Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00120

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_00110 and HUW76_00115 are separated by 35 nucleotidesHUW76_00115 and HUW76_00120 are separated by 302 nucleotidesHUW76_00120 and HUW76_00125 are separated by 122 nucleotides HUW76_00110: HUW76_00110 - AAA family ATPase, at 23,338 to 24,960 _00110 HUW76_00115: HUW76_00115 - single-stranded DNA-binding protein, at 24,996 to 25,235 _00115 HUW76_00120: HUW76_00120 - hypothetical protein, at 25,538 to 25,807 _00120 HUW76_00125: HUW76_00125 - ATP-binding cassette domain-containing protein, at 25,930 to 27,828 _00125 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 24.970 kb on - strandat 24.970 kb on - strandat 25.070 kb on - strand, within HUW76_00115at 25.074 kb on - strand, within HUW76_00115at 25.119 kb on - strand, within HUW76_00115at 25.119 kb on - strand, within HUW76_00115at 25.119 kb on - strand, within HUW76_00115at 25.124 kb on - strand, within HUW76_00115at 25.124 kb on - strand, within HUW76_00115at 25.128 kb on - strand, within HUW76_00115at 25.128 kb on - strand, within HUW76_00115at 25.128 kb on - strand, within HUW76_00115at 25.138 kb on - strand, within HUW76_00115at 25.138 kb on - strand, within HUW76_00115at 25.165 kb on - strand, within HUW76_00115at 25.528 kb on - strandat 25.528 kb on - strandat 25.758 kb on + strand, within HUW76_00120at 25.758 kb on + strand, within HUW76_00120at 25.763 kb on + strand, within HUW76_00120at 25.924 kb on + strandat 25.931 kb on - strandat 25.931 kb on - strandat 25.966 kb on - strandat 25.966 kb on - strandat 26.005 kb on + strandat 26.005 kb on + strandat 26.005 kb on + strandat 26.013 kb on - strandat 26.013 kb on - strandat 26.013 kb on - strandat 26.024 kb on + strandat 26.024 kb on + strandat 26.024 kb on + strandat 26.024 kb on + strandat 26.024 kb on + strandat 26.024 kb on + strandat 26.024 kb on + strandat 26.029 kb on + strandat 26.029 kb on + strandat 26.032 kb on - strandat 26.032 kb on - strandat 26.032 kb on - strandat 26.032 kb on - strandat 26.032 kb on - strandat 26.032 kb on - strandat 26.034 kb on + strandat 26.175 kb on + strand, within HUW76_00125at 26.177 kb on + strand, within HUW76_00125at 26.232 kb on - strand, within HUW76_00125at 26.245 kb on + strand, within HUW76_00125at 26.245 kb on + strand, within HUW76_00125at 26.273 kb on + strand, within HUW76_00125at 26.273 kb on + strand, within HUW76_00125at 26.340 kb on - strand, within HUW76_00125at 26.349 kb on - strand, within HUW76_00125at 26.349 kb on - strand, within HUW76_00125at 26.355 kb on + strand, within HUW76_00125at 26.355 kb on + strand, within HUW76_00125at 26.394 kb on - strand, within HUW76_00125at 26.394 kb on - strand, within HUW76_00125at 26.394 kb on - strand, within HUW76_00125at 26.409 kb on - strand, within HUW76_00125at 26.409 kb on - strand, within HUW76_00125at 26.529 kb on - strand, within HUW76_00125at 26.530 kb on - strand, within HUW76_00125at 26.530 kb on - strand, within HUW76_00125at 26.565 kb on + strand, within HUW76_00125at 26.575 kb on - strand, within HUW76_00125at 26.575 kb on - strand, within HUW76_00125at 26.575 kb on - strand, within HUW76_00125at 26.576 kb on - strand, within HUW76_00125at 26.576 kb on - strand, within HUW76_00125at 26.583 kb on - strand, within HUW76_00125at 26.589 kb on + strand, within HUW76_00125at 26.589 kb on + strand, within HUW76_00125at 26.649 kb on + strand, within HUW76_00125at 26.649 kb on + strand, within HUW76_00125at 26.668 kb on - strand, within HUW76_00125at 26.683 kb on - strand, within HUW76_00125at 26.740 kb on + strand, within HUW76_00125at 26.741 kb on + strand, within HUW76_00125at 26.741 kb on + strand, within HUW76_00125at 26.748 kb on - strand, within HUW76_00125at 26.748 kb on - strand, within HUW76_00125at 26.750 kb on + strand, within HUW76_00125

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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24,970 - -1.2
24,970 - -0.5
25,070 - HUW76_00115 0.31 -0.4
25,074 - HUW76_00115 0.33 -0.1
25,119 - HUW76_00115 0.51 -0.8
25,119 - HUW76_00115 0.51 -0.4
25,119 - HUW76_00115 0.51 -0.8
25,124 - HUW76_00115 0.53 -0.6
25,124 - HUW76_00115 0.53 +0.1
25,128 - HUW76_00115 0.55 +0.6
25,128 - HUW76_00115 0.55 +0.0
25,128 - HUW76_00115 0.55 -0.2
25,138 - HUW76_00115 0.59 -1.4
25,138 - HUW76_00115 0.59 -0.0
25,165 - HUW76_00115 0.70 -0.3
25,528 - -0.6
25,528 - -0.4
25,758 + HUW76_00120 0.81 -0.6
25,758 + HUW76_00120 0.81 -0.4
25,763 + HUW76_00120 0.83 +0.1
25,924 + -0.5
25,931 - -1.2
25,931 - -0.3
25,966 - -0.6
25,966 - -0.2
26,005 + +2.6
26,005 + -1.8
26,005 + +0.7
26,013 - -0.1
26,013 - -0.4
26,013 - +0.4
26,024 + +0.1
26,024 + +0.3
26,024 + +0.2
26,024 + +1.4
26,024 + +0.2
26,024 + -0.8
26,024 + -0.1
26,029 + +0.4
26,029 + -0.1
26,032 - -0.2
26,032 - -0.3
26,032 - +0.0
26,032 - -0.2
26,032 - +0.1
26,032 - -0.1
26,034 + +0.2
26,175 + HUW76_00125 0.13 +1.3
26,177 + HUW76_00125 0.13 +0.1
26,232 - HUW76_00125 0.16 -1.0
26,245 + HUW76_00125 0.17 -0.6
26,245 + HUW76_00125 0.17 +1.8
26,273 + HUW76_00125 0.18 +0.6
26,273 + HUW76_00125 0.18 +1.2
26,340 - HUW76_00125 0.22 -0.4
26,349 - HUW76_00125 0.22 -0.8
26,349 - HUW76_00125 0.22 -0.3
26,355 + HUW76_00125 0.22 +0.7
26,355 + HUW76_00125 0.22 +0.4
26,394 - HUW76_00125 0.24 -0.2
26,394 - HUW76_00125 0.24 +0.3
26,394 - HUW76_00125 0.24 -0.2
26,409 - HUW76_00125 0.25 -0.6
26,409 - HUW76_00125 0.25 -0.3
26,529 - HUW76_00125 0.32 -0.3
26,530 - HUW76_00125 0.32 -0.5
26,530 - HUW76_00125 0.32 -0.8
26,565 + HUW76_00125 0.33 -0.2
26,575 - HUW76_00125 0.34 -0.2
26,575 - HUW76_00125 0.34 -1.4
26,575 - HUW76_00125 0.34 -0.2
26,576 - HUW76_00125 0.34 -1.0
26,576 - HUW76_00125 0.34 -0.2
26,583 - HUW76_00125 0.34 +0.4
26,589 + HUW76_00125 0.35 +1.5
26,589 + HUW76_00125 0.35 +0.2
26,649 + HUW76_00125 0.38 +2.0
26,649 + HUW76_00125 0.38 +0.5
26,668 - HUW76_00125 0.39 -0.4
26,683 - HUW76_00125 0.40 -0.6
26,740 + HUW76_00125 0.43 +0.1
26,741 + HUW76_00125 0.43 +1.0
26,741 + HUW76_00125 0.43 +0.3
26,748 - HUW76_00125 0.43 -0.3
26,748 - HUW76_00125 0.43 +0.1
26,750 + HUW76_00125 0.43 -0.0

Or see this region's nucleotide sequence