Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00150

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_00145 and HUW76_00150 are separated by 274 nucleotidesHUW76_00150 and HUW76_00155 are separated by 292 nucleotidesHUW76_00155 and HUW76_00160 overlap by 1 nucleotides HUW76_00145: HUW76_00145 - Mrp/NBP35 family ATP-binding protein, at 31,113 to 31,886 _00145 HUW76_00150: HUW76_00150 - hypothetical protein, at 32,161 to 32,325 _00150 HUW76_00155: HUW76_00155 - hypothetical protein, at 32,618 to 33,109 _00155 HUW76_00160: HUW76_00160 - hypothetical protein, at 33,109 to 33,291 _00160 Position (kb) 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 31.173 kb on + strandat 31.197 kb on + strand, within HUW76_00145at 31.197 kb on + strand, within HUW76_00145at 31.213 kb on + strand, within HUW76_00145at 31.213 kb on + strand, within HUW76_00145at 31.223 kb on + strand, within HUW76_00145at 31.271 kb on + strand, within HUW76_00145at 31.271 kb on + strand, within HUW76_00145at 31.272 kb on + strand, within HUW76_00145at 31.272 kb on + strand, within HUW76_00145at 31.272 kb on + strand, within HUW76_00145at 31.272 kb on + strand, within HUW76_00145at 31.279 kb on - strand, within HUW76_00145at 31.280 kb on - strand, within HUW76_00145at 31.281 kb on + strand, within HUW76_00145at 31.281 kb on + strand, within HUW76_00145at 31.283 kb on + strand, within HUW76_00145at 31.283 kb on + strand, within HUW76_00145at 31.291 kb on + strand, within HUW76_00145at 31.391 kb on + strand, within HUW76_00145at 31.391 kb on + strand, within HUW76_00145at 31.398 kb on - strand, within HUW76_00145at 31.416 kb on + strand, within HUW76_00145at 31.416 kb on + strand, within HUW76_00145at 31.416 kb on + strand, within HUW76_00145at 31.416 kb on + strand, within HUW76_00145at 31.424 kb on + strand, within HUW76_00145at 31.424 kb on + strand, within HUW76_00145at 31.424 kb on + strand, within HUW76_00145at 31.424 kb on + strand, within HUW76_00145at 31.424 kb on + strand, within HUW76_00145at 31.424 kb on - strand, within HUW76_00145at 31.424 kb on - strand, within HUW76_00145at 31.432 kb on - strand, within HUW76_00145at 31.432 kb on - strand, within HUW76_00145at 31.432 kb on - strand, within HUW76_00145at 31.444 kb on + strand, within HUW76_00145at 31.444 kb on + strand, within HUW76_00145at 31.455 kb on - strand, within HUW76_00145at 31.468 kb on + strand, within HUW76_00145at 31.482 kb on + strand, within HUW76_00145at 31.482 kb on + strand, within HUW76_00145at 31.482 kb on + strand, within HUW76_00145at 31.482 kb on + strand, within HUW76_00145at 31.482 kb on + strand, within HUW76_00145at 31.503 kb on + strand, within HUW76_00145at 31.503 kb on + strand, within HUW76_00145at 31.516 kb on + strand, within HUW76_00145at 31.524 kb on - strand, within HUW76_00145at 31.529 kb on + strand, within HUW76_00145at 31.529 kb on + strand, within HUW76_00145at 31.529 kb on + strand, within HUW76_00145at 31.530 kb on + strand, within HUW76_00145at 31.530 kb on + strand, within HUW76_00145at 31.539 kb on + strand, within HUW76_00145at 31.539 kb on + strand, within HUW76_00145at 31.539 kb on - strand, within HUW76_00145at 31.539 kb on - strand, within HUW76_00145at 31.547 kb on - strand, within HUW76_00145at 31.547 kb on - strand, within HUW76_00145at 31.617 kb on + strand, within HUW76_00145at 31.686 kb on - strand, within HUW76_00145at 31.686 kb on - strand, within HUW76_00145at 31.731 kb on + strand, within HUW76_00145at 31.731 kb on + strand, within HUW76_00145at 31.764 kb on - strand, within HUW76_00145at 31.783 kb on - strand, within HUW76_00145at 31.783 kb on - strand, within HUW76_00145at 31.784 kb on - strand, within HUW76_00145at 31.786 kb on - strand, within HUW76_00145at 31.814 kb on + strandat 31.814 kb on + strandat 31.858 kb on + strandat 31.858 kb on + strandat 31.858 kb on + strandat 31.858 kb on + strandat 31.858 kb on + strandat 31.858 kb on + strandat 31.866 kb on - strandat 31.920 kb on - strandat 31.920 kb on - strandat 32.013 kb on + strandat 32.013 kb on + strandat 32.018 kb on - strandat 32.021 kb on - strandat 32.056 kb on + strandat 32.056 kb on + strandat 32.063 kb on - strandat 32.063 kb on - strandat 32.063 kb on - strandat 32.114 kb on - strandat 32.114 kb on - strandat 32.145 kb on + strandat 32.145 kb on + strandat 32.276 kb on + strand, within HUW76_00150at 32.276 kb on + strand, within HUW76_00150at 32.302 kb on - strand, within HUW76_00150at 32.302 kb on - strand, within HUW76_00150at 32.307 kb on - strand, within HUW76_00150at 32.307 kb on - strand, within HUW76_00150at 32.361 kb on + strandat 32.361 kb on + strandat 32.449 kb on + strandat 32.457 kb on + strandat 32.465 kb on - strandat 32.596 kb on - strandat 32.672 kb on - strand, within HUW76_00155at 32.672 kb on - strand, within HUW76_00155at 32.844 kb on + strand, within HUW76_00155at 32.844 kb on + strand, within HUW76_00155at 32.850 kb on - strand, within HUW76_00155at 32.873 kb on - strand, within HUW76_00155at 33.049 kb on - strand, within HUW76_00155at 33.065 kb on + strandat 33.102 kb on - strandat 33.102 kb on - strandat 33.191 kb on + strand, within HUW76_00160at 33.191 kb on + strand, within HUW76_00160at 33.255 kb on - strand, within HUW76_00160at 33.271 kb on - strand, within HUW76_00160

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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31,173 + -0.9
31,197 + HUW76_00145 0.11 -0.4
31,197 + HUW76_00145 0.11 +0.7
31,213 + HUW76_00145 0.13 -0.1
31,213 + HUW76_00145 0.13 -0.4
31,223 + HUW76_00145 0.14 +0.2
31,271 + HUW76_00145 0.20 +0.2
31,271 + HUW76_00145 0.20 -0.1
31,272 + HUW76_00145 0.21 +1.1
31,272 + HUW76_00145 0.21 +0.1
31,272 + HUW76_00145 0.21 +0.6
31,272 + HUW76_00145 0.21 +0.2
31,279 - HUW76_00145 0.21 +1.0
31,280 - HUW76_00145 0.22 +0.9
31,281 + HUW76_00145 0.22 -0.5
31,281 + HUW76_00145 0.22 +0.6
31,283 + HUW76_00145 0.22 +0.1
31,283 + HUW76_00145 0.22 +0.2
31,291 + HUW76_00145 0.23 +0.4
31,391 + HUW76_00145 0.36 -0.6
31,391 + HUW76_00145 0.36 -0.3
31,398 - HUW76_00145 0.37 +0.8
31,416 + HUW76_00145 0.39 -0.7
31,416 + HUW76_00145 0.39 -0.3
31,416 + HUW76_00145 0.39 +0.1
31,416 + HUW76_00145 0.39 +0.2
31,424 + HUW76_00145 0.40 -0.9
31,424 + HUW76_00145 0.40 -0.9
31,424 + HUW76_00145 0.40 -0.1
31,424 + HUW76_00145 0.40 -0.4
31,424 + HUW76_00145 0.40 -0.6
31,424 - HUW76_00145 0.40 +0.2
31,424 - HUW76_00145 0.40 -1.3
31,432 - HUW76_00145 0.41 -1.7
31,432 - HUW76_00145 0.41 +1.3
31,432 - HUW76_00145 0.41 +0.3
31,444 + HUW76_00145 0.43 +0.6
31,444 + HUW76_00145 0.43 +0.4
31,455 - HUW76_00145 0.44 +0.4
31,468 + HUW76_00145 0.46 -0.0
31,482 + HUW76_00145 0.48 -0.1
31,482 + HUW76_00145 0.48 -1.6
31,482 + HUW76_00145 0.48 -1.8
31,482 + HUW76_00145 0.48 -0.3
31,482 + HUW76_00145 0.48 -0.5
31,503 + HUW76_00145 0.50 -0.1
31,503 + HUW76_00145 0.50 -0.9
31,516 + HUW76_00145 0.52 -0.1
31,524 - HUW76_00145 0.53 -0.9
31,529 + HUW76_00145 0.54 -0.6
31,529 + HUW76_00145 0.54 +0.4
31,529 + HUW76_00145 0.54 +0.2
31,530 + HUW76_00145 0.54 -1.0
31,530 + HUW76_00145 0.54 -0.0
31,539 + HUW76_00145 0.55 -0.6
31,539 + HUW76_00145 0.55 -0.4
31,539 - HUW76_00145 0.55 -0.3
31,539 - HUW76_00145 0.55 +0.5
31,547 - HUW76_00145 0.56 +1.2
31,547 - HUW76_00145 0.56 +1.8
31,617 + HUW76_00145 0.65 -0.3
31,686 - HUW76_00145 0.74 +0.3
31,686 - HUW76_00145 0.74 +1.0
31,731 + HUW76_00145 0.80 +0.0
31,731 + HUW76_00145 0.80 -0.4
31,764 - HUW76_00145 0.84 +1.9
31,783 - HUW76_00145 0.87 +1.6
31,783 - HUW76_00145 0.87 +0.6
31,784 - HUW76_00145 0.87 -0.3
31,786 - HUW76_00145 0.87 +0.0
31,814 + -1.4
31,814 + +0.2
31,858 + -0.4
31,858 + -0.7
31,858 + -0.2
31,858 + -0.5
31,858 + -0.4
31,858 + -0.8
31,866 - +0.7
31,920 - -0.3
31,920 - -0.8
32,013 + -1.2
32,013 + -0.3
32,018 - -0.8
32,021 - +1.6
32,056 + +0.7
32,056 + +0.6
32,063 - -1.5
32,063 - -0.2
32,063 - -0.4
32,114 - -0.5
32,114 - -0.3
32,145 + -0.3
32,145 + +0.9
32,276 + HUW76_00150 0.70 +0.3
32,276 + HUW76_00150 0.70 +0.3
32,302 - HUW76_00150 0.85 -0.9
32,302 - HUW76_00150 0.85 -0.4
32,307 - HUW76_00150 0.88 -0.0
32,307 - HUW76_00150 0.88 -0.3
32,361 + -0.4
32,361 + +1.4
32,449 + +0.4
32,457 + +1.8
32,465 - -0.5
32,596 - -0.3
32,672 - HUW76_00155 0.11 -0.8
32,672 - HUW76_00155 0.11 +0.7
32,844 + HUW76_00155 0.46 -1.0
32,844 + HUW76_00155 0.46 +0.3
32,850 - HUW76_00155 0.47 -0.4
32,873 - HUW76_00155 0.52 -0.4
33,049 - HUW76_00155 0.88 -0.3
33,065 + -0.1
33,102 - +1.0
33,102 - -0.2
33,191 + HUW76_00160 0.45 -0.6
33,191 + HUW76_00160 0.45 -0.8
33,255 - HUW76_00160 0.80 +0.7
33,271 - HUW76_00160 0.89 +0.6

Or see this region's nucleotide sequence