Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_07925

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_07910 and HUW76_07915 are separated by 25 nucleotidesHUW76_07915 and HUW76_07920 are separated by 127 nucleotidesHUW76_07920 and HUW76_07925 are separated by 8 nucleotidesHUW76_07925 and HUW76_07930 are separated by 60 nucleotidesHUW76_07930 and HUW76_07935 are separated by 215 nucleotides HUW76_07910: HUW76_07910 - hypothetical protein, at 1,649,873 to 1,650,463 _07910 HUW76_07915: HUW76_07915 - hypothetical protein, at 1,650,489 to 1,650,716 _07915 HUW76_07920: HUW76_07920 - tRNA-Leu, at 1,650,844 to 1,650,930 _07920 HUW76_07925: HUW76_07925 - tRNA-Arg, at 1,650,939 to 1,651,015 _07925 HUW76_07930: HUW76_07930 - tRNA-Arg, at 1,651,076 to 1,651,152 _07930 HUW76_07935: HUW76_07935 - LamB/YcsF family protein, at 1,651,368 to 1,652,141 _07935 Position (kb) 1650 1651 1652Strain fitness (log2 ratio) -1 0 1 2 3 4at 1650.046 kb on - strand, within HUW76_07910at 1650.046 kb on - strand, within HUW76_07910at 1650.066 kb on - strand, within HUW76_07910at 1650.066 kb on - strand, within HUW76_07910at 1650.096 kb on + strand, within HUW76_07910at 1650.104 kb on - strand, within HUW76_07910at 1650.217 kb on - strand, within HUW76_07910at 1650.312 kb on + strand, within HUW76_07910at 1650.541 kb on - strand, within HUW76_07915at 1650.541 kb on - strand, within HUW76_07915at 1650.661 kb on - strand, within HUW76_07915at 1650.661 kb on - strand, within HUW76_07915at 1650.678 kb on - strand, within HUW76_07915at 1650.728 kb on - strandat 1650.728 kb on - strandat 1650.741 kb on + strandat 1650.741 kb on + strandat 1650.747 kb on - strandat 1650.747 kb on - strandat 1650.749 kb on - strandat 1650.749 kb on - strandat 1650.847 kb on + strandat 1650.860 kb on + strand, within HUW76_07920at 1650.916 kb on + strand, within HUW76_07920at 1651.076 kb on + strandat 1651.076 kb on + strandat 1651.085 kb on + strand, within HUW76_07930at 1651.085 kb on + strand, within HUW76_07930at 1651.085 kb on + strand, within HUW76_07930at 1651.085 kb on + strand, within HUW76_07930at 1651.085 kb on + strand, within HUW76_07930at 1651.085 kb on + strand, within HUW76_07930at 1651.085 kb on + strand, within HUW76_07930at 1651.085 kb on + strand, within HUW76_07930at 1651.091 kb on + strand, within HUW76_07930at 1651.091 kb on + strand, within HUW76_07930at 1651.091 kb on - strand, within HUW76_07930at 1651.099 kb on - strand, within HUW76_07930at 1651.099 kb on - strand, within HUW76_07930at 1651.099 kb on - strand, within HUW76_07930at 1651.107 kb on + strand, within HUW76_07930at 1651.107 kb on + strand, within HUW76_07930at 1651.115 kb on - strand, within HUW76_07930at 1651.125 kb on - strand, within HUW76_07930at 1651.127 kb on + strand, within HUW76_07930at 1651.135 kb on - strand, within HUW76_07930at 1651.141 kb on + strand, within HUW76_07930at 1651.141 kb on + strand, within HUW76_07930at 1651.142 kb on + strand, within HUW76_07930at 1651.145 kb on - strandat 1651.149 kb on - strandat 1651.406 kb on + strandat 1651.406 kb on + strandat 1651.406 kb on + strandat 1651.406 kb on + strandat 1651.406 kb on + strandat 1651.407 kb on + strandat 1651.407 kb on + strandat 1651.414 kb on - strandat 1651.414 kb on - strandat 1651.416 kb on - strandat 1651.461 kb on + strand, within HUW76_07935at 1651.462 kb on + strand, within HUW76_07935at 1651.489 kb on + strand, within HUW76_07935at 1651.489 kb on + strand, within HUW76_07935at 1651.570 kb on - strand, within HUW76_07935at 1651.625 kb on + strand, within HUW76_07935at 1651.626 kb on + strand, within HUW76_07935at 1651.626 kb on + strand, within HUW76_07935at 1651.626 kb on + strand, within HUW76_07935at 1651.626 kb on + strand, within HUW76_07935at 1651.740 kb on + strand, within HUW76_07935at 1651.740 kb on + strand, within HUW76_07935at 1651.755 kb on + strand, within HUW76_07935at 1651.785 kb on + strand, within HUW76_07935at 1651.785 kb on + strand, within HUW76_07935at 1651.786 kb on + strand, within HUW76_07935at 1651.822 kb on - strand, within HUW76_07935at 1651.878 kb on + strand, within HUW76_07935at 1651.878 kb on + strand, within HUW76_07935at 1651.880 kb on + strand, within HUW76_07935at 1651.880 kb on + strand, within HUW76_07935at 1651.880 kb on + strand, within HUW76_07935at 1651.880 kb on + strand, within HUW76_07935at 1651.880 kb on + strand, within HUW76_07935at 1651.880 kb on + strand, within HUW76_07935at 1651.880 kb on + strand, within HUW76_07935at 1651.888 kb on - strand, within HUW76_07935at 1651.888 kb on - strand, within HUW76_07935at 1651.911 kb on + strand, within HUW76_07935at 1651.911 kb on + strand, within HUW76_07935at 1651.936 kb on + strand, within HUW76_07935at 1651.941 kb on + strand, within HUW76_07935at 1651.941 kb on + strand, within HUW76_07935at 1651.944 kb on - strand, within HUW76_07935at 1651.944 kb on - strand, within HUW76_07935at 1651.978 kb on - strand, within HUW76_07935at 1651.978 kb on - strand, within HUW76_07935at 1651.993 kb on - strand, within HUW76_07935at 1651.993 kb on - strand, within HUW76_07935at 1651.993 kb on - strand, within HUW76_07935

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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1,650,046 - HUW76_07910 0.29 +0.0
1,650,046 - HUW76_07910 0.29 -1.1
1,650,066 - HUW76_07910 0.33 -0.4
1,650,066 - HUW76_07910 0.33 -0.1
1,650,096 + HUW76_07910 0.38 +1.6
1,650,104 - HUW76_07910 0.39 +0.0
1,650,217 - HUW76_07910 0.58 -0.7
1,650,312 + HUW76_07910 0.74 +1.2
1,650,541 - HUW76_07915 0.23 -0.9
1,650,541 - HUW76_07915 0.23 +0.8
1,650,661 - HUW76_07915 0.75 +0.1
1,650,661 - HUW76_07915 0.75 -0.1
1,650,678 - HUW76_07915 0.83 -0.4
1,650,728 - -0.3
1,650,728 - -0.4
1,650,741 + +0.1
1,650,741 + +0.6
1,650,747 - +0.8
1,650,747 - +2.0
1,650,749 - +0.1
1,650,749 - -0.1
1,650,847 + -0.0
1,650,860 + HUW76_07920 0.18 +0.0
1,650,916 + HUW76_07920 0.83 +3.0
1,651,076 + +0.3
1,651,076 + +0.6
1,651,085 + HUW76_07930 0.12 +1.9
1,651,085 + HUW76_07930 0.12 +1.3
1,651,085 + HUW76_07930 0.12 +2.1
1,651,085 + HUW76_07930 0.12 +0.8
1,651,085 + HUW76_07930 0.12 +1.2
1,651,085 + HUW76_07930 0.12 +2.7
1,651,085 + HUW76_07930 0.12 +1.9
1,651,085 + HUW76_07930 0.12 +1.0
1,651,091 + HUW76_07930 0.19 +1.3
1,651,091 + HUW76_07930 0.19 +2.5
1,651,091 - HUW76_07930 0.19 -0.3
1,651,099 - HUW76_07930 0.30 +1.6
1,651,099 - HUW76_07930 0.30 -0.6
1,651,099 - HUW76_07930 0.30 -0.8
1,651,107 + HUW76_07930 0.40 +1.8
1,651,107 + HUW76_07930 0.40 +2.3
1,651,115 - HUW76_07930 0.51 -0.1
1,651,125 - HUW76_07930 0.64 +0.4
1,651,127 + HUW76_07930 0.66 +1.5
1,651,135 - HUW76_07930 0.77 +0.1
1,651,141 + HUW76_07930 0.84 +2.7
1,651,141 + HUW76_07930 0.84 +1.3
1,651,142 + HUW76_07930 0.86 +1.5
1,651,145 - -0.4
1,651,149 - +0.3
1,651,406 + -0.5
1,651,406 + -0.1
1,651,406 + +1.0
1,651,406 + +0.8
1,651,406 + +0.4
1,651,407 + -0.1
1,651,407 + -0.7
1,651,414 - +1.9
1,651,414 - -0.2
1,651,416 - +4.3
1,651,461 + HUW76_07935 0.12 -0.7
1,651,462 + HUW76_07935 0.12 +0.2
1,651,489 + HUW76_07935 0.16 +0.1
1,651,489 + HUW76_07935 0.16 +0.1
1,651,570 - HUW76_07935 0.26 +0.7
1,651,625 + HUW76_07935 0.33 +0.2
1,651,626 + HUW76_07935 0.33 -0.7
1,651,626 + HUW76_07935 0.33 +0.2
1,651,626 + HUW76_07935 0.33 +0.8
1,651,626 + HUW76_07935 0.33 +0.2
1,651,740 + HUW76_07935 0.48 -0.5
1,651,740 + HUW76_07935 0.48 -0.9
1,651,755 + HUW76_07935 0.50 -0.7
1,651,785 + HUW76_07935 0.54 +1.1
1,651,785 + HUW76_07935 0.54 +0.4
1,651,786 + HUW76_07935 0.54 -0.2
1,651,822 - HUW76_07935 0.59 +1.3
1,651,878 + HUW76_07935 0.66 -0.7
1,651,878 + HUW76_07935 0.66 -0.5
1,651,880 + HUW76_07935 0.66 -0.9
1,651,880 + HUW76_07935 0.66 +1.8
1,651,880 + HUW76_07935 0.66 -0.8
1,651,880 + HUW76_07935 0.66 -0.1
1,651,880 + HUW76_07935 0.66 +0.2
1,651,880 + HUW76_07935 0.66 +0.9
1,651,880 + HUW76_07935 0.66 +0.4
1,651,888 - HUW76_07935 0.67 +1.5
1,651,888 - HUW76_07935 0.67 +0.5
1,651,911 + HUW76_07935 0.70 +1.8
1,651,911 + HUW76_07935 0.70 +0.7
1,651,936 + HUW76_07935 0.73 +0.3
1,651,941 + HUW76_07935 0.74 +0.1
1,651,941 + HUW76_07935 0.74 -0.0
1,651,944 - HUW76_07935 0.74 +0.8
1,651,944 - HUW76_07935 0.74 +1.6
1,651,978 - HUW76_07935 0.79 +0.3
1,651,978 - HUW76_07935 0.79 +1.3
1,651,993 - HUW76_07935 0.81 +0.2
1,651,993 - HUW76_07935 0.81 +0.6
1,651,993 - HUW76_07935 0.81 +1.1

Or see this region's nucleotide sequence