW76_02430at 487.317 kb on + strand, within HUW76_02430at 487.317 kb on + strand, within HUW76_02430at 487.317 kb on + strand, within HUW76_02430at 487.325 kb on - strand, within HUW76_02430at 487.325 kb on - strand, within HUW76_02430at 487.325 kb on - strand, within HUW76_02430at 487.325 kb on - strand, within HUW76_02430at 487.325 kb on - strand, within HUW76_02430at 487.342 kb on + strand, within HUW76_02430at 487.342 kb on + strand, within HUW76_02430at 487.348 kb on - strand, within HUW76_02430at 487.412 kb on + strand, within HUW76_02430at 487.417 kb on + strand, within HUW76_02430at 487.425 kb on - strand, within HUW76_02430at 487.549 kb on + strand, within HUW76_02430at 487.559 kb on + strand, within HUW76_02430at 487.559 kb on + strand, within HUW76_02430at 487.612 kb on - strand, within HUW76_02430at 487.619 kb on + strand, within HUW76_02430at 487.621 kb on - strand, within HUW76_02430at 487.631 kb on + strand, within HUW76_02430at 487.631 kb on + strand, within HUW76_02430at 487.639 kb on - strand, within HUW76_02430at 487.681 kb on + strand, within HUW76_02430at 487.681 kb on + strand, within HUW76_02430at 487.681 kb on + strand, within HUW76_02430at 487.689 kb on - strand, within HUW76_02430at 487.689 kb on - strand, within HUW76_02430at 487.699 kb on + strand, within HUW76_02430at 487.717 kb on + strand, within HUW76_02430at 487.717 kb on + strand, within HUW76_02430at 487.726 kb on + strand, within HUW76_02430at 487.726 kb on + strand, within HUW76_02430at 487.726 kb on + strand, within HUW76_02430at 487.726 kb on + strand, within HUW76_02430at 487.734 kb on - strand, within HUW76_02430at 487.734 kb on - strand, within HUW76_02430at 487.734 kb on - strand, within HUW76_02430at 487.790 kb on - strand, within HUW76_02430at 487.839 kb on - strandat 487.839 kb on - strandat 487.886 kb on - strandat 487.992 kb on + strandat 487.992 kb on + strandat 488.078 kb on + strandat 488.172 kb on - strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.182 kb on - strandat 488.182 kb on - strandat 488.215 kb on + strandat 488.243 kb on + strandat 488.264 kb on + strand, within HUW76_02435at 488.264 kb on + strand, within HUW76_02435at 488.264 kb on + strand, within HUW76_02435at 488.340 kb on + strand, within HUW76_02435at 488.391 kb on - strand, within HUW76_02435at 488.438 kb on + strand, within HUW76_02435at 488.440 kb on - strand, within HUW76_02435at 488.448 kb on + strand, within HUW76_02435at 488.507 kb on + strand, within HUW76_02435at 488.507 kb on + strand, within HUW76_02435at 488.549 kb on + strand, within HUW76_02435at 488.549 kb on + strand, within HUW76_02435at 488.581 kb on + strand, within HUW76_02435at 488.922 kb on + strandat 488.922 kb on + strandat 488.937 kb on - strandat 488.973 kb on + strand, within HUW76_02440at 488.973 kb on + strand, within HUW76_02440at 488.973 kb on + strand, within HUW76_02440at 488.973 kb on + strand, within HUW76_02440at 488.973 kb on + strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.991 kb on - strand, within HUW76_02440at 488.991 kb on - strand, within HUW76_02440at 488.991 kb on - strand, within HUW76_02440at 488.991 kb on - strand, within HUW76_02440at 488.991 kb on - strand, within HUW76_02440at 488.993 kb on + strand, within HUW76_02440at 488.993 kb on + strand, within HUW76_02440at 488.993 kb on + strand, within HUW76_02440at 489.001 kb on - strand, within HUW76_02440at 489.001 kb on - strand, within HUW76_02440at 489.010 kb on - strand, within HUW76_02440at 489.010 kb on - strand, within HUW76_02440at 489.026 kb on - strand, within HUW76_02440at 489.036 kb on - strand, within HUW76_02440at 489.082 kb on + strand, within HUW76_02440at 489.082 kb on + strand, within HUW76_02440at 489.108 kb on - strand, within HUW76_02440at 489.114 kb on + strand, within HUW76_02440at 489.114 kb on + strand, within HUW76_02440at 489.124 kb on - strand, within HUW76_02440at 489.167 kb on + strand, within HUW76_02440at 489.167 kb on + strand, within HUW76_02440at 489.247 kb on - strand, within HUW76_02440at 489.247 kb on - strand, within HUW76_02440at 489.322 kb on + strand, within HUW76_02440at 489.322 kb on + strand, within HUW76_02440at 489.410 kb on + strand, within HUW76_02440at 489.410 kb on + strand, within HUW76_02440at 489.476 kb on + strand, within HUW76_02440at 489.503 kb on + strand, within HUW76_02440at 489.503 kb on + strand, within HUW76_02440at 489.539 kb on + strand, within HUW76_02440at 489.547 kb on - strand, within HUW76_02440at 489.547 kb on - strand, within HUW76_02440at 489.605 kb on + strand, within HUW76_02440at 489.605 kb on + strand, within HUW76_02440at 489.610 kb on + strand, within HUW76_02440at 489.613 kb on - strand, within HUW76_02440at 489.613 kb on - strand, within HUW76_02440at 489.613 kb on - strand, within HUW76_02440at 489.618 kb on - strand, within HUW76_02440at 489.626 kb on - strand, within HUW76_02440at 489.659 kb on - strand, within HUW76_02440at 489.673 kb on + strand, within HUW76_02440at 489.706 kb on - strandat 489.719 kb on + strandat 489.758 kb on - strandat 489.759 kb on - strandat 489.759 kb on - strandat 489.783 kb on + strandat 489.783 kb on + strandat 489.815 kb on + strandat 489.815 kb on + strandat 489.819 kb on + strandat 489.821 kb on - strandat 489.821 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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487,315 - HUW76_02430 0.15 -0.9
487,317 + HUW76_02430 0.15 -0.5
487,317 + HUW76_02430 0.15 +0.2
487,317 + HUW76_02430 0.15 +0.2
487,317 + HUW76_02430 0.15 +0.6
487,317 + HUW76_02430 0.15 -0.6
487,325 - HUW76_02430 0.17 -0.2
487,325 - HUW76_02430 0.17 -0.2
487,325 - HUW76_02430 0.17 -0.7
487,325 - HUW76_02430 0.17 -0.3
487,325 - HUW76_02430 0.17 +0.7
487,342 + HUW76_02430 0.19 -0.2
487,342 + HUW76_02430 0.19 +0.3
487,348 - HUW76_02430 0.20 -0.9
487,412 + HUW76_02430 0.30 -0.8
487,417 + HUW76_02430 0.31 -0.1
487,425 - HUW76_02430 0.32 +0.6
487,549 + HUW76_02430 0.51 -0.5
487,559 + HUW76_02430 0.52 -0.5
487,559 + HUW76_02430 0.52 +0.1
487,612 - HUW76_02430 0.61 +1.1
487,619 + HUW76_02430 0.62 +0.8
487,621 - HUW76_02430 0.62 +1.2
487,631 + HUW76_02430 0.63 +0.1
487,631 + HUW76_02430 0.63 +0.0
487,639 - HUW76_02430 0.65 +0.7
487,681 + HUW76_02430 0.71 -1.2
487,681 + HUW76_02430 0.71 -0.3
487,681 + HUW76_02430 0.71 +0.5
487,689 - HUW76_02430 0.72 -0.5
487,689 - HUW76_02430 0.72 -0.7
487,699 + HUW76_02430 0.74 -0.3
487,717 + HUW76_02430 0.77 -0.4
487,717 + HUW76_02430 0.77 -0.4
487,726 + HUW76_02430 0.78 +0.1
487,726 + HUW76_02430 0.78 +0.7
487,726 + HUW76_02430 0.78 -0.8
487,726 + HUW76_02430 0.78 +1.1
487,734 - HUW76_02430 0.79 +0.4
487,734 - HUW76_02430 0.79 -1.7
487,734 - HUW76_02430 0.79 +0.5
487,790 - HUW76_02430 0.88 -1.7
487,839 - +0.7
487,839 - -0.4
487,886 - +0.8
487,992 + -0.1
487,992 + -0.3
488,078 + -0.3
488,172 - -0.3
488,174 + +0.9
488,174 + -0.4
488,174 + -0.0
488,174 + -0.6
488,182 - +0.5
488,182 - -1.5
488,215 + -0.4
488,243 + -0.4
488,264 + HUW76_02435 0.12 -1.0
488,264 + HUW76_02435 0.12 -0.7
488,264 + HUW76_02435 0.12 -0.1
488,340 + HUW76_02435 0.24 +0.1
488,391 - HUW76_02435 0.32 +1.4
488,438 + HUW76_02435 0.39 -0.8
488,440 - HUW76_02435 0.40 -0.1
488,448 + HUW76_02435 0.41 -0.0
488,507 + HUW76_02435 0.50 -0.1
488,507 + HUW76_02435 0.50 -0.6
488,549 + HUW76_02435 0.56 -0.5
488,549 + HUW76_02435 0.56 -0.5
488,581 + HUW76_02435 0.61 -0.2
488,922 + -0.7
488,922 + +0.4
488,937 - +0.7
488,973 + HUW76_02440 0.13 -0.1
488,973 + HUW76_02440 0.13 -0.7
488,973 + HUW76_02440 0.13 +0.2
488,973 + HUW76_02440 0.13 -0.4
488,973 + HUW76_02440 0.13 +0.1
488,981 - HUW76_02440 0.13 +1.8
488,981 - HUW76_02440 0.13 +1.0
488,981 - HUW76_02440 0.13 +0.7
488,981 - HUW76_02440 0.13 -1.1
488,981 - HUW76_02440 0.13 +1.8
488,981 - HUW76_02440 0.13 +2.8
488,981 - HUW76_02440 0.13 +0.8
488,983 + HUW76_02440 0.14 -0.0
488,983 + HUW76_02440 0.14 -0.4
488,983 + HUW76_02440 0.14 -0.8
488,983 + HUW76_02440 0.14 -0.4
488,983 + HUW76_02440 0.14 -0.6
488,983 + HUW76_02440 0.14 -0.7
488,983 + HUW76_02440 0.14 -0.5
488,983 + HUW76_02440 0.14 +0.0
488,983 + HUW76_02440 0.14 +0.3
488,983 + HUW76_02440 0.14 -0.0
488,983 + HUW76_02440 0.14 +0.3
488,983 + HUW76_02440 0.14 -0.4
488,983 + HUW76_02440 0.14 -0.4
488,983 + HUW76_02440 0.14 -0.5
488,983 + HUW76_02440 0.14 +0.0
488,991 - HUW76_02440 0.15 +1.1
488,991 - HUW76_02440 0.15 -0.3
488,991 - HUW76_02440 0.15 +0.9
488,991 - HUW76_02440 0.15 +1.5
488,991 - HUW76_02440 0.15 +1.9
488,993 + HUW76_02440 0.15 +0.2
488,993 + HUW76_02440 0.15 -0.8
488,993 + HUW76_02440 0.15 -1.4
489,001 - HUW76_02440 0.16 -1.5
489,001 - HUW76_02440 0.16 +1.4
489,010 - HUW76_02440 0.17 +0.9
489,010 - HUW76_02440 0.17 +0.0
489,026 - HUW76_02440 0.18 +0.9
489,036 - HUW76_02440 0.19 +1.3
489,082 + HUW76_02440 0.24 -0.6
489,082 + HUW76_02440 0.24 +0.2
489,108 - HUW76_02440 0.27 -0.6
489,114 + HUW76_02440 0.28 -0.0
489,114 + HUW76_02440 0.28 -0.5
489,124 - HUW76_02440 0.29 -1.1
489,167 + HUW76_02440 0.34 +0.2
489,167 + HUW76_02440 0.34 +1.0
489,247 - HUW76_02440 0.42 +0.2
489,247 - HUW76_02440 0.42 -1.3
489,322 + HUW76_02440 0.50 +0.1
489,322 + HUW76_02440 0.50 +0.0
489,410 + HUW76_02440 0.60 -0.2
489,410 + HUW76_02440 0.60 -0.3
489,476 + HUW76_02440 0.67 -0.8
489,503 + HUW76_02440 0.70 +0.9
489,503 + HUW76_02440 0.70 +0.3
489,539 + HUW76_02440 0.74 -0.3
489,547 - HUW76_02440 0.75 +1.1
489,547 - HUW76_02440 0.75 +0.4
489,605 + HUW76_02440 0.81 -0.3
489,605 + HUW76_02440 0.81 +0.0
489,610 + HUW76_02440 0.81 +1.3
489,613 - HUW76_02440 0.82 +1.5
489,613 - HUW76_02440 0.82 +1.0
489,613 - HUW76_02440 0.82 -0.0
489,618 - HUW76_02440 0.82 +1.2
489,626 - HUW76_02440 0.83 +1.1
489,659 - HUW76_02440 0.87 +0.4
489,673 + HUW76_02440 0.88 -0.6
489,706 - +0.1
489,719 + -0.5
489,758 - -0.8
489,759 - +0.6
489,759 - +0.6
489,783 + -0.4
489,783 + -0.0
489,815 + -0.4
489,815 + -0.4
489,819 + +0.1
489,821 - +0.1
489,821 - +0.3

Or see this region's nucleotide sequence