Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_05965

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_05955 and HUW76_05960 are separated by 183 nucleotidesHUW76_05960 and HUW76_05965 are separated by 184 nucleotidesHUW76_05965 and HUW76_05970 are separated by 77 nucleotidesHUW76_05970 and HUW76_05975 are separated by 15 nucleotides HUW76_05955: HUW76_05955 - RNA methyltransferase, at 1,217,260 to 1,218,031 _05955 HUW76_05960: HUW76_05960 - hypothetical protein, at 1,218,215 to 1,218,484 _05960 HUW76_05965: HUW76_05965 - DUF1643 domain-containing protein, at 1,218,669 to 1,219,967 _05965 HUW76_05970: HUW76_05970 - ABC-2 family transporter protein, at 1,220,045 to 1,220,830 _05970 HUW76_05975: HUW76_05975 - ATP-binding cassette domain-containing protein, at 1,220,846 to 1,221,862 _05975 Position (kb) 1218 1219 1220Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1217.682 kb on + strand, within HUW76_05955at 1217.682 kb on + strand, within HUW76_05955at 1217.682 kb on + strand, within HUW76_05955at 1217.690 kb on - strand, within HUW76_05955at 1217.690 kb on - strand, within HUW76_05955at 1217.780 kb on - strand, within HUW76_05955at 1217.782 kb on - strand, within HUW76_05955at 1217.786 kb on + strand, within HUW76_05955at 1217.869 kb on + strand, within HUW76_05955at 1217.875 kb on + strand, within HUW76_05955at 1217.917 kb on - strand, within HUW76_05955at 1217.917 kb on - strand, within HUW76_05955at 1217.958 kb on + strandat 1217.958 kb on + strandat 1218.041 kb on - strandat 1218.163 kb on + strandat 1218.171 kb on - strandat 1218.181 kb on - strandat 1218.181 kb on - strandat 1218.193 kb on - strandat 1218.220 kb on - strandat 1218.220 kb on - strandat 1218.267 kb on - strand, within HUW76_05960at 1218.267 kb on - strand, within HUW76_05960at 1218.298 kb on + strand, within HUW76_05960at 1218.329 kb on - strand, within HUW76_05960at 1218.329 kb on - strand, within HUW76_05960at 1218.415 kb on + strand, within HUW76_05960at 1218.423 kb on - strand, within HUW76_05960at 1218.457 kb on + strand, within HUW76_05960at 1218.457 kb on + strand, within HUW76_05960at 1218.643 kb on - strandat 1218.661 kb on + strandat 1218.661 kb on + strandat 1218.669 kb on - strandat 1218.875 kb on - strand, within HUW76_05965at 1218.875 kb on - strand, within HUW76_05965at 1218.935 kb on - strand, within HUW76_05965at 1219.028 kb on + strand, within HUW76_05965at 1219.041 kb on - strand, within HUW76_05965at 1219.041 kb on - strand, within HUW76_05965at 1219.041 kb on - strand, within HUW76_05965at 1219.071 kb on - strand, within HUW76_05965at 1219.079 kb on - strand, within HUW76_05965at 1219.079 kb on - strand, within HUW76_05965at 1219.160 kb on + strand, within HUW76_05965at 1219.242 kb on + strand, within HUW76_05965at 1219.250 kb on - strand, within HUW76_05965at 1219.250 kb on - strand, within HUW76_05965at 1219.250 kb on - strand, within HUW76_05965at 1219.254 kb on + strand, within HUW76_05965at 1219.262 kb on - strand, within HUW76_05965at 1219.262 kb on - strand, within HUW76_05965at 1219.313 kb on + strand, within HUW76_05965at 1219.313 kb on + strand, within HUW76_05965at 1219.331 kb on - strand, within HUW76_05965at 1219.331 kb on - strand, within HUW76_05965at 1219.347 kb on - strand, within HUW76_05965at 1219.517 kb on + strand, within HUW76_05965at 1219.525 kb on - strand, within HUW76_05965at 1219.525 kb on - strand, within HUW76_05965at 1219.606 kb on - strand, within HUW76_05965at 1219.658 kb on - strand, within HUW76_05965at 1219.674 kb on + strand, within HUW76_05965at 1219.682 kb on - strand, within HUW76_05965at 1219.692 kb on - strand, within HUW76_05965at 1219.736 kb on - strand, within HUW76_05965at 1219.769 kb on + strand, within HUW76_05965at 1219.769 kb on + strand, within HUW76_05965at 1219.769 kb on + strand, within HUW76_05965at 1219.769 kb on + strand, within HUW76_05965at 1219.771 kb on + strand, within HUW76_05965at 1219.777 kb on - strand, within HUW76_05965at 1219.777 kb on - strand, within HUW76_05965at 1219.777 kb on - strand, within HUW76_05965at 1219.777 kb on - strand, within HUW76_05965at 1219.798 kb on - strand, within HUW76_05965at 1219.798 kb on - strand, within HUW76_05965at 1220.051 kb on + strandat 1220.188 kb on - strand, within HUW76_05970at 1220.188 kb on - strand, within HUW76_05970at 1220.199 kb on - strand, within HUW76_05970at 1220.199 kb on - strand, within HUW76_05970at 1220.260 kb on - strand, within HUW76_05970at 1220.260 kb on - strand, within HUW76_05970at 1220.307 kb on + strand, within HUW76_05970at 1220.307 kb on + strand, within HUW76_05970at 1220.427 kb on + strand, within HUW76_05970at 1220.486 kb on + strand, within HUW76_05970at 1220.486 kb on + strand, within HUW76_05970at 1220.494 kb on - strand, within HUW76_05970at 1220.494 kb on - strand, within HUW76_05970at 1220.547 kb on + strand, within HUW76_05970at 1220.584 kb on + strand, within HUW76_05970at 1220.584 kb on + strand, within HUW76_05970at 1220.586 kb on - strand, within HUW76_05970at 1220.586 kb on - strand, within HUW76_05970at 1220.592 kb on - strand, within HUW76_05970at 1220.592 kb on - strand, within HUW76_05970at 1220.592 kb on - strand, within HUW76_05970at 1220.592 kb on - strand, within HUW76_05970at 1220.712 kb on - strand, within HUW76_05970at 1220.712 kb on - strand, within HUW76_05970at 1220.716 kb on + strand, within HUW76_05970at 1220.722 kb on - strand, within HUW76_05970at 1220.724 kb on - strand, within HUW76_05970at 1220.724 kb on - strand, within HUW76_05970at 1220.724 kb on - strand, within HUW76_05970at 1220.800 kb on - strandat 1220.800 kb on - strandat 1220.844 kb on + strandat 1220.851 kb on - strandat 1220.852 kb on - strandat 1220.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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1,217,682 + HUW76_05955 0.55 -0.4
1,217,682 + HUW76_05955 0.55 +0.6
1,217,682 + HUW76_05955 0.55 +1.3
1,217,690 - HUW76_05955 0.56 +0.0
1,217,690 - HUW76_05955 0.56 +0.1
1,217,780 - HUW76_05955 0.67 +0.5
1,217,782 - HUW76_05955 0.68 +0.5
1,217,786 + HUW76_05955 0.68 +0.9
1,217,869 + HUW76_05955 0.79 +0.3
1,217,875 + HUW76_05955 0.80 +0.6
1,217,917 - HUW76_05955 0.85 +0.2
1,217,917 - HUW76_05955 0.85 +0.2
1,217,958 + +0.2
1,217,958 + +1.1
1,218,041 - +0.2
1,218,163 + +0.6
1,218,171 - -0.0
1,218,181 - -0.5
1,218,181 - -0.5
1,218,193 - -1.1
1,218,220 - +0.7
1,218,220 - +1.2
1,218,267 - HUW76_05960 0.19 -0.1
1,218,267 - HUW76_05960 0.19 +0.4
1,218,298 + HUW76_05960 0.31 +0.4
1,218,329 - HUW76_05960 0.42 -1.0
1,218,329 - HUW76_05960 0.42 -0.4
1,218,415 + HUW76_05960 0.74 +1.2
1,218,423 - HUW76_05960 0.77 -0.4
1,218,457 + HUW76_05960 0.90 +0.2
1,218,457 + HUW76_05960 0.90 +0.2
1,218,643 - -0.3
1,218,661 + -1.1
1,218,661 + +1.8
1,218,669 - +0.1
1,218,875 - HUW76_05965 0.16 -0.8
1,218,875 - HUW76_05965 0.16 -1.8
1,218,935 - HUW76_05965 0.20 -0.4
1,219,028 + HUW76_05965 0.28 +2.9
1,219,041 - HUW76_05965 0.29 +0.6
1,219,041 - HUW76_05965 0.29 -0.5
1,219,041 - HUW76_05965 0.29 -0.2
1,219,071 - HUW76_05965 0.31 -0.5
1,219,079 - HUW76_05965 0.32 -0.5
1,219,079 - HUW76_05965 0.32 +0.1
1,219,160 + HUW76_05965 0.38 +0.6
1,219,242 + HUW76_05965 0.44 +0.3
1,219,250 - HUW76_05965 0.45 +0.3
1,219,250 - HUW76_05965 0.45 +0.1
1,219,250 - HUW76_05965 0.45 +0.5
1,219,254 + HUW76_05965 0.45 +0.2
1,219,262 - HUW76_05965 0.46 +0.4
1,219,262 - HUW76_05965 0.46 +0.2
1,219,313 + HUW76_05965 0.50 +1.1
1,219,313 + HUW76_05965 0.50 +0.1
1,219,331 - HUW76_05965 0.51 -1.3
1,219,331 - HUW76_05965 0.51 -0.1
1,219,347 - HUW76_05965 0.52 -0.5
1,219,517 + HUW76_05965 0.65 +2.6
1,219,525 - HUW76_05965 0.66 +0.2
1,219,525 - HUW76_05965 0.66 -0.7
1,219,606 - HUW76_05965 0.72 -0.9
1,219,658 - HUW76_05965 0.76 -0.2
1,219,674 + HUW76_05965 0.77 -0.3
1,219,682 - HUW76_05965 0.78 -0.7
1,219,692 - HUW76_05965 0.79 +0.1
1,219,736 - HUW76_05965 0.82 -0.3
1,219,769 + HUW76_05965 0.85 +2.8
1,219,769 + HUW76_05965 0.85 +1.4
1,219,769 + HUW76_05965 0.85 +1.7
1,219,769 + HUW76_05965 0.85 +1.7
1,219,771 + HUW76_05965 0.85 +1.6
1,219,777 - HUW76_05965 0.85 +0.2
1,219,777 - HUW76_05965 0.85 -0.2
1,219,777 - HUW76_05965 0.85 -1.3
1,219,777 - HUW76_05965 0.85 -0.5
1,219,798 - HUW76_05965 0.87 -0.2
1,219,798 - HUW76_05965 0.87 +0.0
1,220,051 + +0.7
1,220,188 - HUW76_05970 0.18 -0.0
1,220,188 - HUW76_05970 0.18 -0.1
1,220,199 - HUW76_05970 0.20 -0.5
1,220,199 - HUW76_05970 0.20 +0.4
1,220,260 - HUW76_05970 0.27 -1.1
1,220,260 - HUW76_05970 0.27 +0.8
1,220,307 + HUW76_05970 0.33 +0.6
1,220,307 + HUW76_05970 0.33 +1.4
1,220,427 + HUW76_05970 0.49 +0.8
1,220,486 + HUW76_05970 0.56 +1.9
1,220,486 + HUW76_05970 0.56 +1.6
1,220,494 - HUW76_05970 0.57 +0.4
1,220,494 - HUW76_05970 0.57 +0.2
1,220,547 + HUW76_05970 0.64 +1.0
1,220,584 + HUW76_05970 0.69 +1.3
1,220,584 + HUW76_05970 0.69 +3.0
1,220,586 - HUW76_05970 0.69 -1.2
1,220,586 - HUW76_05970 0.69 -0.8
1,220,592 - HUW76_05970 0.70 -0.3
1,220,592 - HUW76_05970 0.70 -0.9
1,220,592 - HUW76_05970 0.70 -0.4
1,220,592 - HUW76_05970 0.70 -0.4
1,220,712 - HUW76_05970 0.85 -0.3
1,220,712 - HUW76_05970 0.85 -0.2
1,220,716 + HUW76_05970 0.85 +0.4
1,220,722 - HUW76_05970 0.86 -0.3
1,220,724 - HUW76_05970 0.86 +0.0
1,220,724 - HUW76_05970 0.86 -0.9
1,220,724 - HUW76_05970 0.86 -0.1
1,220,800 - +0.7
1,220,800 - +1.1
1,220,844 + +1.7
1,220,851 - -0.2
1,220,852 - -0.4
1,220,852 - -0.4

Or see this region's nucleotide sequence