Experiment: Time0_glycerolstock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_00505 and HUW76_00510 are separated by 326 nucleotides HUW76_00510 and HUW76_00515 overlap by 1 nucleotides HUW76_00515 and HUW76_00520 overlap by 8 nucleotides
HUW76_00505: HUW76_00505 - ferredoxin--NADP reductase, at 100,365 to 101,039
_00505
HUW76_00510: HUW76_00510 - glutaredoxin family protein, at 101,366 to 101,569
_00510
HUW76_00515: HUW76_00515 - ribonucleoside-diphosphate reductase subunit alpha, at 101,569 to 103,836
_00515
HUW76_00520: HUW76_00520 - ribonucleotide-diphosphate reductase subunit beta, at 103,829 to 104,863
_00520
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -1
0
1
2 at 100.618 kb on + strand, within HUW76_00505 at 100.618 kb on + strand, within HUW76_00505 at 100.626 kb on - strand, within HUW76_00505 at 100.633 kb on + strand, within HUW76_00505 at 100.755 kb on + strand, within HUW76_00505 at 100.768 kb on - strand, within HUW76_00505 at 100.822 kb on - strand, within HUW76_00505 at 100.822 kb on - strand, within HUW76_00505 at 100.875 kb on - strand, within HUW76_00505 at 100.881 kb on - strand, within HUW76_00505 at 100.881 kb on - strand, within HUW76_00505 at 100.929 kb on + strand, within HUW76_00505 at 100.992 kb on - strand at 100.996 kb on + strand at 100.996 kb on + strand at 101.050 kb on + strand at 101.347 kb on + strand at 103.449 kb on + strand, within HUW76_00515 at 103.449 kb on + strand, within HUW76_00515 at 103.545 kb on + strand, within HUW76_00515 at 103.954 kb on + strand, within HUW76_00520
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_glycerolstock remove 100,618 + HUW76_00505 0.37 +1.9 100,618 + HUW76_00505 0.37 +2.0 100,626 - HUW76_00505 0.39 -1.0 100,633 + HUW76_00505 0.40 -0.2 100,755 + HUW76_00505 0.58 +0.4 100,768 - HUW76_00505 0.60 +0.8 100,822 - HUW76_00505 0.68 -1.5 100,822 - HUW76_00505 0.68 +0.2 100,875 - HUW76_00505 0.76 -0.1 100,881 - HUW76_00505 0.76 +1.1 100,881 - HUW76_00505 0.76 -0.2 100,929 + HUW76_00505 0.84 +1.8 100,992 - +0.2 100,996 + +0.0 100,996 + +0.9 101,050 + +0.0 101,347 + -0.5 103,449 + HUW76_00515 0.83 +1.6 103,449 + HUW76_00515 0.83 +0.3 103,545 + HUW76_00515 0.87 -0.3 103,954 + HUW76_00520 0.12 -0.6
Or see this region's nucleotide sequence