Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01380

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01375 and HUW76_01380 overlap by 8 nucleotidesHUW76_01380 and HUW76_01385 are separated by 27 nucleotides HUW76_01375: HUW76_01375 - glycosyltransferase family 4 protein, at 269,029 to 270,270 _01375 HUW76_01380: HUW76_01380 - Gfo/Idh/MocA family oxidoreductase, at 270,263 to 271,339 _01380 HUW76_01385: HUW76_01385 - glycosyltransferase, at 271,367 to 272,461 _01385 Position (kb) 270 271 272Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 269.272 kb on + strand, within HUW76_01375at 269.280 kb on - strand, within HUW76_01375at 269.280 kb on - strand, within HUW76_01375at 269.322 kb on - strand, within HUW76_01375at 269.346 kb on + strand, within HUW76_01375at 269.346 kb on + strand, within HUW76_01375at 269.346 kb on + strand, within HUW76_01375at 269.346 kb on + strand, within HUW76_01375at 269.354 kb on - strand, within HUW76_01375at 269.384 kb on + strand, within HUW76_01375at 269.401 kb on + strand, within HUW76_01375at 269.401 kb on + strand, within HUW76_01375at 269.554 kb on + strand, within HUW76_01375at 269.567 kb on + strand, within HUW76_01375at 269.567 kb on + strand, within HUW76_01375at 269.602 kb on - strand, within HUW76_01375at 269.627 kb on - strand, within HUW76_01375at 269.639 kb on - strand, within HUW76_01375at 269.709 kb on + strand, within HUW76_01375at 269.709 kb on + strand, within HUW76_01375at 269.742 kb on + strand, within HUW76_01375at 269.742 kb on + strand, within HUW76_01375at 269.749 kb on + strand, within HUW76_01375at 269.757 kb on - strand, within HUW76_01375at 269.757 kb on - strand, within HUW76_01375at 269.867 kb on - strand, within HUW76_01375at 269.867 kb on - strand, within HUW76_01375at 269.880 kb on + strand, within HUW76_01375at 269.880 kb on + strand, within HUW76_01375at 269.946 kb on - strand, within HUW76_01375at 270.046 kb on + strand, within HUW76_01375at 270.143 kb on + strand, within HUW76_01375at 270.143 kb on + strand, within HUW76_01375at 270.278 kb on + strandat 270.278 kb on + strandat 270.278 kb on + strandat 270.286 kb on - strandat 270.286 kb on - strandat 270.286 kb on - strandat 270.358 kb on + strandat 270.568 kb on + strand, within HUW76_01380at 270.568 kb on + strand, within HUW76_01380at 270.608 kb on - strand, within HUW76_01380at 270.642 kb on - strand, within HUW76_01380at 270.765 kb on + strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.866 kb on + strand, within HUW76_01380at 270.868 kb on + strand, within HUW76_01380at 270.868 kb on + strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.891 kb on + strand, within HUW76_01380at 270.930 kb on - strand, within HUW76_01380at 270.943 kb on - strand, within HUW76_01380at 270.979 kb on - strand, within HUW76_01380at 270.979 kb on - strand, within HUW76_01380at 270.979 kb on - strand, within HUW76_01380at 271.013 kb on + strand, within HUW76_01380at 271.013 kb on + strand, within HUW76_01380at 271.072 kb on + strand, within HUW76_01380at 271.072 kb on + strand, within HUW76_01380at 271.088 kb on + strand, within HUW76_01380at 271.088 kb on + strand, within HUW76_01380at 271.099 kb on - strand, within HUW76_01380at 271.141 kb on - strand, within HUW76_01380at 271.143 kb on - strand, within HUW76_01380at 271.143 kb on - strand, within HUW76_01380at 271.158 kb on + strand, within HUW76_01380at 271.168 kb on - strand, within HUW76_01380at 271.347 kb on + strandat 271.347 kb on + strandat 271.349 kb on + strandat 271.390 kb on + strandat 271.407 kb on + strandat 271.407 kb on + strandat 271.474 kb on + strandat 271.474 kb on + strandat 271.510 kb on + strand, within HUW76_01385at 271.510 kb on + strand, within HUW76_01385at 271.510 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.516 kb on + strand, within HUW76_01385at 271.516 kb on + strand, within HUW76_01385at 271.516 kb on + strand, within HUW76_01385at 271.643 kb on + strand, within HUW76_01385at 271.643 kb on + strand, within HUW76_01385at 271.688 kb on + strand, within HUW76_01385at 271.688 kb on + strand, within HUW76_01385at 271.725 kb on + strand, within HUW76_01385at 271.777 kb on + strand, within HUW76_01385at 271.839 kb on + strand, within HUW76_01385at 271.845 kb on + strand, within HUW76_01385at 271.900 kb on + strand, within HUW76_01385at 271.933 kb on + strand, within HUW76_01385at 272.048 kb on + strand, within HUW76_01385at 272.048 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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269,272 + HUW76_01375 0.20 +1.7
269,280 - HUW76_01375 0.20 +2.6
269,280 - HUW76_01375 0.20 +1.9
269,322 - HUW76_01375 0.24 +1.5
269,346 + HUW76_01375 0.26 +0.5
269,346 + HUW76_01375 0.26 +1.5
269,346 + HUW76_01375 0.26 +0.6
269,346 + HUW76_01375 0.26 +3.6
269,354 - HUW76_01375 0.26 +1.4
269,384 + HUW76_01375 0.29 +0.6
269,401 + HUW76_01375 0.30 +1.9
269,401 + HUW76_01375 0.30 +2.3
269,554 + HUW76_01375 0.42 +1.9
269,567 + HUW76_01375 0.43 +1.7
269,567 + HUW76_01375 0.43 +1.9
269,602 - HUW76_01375 0.46 +2.2
269,627 - HUW76_01375 0.48 +2.2
269,639 - HUW76_01375 0.49 +0.6
269,709 + HUW76_01375 0.55 +1.5
269,709 + HUW76_01375 0.55 +0.3
269,742 + HUW76_01375 0.57 +5.4
269,742 + HUW76_01375 0.57 +1.9
269,749 + HUW76_01375 0.58 +1.6
269,757 - HUW76_01375 0.59 +1.7
269,757 - HUW76_01375 0.59 +1.8
269,867 - HUW76_01375 0.67 +1.7
269,867 - HUW76_01375 0.67 +1.5
269,880 + HUW76_01375 0.69 -0.5
269,880 + HUW76_01375 0.69 +1.2
269,946 - HUW76_01375 0.74 +2.2
270,046 + HUW76_01375 0.82 +0.4
270,143 + HUW76_01375 0.90 -0.1
270,143 + HUW76_01375 0.90 +1.5
270,278 + -0.2
270,278 + +1.1
270,278 + +0.4
270,286 - +1.6
270,286 - +1.4
270,286 - +3.2
270,358 + +0.1
270,568 + HUW76_01380 0.28 +0.8
270,568 + HUW76_01380 0.28 +1.2
270,608 - HUW76_01380 0.32 +0.4
270,642 - HUW76_01380 0.35 +2.2
270,765 + HUW76_01380 0.47 +1.3
270,784 - HUW76_01380 0.48 +1.6
270,784 - HUW76_01380 0.48 +1.7
270,784 - HUW76_01380 0.48 +1.0
270,784 - HUW76_01380 0.48 +1.3
270,866 + HUW76_01380 0.56 +0.9
270,868 + HUW76_01380 0.56 +0.6
270,868 + HUW76_01380 0.56 -0.3
270,876 - HUW76_01380 0.57 +2.0
270,876 - HUW76_01380 0.57 +1.0
270,876 - HUW76_01380 0.57 +1.7
270,876 - HUW76_01380 0.57 +3.4
270,891 + HUW76_01380 0.58 +0.9
270,930 - HUW76_01380 0.62 +2.9
270,943 - HUW76_01380 0.63 +1.4
270,979 - HUW76_01380 0.66 +1.6
270,979 - HUW76_01380 0.66 +0.8
270,979 - HUW76_01380 0.66 +1.1
271,013 + HUW76_01380 0.70 +0.7
271,013 + HUW76_01380 0.70 +0.9
271,072 + HUW76_01380 0.75 +0.9
271,072 + HUW76_01380 0.75 +1.0
271,088 + HUW76_01380 0.77 +0.2
271,088 + HUW76_01380 0.77 +1.0
271,099 - HUW76_01380 0.78 +0.6
271,141 - HUW76_01380 0.82 +3.6
271,143 - HUW76_01380 0.82 +2.3
271,143 - HUW76_01380 0.82 +1.2
271,158 + HUW76_01380 0.83 +1.1
271,168 - HUW76_01380 0.84 +2.1
271,347 + -0.3
271,347 + -0.6
271,349 + -0.7
271,390 + -0.2
271,407 + +0.2
271,407 + +0.4
271,474 + +1.6
271,474 + +0.8
271,510 + HUW76_01385 0.13 +0.9
271,510 + HUW76_01385 0.13 +0.6
271,510 + HUW76_01385 0.13 +0.7
271,511 + HUW76_01385 0.13 +1.6
271,511 + HUW76_01385 0.13 +0.2
271,511 + HUW76_01385 0.13 +0.7
271,511 + HUW76_01385 0.13 +1.4
271,511 + HUW76_01385 0.13 +1.3
271,516 + HUW76_01385 0.14 +1.1
271,516 + HUW76_01385 0.14 +0.3
271,516 + HUW76_01385 0.14 +0.0
271,643 + HUW76_01385 0.25 +0.5
271,643 + HUW76_01385 0.25 +1.0
271,688 + HUW76_01385 0.29 -0.2
271,688 + HUW76_01385 0.29 -0.6
271,725 + HUW76_01385 0.33 +0.3
271,777 + HUW76_01385 0.37 +0.4
271,839 + HUW76_01385 0.43 +0.4
271,845 + HUW76_01385 0.44 +0.4
271,900 + HUW76_01385 0.49 +1.0
271,933 + HUW76_01385 0.52 -0.0
272,048 + HUW76_01385 0.62 +1.0
272,048 + HUW76_01385 0.62 +2.2
272,198 + HUW76_01385 0.76 +0.6
272,198 + HUW76_01385 0.76 +0.6
272,198 + HUW76_01385 0.76 +1.6
272,198 + HUW76_01385 0.76 -1.2

Or see this region's nucleotide sequence