Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_06190

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_06185 and HUW76_06190 are separated by 18 nucleotidesHUW76_06190 and HUW76_06195 are separated by 23 nucleotidesHUW76_06195 and HUW76_06200 are separated by 22 nucleotides HUW76_06185: HUW76_06185 - toxin-antitoxin system YwqK family antitoxin, at 1,271,610 to 1,272,575 _06185 HUW76_06190: HUW76_06190 - transporter, at 1,272,594 to 1,273,520 _06190 HUW76_06195: HUW76_06195 - CPBP family intramembrane metalloprotease, at 1,273,544 to 1,274,431 _06195 HUW76_06200: HUW76_06200 - methyltransferase domain-containing protein, at 1,274,454 to 1,275,089 _06200 Position (kb) 1272 1273 1274Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1271.680 kb on + strandat 1271.680 kb on + strandat 1271.682 kb on - strandat 1271.855 kb on + strand, within HUW76_06185at 1271.855 kb on + strand, within HUW76_06185at 1271.863 kb on - strand, within HUW76_06185at 1271.863 kb on - strand, within HUW76_06185at 1271.904 kb on + strand, within HUW76_06185at 1271.908 kb on + strand, within HUW76_06185at 1271.908 kb on + strand, within HUW76_06185at 1271.909 kb on + strand, within HUW76_06185at 1271.909 kb on + strand, within HUW76_06185at 1271.916 kb on - strand, within HUW76_06185at 1271.916 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.917 kb on - strand, within HUW76_06185at 1271.963 kb on - strand, within HUW76_06185at 1271.963 kb on - strand, within HUW76_06185at 1272.199 kb on - strand, within HUW76_06185at 1272.199 kb on - strand, within HUW76_06185at 1272.458 kb on + strand, within HUW76_06185at 1272.458 kb on + strand, within HUW76_06185at 1272.460 kb on + strand, within HUW76_06185at 1272.482 kb on - strandat 1272.482 kb on - strandat 1272.548 kb on - strandat 1272.590 kb on + strandat 1272.598 kb on - strandat 1272.665 kb on - strandat 1272.665 kb on - strandat 1272.711 kb on - strand, within HUW76_06190at 1272.711 kb on - strand, within HUW76_06190at 1272.791 kb on - strand, within HUW76_06190at 1272.791 kb on - strand, within HUW76_06190at 1272.832 kb on + strand, within HUW76_06190at 1272.872 kb on + strand, within HUW76_06190at 1272.872 kb on + strand, within HUW76_06190at 1272.927 kb on + strand, within HUW76_06190at 1273.168 kb on - strand, within HUW76_06190at 1273.168 kb on - strand, within HUW76_06190at 1273.187 kb on + strand, within HUW76_06190at 1273.187 kb on + strand, within HUW76_06190at 1273.214 kb on + strand, within HUW76_06190at 1273.232 kb on - strand, within HUW76_06190at 1273.232 kb on - strand, within HUW76_06190at 1273.255 kb on + strand, within HUW76_06190at 1273.271 kb on + strand, within HUW76_06190at 1273.271 kb on + strand, within HUW76_06190at 1273.282 kb on - strand, within HUW76_06190at 1273.282 kb on - strand, within HUW76_06190at 1273.303 kb on - strand, within HUW76_06190at 1273.303 kb on - strand, within HUW76_06190at 1273.303 kb on - strand, within HUW76_06190at 1273.303 kb on - strand, within HUW76_06190at 1273.440 kb on + strandat 1273.440 kb on + strandat 1273.440 kb on + strandat 1273.440 kb on + strandat 1273.441 kb on - strandat 1273.448 kb on - strandat 1273.448 kb on - strandat 1273.448 kb on - strandat 1273.448 kb on - strandat 1273.448 kb on - strandat 1273.500 kb on + strandat 1273.639 kb on + strand, within HUW76_06195at 1273.647 kb on - strand, within HUW76_06195at 1273.662 kb on - strand, within HUW76_06195at 1273.662 kb on - strand, within HUW76_06195at 1273.671 kb on + strand, within HUW76_06195at 1273.671 kb on + strand, within HUW76_06195at 1273.706 kb on + strand, within HUW76_06195at 1273.706 kb on + strand, within HUW76_06195at 1273.713 kb on - strand, within HUW76_06195at 1273.768 kb on - strand, within HUW76_06195at 1273.772 kb on + strand, within HUW76_06195at 1273.782 kb on + strand, within HUW76_06195at 1273.782 kb on - strand, within HUW76_06195at 1273.782 kb on - strand, within HUW76_06195at 1273.782 kb on - strand, within HUW76_06195at 1273.782 kb on - strand, within HUW76_06195at 1273.803 kb on + strand, within HUW76_06195at 1273.803 kb on + strand, within HUW76_06195at 1273.811 kb on - strand, within HUW76_06195at 1273.813 kb on + strand, within HUW76_06195at 1273.813 kb on + strand, within HUW76_06195at 1273.813 kb on + strand, within HUW76_06195at 1273.821 kb on - strand, within HUW76_06195at 1273.821 kb on - strand, within HUW76_06195at 1273.821 kb on - strand, within HUW76_06195at 1273.821 kb on - strand, within HUW76_06195at 1273.821 kb on - strand, within HUW76_06195at 1273.821 kb on - strand, within HUW76_06195at 1273.825 kb on + strand, within HUW76_06195at 1273.831 kb on - strand, within HUW76_06195at 1273.831 kb on - strand, within HUW76_06195at 1273.831 kb on - strand, within HUW76_06195at 1273.857 kb on + strand, within HUW76_06195at 1273.877 kb on - strand, within HUW76_06195at 1273.877 kb on - strand, within HUW76_06195at 1273.943 kb on - strand, within HUW76_06195at 1273.943 kb on - strand, within HUW76_06195at 1274.098 kb on + strand, within HUW76_06195at 1274.115 kb on + strand, within HUW76_06195at 1274.115 kb on + strand, within HUW76_06195at 1274.242 kb on - strand, within HUW76_06195at 1274.242 kb on - strand, within HUW76_06195at 1274.324 kb on - strand, within HUW76_06195at 1274.404 kb on + strandat 1274.479 kb on + strandat 1274.479 kb on + strandat 1274.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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1,271,680 + +0.3
1,271,680 + +0.0
1,271,682 - -0.3
1,271,855 + HUW76_06185 0.25 +1.7
1,271,855 + HUW76_06185 0.25 +1.8
1,271,863 - HUW76_06185 0.26 -0.4
1,271,863 - HUW76_06185 0.26 +0.1
1,271,904 + HUW76_06185 0.30 +1.1
1,271,908 + HUW76_06185 0.31 +0.3
1,271,908 + HUW76_06185 0.31 -0.2
1,271,909 + HUW76_06185 0.31 -0.4
1,271,909 + HUW76_06185 0.31 +1.0
1,271,916 - HUW76_06185 0.32 -0.1
1,271,916 - HUW76_06185 0.32 -0.9
1,271,917 - HUW76_06185 0.32 -0.7
1,271,917 - HUW76_06185 0.32 -0.4
1,271,917 - HUW76_06185 0.32 +0.3
1,271,917 - HUW76_06185 0.32 -0.5
1,271,917 - HUW76_06185 0.32 -0.5
1,271,917 - HUW76_06185 0.32 +0.0
1,271,917 - HUW76_06185 0.32 -0.6
1,271,917 - HUW76_06185 0.32 -0.9
1,271,917 - HUW76_06185 0.32 +0.1
1,271,917 - HUW76_06185 0.32 +0.2
1,271,917 - HUW76_06185 0.32 -0.8
1,271,963 - HUW76_06185 0.37 +1.4
1,271,963 - HUW76_06185 0.37 -1.7
1,272,199 - HUW76_06185 0.61 +0.0
1,272,199 - HUW76_06185 0.61 -0.5
1,272,458 + HUW76_06185 0.88 +0.5
1,272,458 + HUW76_06185 0.88 +0.4
1,272,460 + HUW76_06185 0.88 +0.8
1,272,482 - +0.4
1,272,482 - -0.1
1,272,548 - -0.7
1,272,590 + -0.5
1,272,598 - +0.9
1,272,665 - -1.4
1,272,665 - -0.7
1,272,711 - HUW76_06190 0.13 -0.6
1,272,711 - HUW76_06190 0.13 -0.7
1,272,791 - HUW76_06190 0.21 -0.7
1,272,791 - HUW76_06190 0.21 -2.4
1,272,832 + HUW76_06190 0.26 +1.6
1,272,872 + HUW76_06190 0.30 +1.4
1,272,872 + HUW76_06190 0.30 -0.5
1,272,927 + HUW76_06190 0.36 +1.9
1,273,168 - HUW76_06190 0.62 +0.1
1,273,168 - HUW76_06190 0.62 -0.4
1,273,187 + HUW76_06190 0.64 +0.9
1,273,187 + HUW76_06190 0.64 +0.2
1,273,214 + HUW76_06190 0.67 +0.8
1,273,232 - HUW76_06190 0.69 -0.0
1,273,232 - HUW76_06190 0.69 -0.4
1,273,255 + HUW76_06190 0.71 +0.7
1,273,271 + HUW76_06190 0.73 +1.4
1,273,271 + HUW76_06190 0.73 +1.9
1,273,282 - HUW76_06190 0.74 -0.2
1,273,282 - HUW76_06190 0.74 +0.2
1,273,303 - HUW76_06190 0.76 -0.8
1,273,303 - HUW76_06190 0.76 -0.5
1,273,303 - HUW76_06190 0.76 -0.7
1,273,303 - HUW76_06190 0.76 -0.1
1,273,440 + +0.2
1,273,440 + +2.6
1,273,440 + +1.2
1,273,440 + +0.6
1,273,441 - -0.2
1,273,448 - +1.2
1,273,448 - -0.3
1,273,448 - +0.0
1,273,448 - -1.7
1,273,448 - -1.3
1,273,500 + +0.7
1,273,639 + HUW76_06195 0.11 -0.1
1,273,647 - HUW76_06195 0.12 +0.2
1,273,662 - HUW76_06195 0.13 +2.3
1,273,662 - HUW76_06195 0.13 -0.8
1,273,671 + HUW76_06195 0.14 +1.0
1,273,671 + HUW76_06195 0.14 +2.7
1,273,706 + HUW76_06195 0.18 +0.1
1,273,706 + HUW76_06195 0.18 +1.0
1,273,713 - HUW76_06195 0.19 -0.6
1,273,768 - HUW76_06195 0.25 +0.2
1,273,772 + HUW76_06195 0.26 +1.5
1,273,782 + HUW76_06195 0.27 +0.5
1,273,782 - HUW76_06195 0.27 +0.4
1,273,782 - HUW76_06195 0.27 +0.5
1,273,782 - HUW76_06195 0.27 +0.1
1,273,782 - HUW76_06195 0.27 +0.0
1,273,803 + HUW76_06195 0.29 +1.5
1,273,803 + HUW76_06195 0.29 +2.9
1,273,811 - HUW76_06195 0.30 -0.3
1,273,813 + HUW76_06195 0.30 +2.3
1,273,813 + HUW76_06195 0.30 +1.9
1,273,813 + HUW76_06195 0.30 +2.7
1,273,821 - HUW76_06195 0.31 +0.5
1,273,821 - HUW76_06195 0.31 -1.0
1,273,821 - HUW76_06195 0.31 -0.6
1,273,821 - HUW76_06195 0.31 -0.9
1,273,821 - HUW76_06195 0.31 +1.5
1,273,821 - HUW76_06195 0.31 -1.0
1,273,825 + HUW76_06195 0.32 +5.1
1,273,831 - HUW76_06195 0.32 +0.1
1,273,831 - HUW76_06195 0.32 +0.1
1,273,831 - HUW76_06195 0.32 -0.2
1,273,857 + HUW76_06195 0.35 -0.3
1,273,877 - HUW76_06195 0.38 +0.4
1,273,877 - HUW76_06195 0.38 +0.3
1,273,943 - HUW76_06195 0.45 +0.3
1,273,943 - HUW76_06195 0.45 +0.1
1,274,098 + HUW76_06195 0.62 +1.3
1,274,115 + HUW76_06195 0.64 -0.2
1,274,115 + HUW76_06195 0.64 +1.9
1,274,242 - HUW76_06195 0.79 +0.7
1,274,242 - HUW76_06195 0.79 +0.6
1,274,324 - HUW76_06195 0.88 +0.0
1,274,404 + +1.9
1,274,479 + +0.3
1,274,479 + +0.5
1,274,479 + -2.1

Or see this region's nucleotide sequence