Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02215

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02205 and HUW76_02210 are separated by 15 nucleotidesHUW76_02210 and HUW76_02215 are separated by 36 nucleotidesHUW76_02215 and HUW76_02220 are separated by 23 nucleotidesHUW76_02220 and HUW76_02225 are separated by 222 nucleotides HUW76_02205: HUW76_02205 - hypothetical protein, at 445,014 to 445,571 _02205 HUW76_02210: HUW76_02210 - hemagglutinin repeat-containing protein, at 445,587 to 446,330 _02210 HUW76_02215: HUW76_02215 - hypothetical protein, at 446,367 to 446,843 _02215 HUW76_02220: HUW76_02220 - hypothetical protein, at 446,867 to 447,346 _02220 HUW76_02225: HUW76_02225 - phosphate acyltransferase PlsX, at 447,569 to 448,567 _02225 Position (kb) 446 447Strain fitness (log2 ratio) -2 -1 0 1 2at 445.374 kb on + strand, within HUW76_02205at 445.374 kb on + strand, within HUW76_02205at 445.374 kb on + strand, within HUW76_02205at 445.487 kb on - strand, within HUW76_02205at 445.494 kb on + strand, within HUW76_02205at 445.494 kb on + strand, within HUW76_02205at 445.672 kb on + strand, within HUW76_02210at 445.705 kb on - strand, within HUW76_02210at 445.705 kb on - strand, within HUW76_02210at 445.727 kb on - strand, within HUW76_02210at 445.745 kb on - strand, within HUW76_02210at 445.754 kb on - strand, within HUW76_02210at 445.754 kb on - strand, within HUW76_02210at 445.870 kb on + strand, within HUW76_02210at 445.876 kb on - strand, within HUW76_02210at 445.876 kb on - strand, within HUW76_02210at 445.876 kb on - strand, within HUW76_02210at 445.878 kb on - strand, within HUW76_02210at 445.878 kb on - strand, within HUW76_02210at 445.886 kb on - strand, within HUW76_02210at 445.887 kb on + strand, within HUW76_02210at 445.887 kb on + strand, within HUW76_02210at 445.890 kb on - strand, within HUW76_02210at 445.906 kb on + strand, within HUW76_02210at 445.913 kb on + strand, within HUW76_02210at 445.921 kb on - strand, within HUW76_02210at 445.921 kb on - strand, within HUW76_02210at 445.927 kb on + strand, within HUW76_02210at 446.016 kb on + strand, within HUW76_02210at 446.016 kb on + strand, within HUW76_02210at 446.016 kb on + strand, within HUW76_02210at 446.016 kb on + strand, within HUW76_02210at 446.249 kb on - strand, within HUW76_02210at 446.249 kb on - strand, within HUW76_02210at 446.259 kb on - strandat 446.267 kb on + strandat 446.267 kb on + strandat 446.292 kb on + strandat 446.320 kb on - strandat 446.364 kb on - strandat 446.364 kb on - strandat 446.364 kb on - strandat 446.364 kb on - strandat 446.469 kb on + strand, within HUW76_02215at 446.469 kb on + strand, within HUW76_02215at 446.496 kb on + strand, within HUW76_02215at 446.504 kb on - strand, within HUW76_02215at 446.504 kb on - strand, within HUW76_02215at 446.542 kb on + strand, within HUW76_02215at 446.542 kb on + strand, within HUW76_02215at 446.543 kb on + strand, within HUW76_02215at 446.544 kb on + strand, within HUW76_02215at 446.544 kb on + strand, within HUW76_02215at 446.544 kb on + strand, within HUW76_02215at 446.550 kb on - strand, within HUW76_02215at 446.550 kb on - strand, within HUW76_02215at 446.573 kb on + strand, within HUW76_02215at 446.573 kb on + strand, within HUW76_02215at 446.635 kb on + strand, within HUW76_02215at 446.635 kb on + strand, within HUW76_02215at 446.645 kb on + strand, within HUW76_02215at 446.739 kb on + strand, within HUW76_02215at 446.791 kb on + strand, within HUW76_02215at 446.791 kb on + strand, within HUW76_02215at 446.800 kb on - strandat 446.800 kb on - strandat 446.800 kb on - strandat 446.842 kb on - strandat 446.842 kb on - strandat 446.949 kb on + strand, within HUW76_02220at 446.956 kb on - strand, within HUW76_02220at 447.014 kb on + strand, within HUW76_02220at 447.014 kb on + strand, within HUW76_02220at 447.151 kb on - strand, within HUW76_02220at 447.151 kb on - strand, within HUW76_02220at 447.189 kb on + strand, within HUW76_02220at 447.189 kb on + strand, within HUW76_02220at 447.197 kb on - strand, within HUW76_02220at 447.197 kb on - strand, within HUW76_02220at 447.255 kb on + strand, within HUW76_02220at 447.255 kb on + strand, within HUW76_02220at 447.290 kb on + strand, within HUW76_02220at 447.290 kb on + strand, within HUW76_02220at 447.423 kb on + strandat 447.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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445,374 + HUW76_02205 0.65 +0.0
445,374 + HUW76_02205 0.65 -2.0
445,374 + HUW76_02205 0.65 -0.1
445,487 - HUW76_02205 0.85 +2.6
445,494 + HUW76_02205 0.86 -0.2
445,494 + HUW76_02205 0.86 -1.1
445,672 + HUW76_02210 0.11 -0.2
445,705 - HUW76_02210 0.16 +1.1
445,705 - HUW76_02210 0.16 +0.5
445,727 - HUW76_02210 0.19 +0.9
445,745 - HUW76_02210 0.21 -0.1
445,754 - HUW76_02210 0.22 +0.5
445,754 - HUW76_02210 0.22 -1.5
445,870 + HUW76_02210 0.38 +0.2
445,876 - HUW76_02210 0.39 +0.2
445,876 - HUW76_02210 0.39 +0.5
445,876 - HUW76_02210 0.39 -1.3
445,878 - HUW76_02210 0.39 +0.4
445,878 - HUW76_02210 0.39 +0.8
445,886 - HUW76_02210 0.40 +0.5
445,887 + HUW76_02210 0.40 -0.9
445,887 + HUW76_02210 0.40 -0.2
445,890 - HUW76_02210 0.41 +0.3
445,906 + HUW76_02210 0.43 +0.1
445,913 + HUW76_02210 0.44 -0.6
445,921 - HUW76_02210 0.45 -0.0
445,921 - HUW76_02210 0.45 +0.1
445,927 + HUW76_02210 0.46 +0.1
446,016 + HUW76_02210 0.58 -0.6
446,016 + HUW76_02210 0.58 +0.6
446,016 + HUW76_02210 0.58 -0.6
446,016 + HUW76_02210 0.58 +0.3
446,249 - HUW76_02210 0.89 -1.9
446,249 - HUW76_02210 0.89 -0.0
446,259 - +0.0
446,267 + -0.8
446,267 + -0.0
446,292 + +0.4
446,320 - +0.9
446,364 - +0.2
446,364 - +1.0
446,364 - +0.1
446,364 - +0.3
446,469 + HUW76_02215 0.21 -0.4
446,469 + HUW76_02215 0.21 -1.4
446,496 + HUW76_02215 0.27 -0.9
446,504 - HUW76_02215 0.29 -0.2
446,504 - HUW76_02215 0.29 -0.0
446,542 + HUW76_02215 0.37 -0.2
446,542 + HUW76_02215 0.37 -0.2
446,543 + HUW76_02215 0.37 -0.5
446,544 + HUW76_02215 0.37 -1.1
446,544 + HUW76_02215 0.37 -0.2
446,544 + HUW76_02215 0.37 -0.5
446,550 - HUW76_02215 0.38 -0.4
446,550 - HUW76_02215 0.38 -0.3
446,573 + HUW76_02215 0.43 -0.4
446,573 + HUW76_02215 0.43 -0.3
446,635 + HUW76_02215 0.56 -0.3
446,635 + HUW76_02215 0.56 -0.3
446,645 + HUW76_02215 0.58 +0.3
446,739 + HUW76_02215 0.78 +0.1
446,791 + HUW76_02215 0.89 +0.1
446,791 + HUW76_02215 0.89 -0.6
446,800 - -0.3
446,800 - +1.5
446,800 - +2.0
446,842 - +0.2
446,842 - +1.6
446,949 + HUW76_02220 0.17 -0.6
446,956 - HUW76_02220 0.19 +0.1
447,014 + HUW76_02220 0.31 -0.8
447,014 + HUW76_02220 0.31 -0.4
447,151 - HUW76_02220 0.59 +0.2
447,151 - HUW76_02220 0.59 +0.9
447,189 + HUW76_02220 0.67 -0.2
447,189 + HUW76_02220 0.67 -0.2
447,197 - HUW76_02220 0.69 +1.5
447,197 - HUW76_02220 0.69 -0.4
447,255 + HUW76_02220 0.81 -0.7
447,255 + HUW76_02220 0.81 -0.6
447,290 + HUW76_02220 0.88 -0.0
447,290 + HUW76_02220 0.88 -0.1
447,423 + -0.6
447,423 + +0.2

Or see this region's nucleotide sequence