Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04565

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04555 and HUW76_04560 are separated by 300 nucleotidesHUW76_04560 and HUW76_04565 are separated by 21 nucleotidesHUW76_04565 and HUW76_04570 are separated by 16 nucleotides HUW76_04555: HUW76_04555 - glutamate formimidoyltransferase, at 916,175 to 917,140 _04555 HUW76_04560: HUW76_04560 - DUF1456 family protein, at 917,441 to 917,911 _04560 HUW76_04565: HUW76_04565 - ATP-dependent DNA helicase, at 917,933 to 920,395 _04565 HUW76_04570: HUW76_04570 - HD family phosphohydrolase, at 920,412 to 922,484 _04570 Position (kb) 917 918 919 920 921Strain fitness (log2 ratio) -2 -1 0 1 2 3at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.990 kb on + strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.996 kb on + strand, within HUW76_04555at 917.006 kb on + strand, within HUW76_04555at 917.006 kb on + strand, within HUW76_04555at 917.014 kb on - strand, within HUW76_04555at 917.014 kb on - strand, within HUW76_04555at 917.065 kb on + strandat 917.093 kb on + strandat 917.093 kb on + strandat 917.093 kb on + strandat 917.093 kb on + strandat 917.095 kb on + strandat 917.101 kb on - strandat 917.101 kb on - strandat 917.106 kb on + strandat 917.123 kb on - strandat 917.285 kb on - strandat 917.325 kb on + strandat 917.326 kb on + strandat 917.326 kb on + strandat 917.417 kb on + strandat 917.709 kb on + strand, within HUW76_04560at 917.929 kb on + strandat 917.929 kb on + strandat 918.088 kb on - strandat 918.138 kb on + strandat 918.154 kb on + strandat 918.161 kb on - strandat 918.215 kb on + strand, within HUW76_04565at 918.216 kb on - strand, within HUW76_04565at 918.217 kb on - strand, within HUW76_04565at 918.344 kb on + strand, within HUW76_04565at 918.386 kb on + strand, within HUW76_04565at 918.386 kb on + strand, within HUW76_04565at 918.449 kb on + strand, within HUW76_04565at 918.449 kb on + strand, within HUW76_04565at 918.611 kb on + strand, within HUW76_04565at 918.647 kb on + strand, within HUW76_04565at 918.647 kb on + strand, within HUW76_04565at 918.647 kb on + strand, within HUW76_04565at 918.655 kb on - strand, within HUW76_04565at 918.655 kb on - strand, within HUW76_04565at 918.656 kb on - strand, within HUW76_04565at 918.656 kb on - strand, within HUW76_04565at 918.716 kb on + strand, within HUW76_04565at 918.716 kb on + strand, within HUW76_04565at 918.724 kb on - strand, within HUW76_04565at 918.802 kb on + strand, within HUW76_04565at 918.802 kb on + strand, within HUW76_04565at 918.804 kb on + strand, within HUW76_04565at 918.804 kb on + strand, within HUW76_04565at 918.804 kb on + strand, within HUW76_04565at 918.821 kb on - strand, within HUW76_04565at 918.927 kb on + strand, within HUW76_04565at 918.931 kb on + strand, within HUW76_04565at 918.988 kb on - strand, within HUW76_04565at 919.135 kb on - strand, within HUW76_04565at 919.145 kb on - strand, within HUW76_04565at 919.145 kb on - strand, within HUW76_04565at 919.145 kb on - strand, within HUW76_04565at 919.149 kb on + strand, within HUW76_04565at 919.157 kb on - strand, within HUW76_04565at 919.181 kb on - strand, within HUW76_04565at 919.446 kb on + strand, within HUW76_04565at 919.491 kb on - strand, within HUW76_04565at 919.491 kb on - strand, within HUW76_04565at 919.587 kb on + strand, within HUW76_04565at 919.587 kb on + strand, within HUW76_04565at 919.595 kb on + strand, within HUW76_04565at 919.595 kb on - strand, within HUW76_04565at 919.595 kb on - strand, within HUW76_04565at 919.595 kb on - strand, within HUW76_04565at 919.597 kb on + strand, within HUW76_04565at 919.597 kb on + strand, within HUW76_04565at 919.597 kb on + strand, within HUW76_04565at 919.597 kb on + strand, within HUW76_04565at 919.605 kb on - strand, within HUW76_04565at 919.605 kb on - strand, within HUW76_04565at 919.605 kb on - strand, within HUW76_04565at 919.605 kb on - strand, within HUW76_04565at 919.705 kb on + strand, within HUW76_04565at 919.721 kb on - strand, within HUW76_04565at 919.721 kb on - strand, within HUW76_04565at 919.768 kb on - strand, within HUW76_04565at 919.769 kb on + strand, within HUW76_04565at 919.769 kb on + strand, within HUW76_04565at 919.789 kb on - strand, within HUW76_04565at 919.980 kb on + strand, within HUW76_04565at 919.988 kb on - strand, within HUW76_04565at 919.988 kb on - strand, within HUW76_04565at 920.064 kb on + strand, within HUW76_04565at 920.098 kb on + strand, within HUW76_04565at 920.098 kb on + strand, within HUW76_04565at 920.113 kb on + strand, within HUW76_04565at 920.132 kb on + strand, within HUW76_04565at 920.133 kb on + strand, within HUW76_04565at 920.133 kb on + strand, within HUW76_04565at 920.141 kb on - strand, within HUW76_04565at 920.330 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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916,982 + HUW76_04555 0.84 +1.1
916,982 + HUW76_04555 0.84 +0.6
916,982 + HUW76_04555 0.84 +0.7
916,982 + HUW76_04555 0.84 +2.2
916,982 + HUW76_04555 0.84 +2.0
916,982 + HUW76_04555 0.84 +1.8
916,982 + HUW76_04555 0.84 +0.2
916,982 + HUW76_04555 0.84 +2.2
916,982 + HUW76_04555 0.84 +2.2
916,982 + HUW76_04555 0.84 +1.9
916,990 + HUW76_04555 0.84 -0.4
916,990 - HUW76_04555 0.84 -0.3
916,990 - HUW76_04555 0.84 +0.1
916,990 - HUW76_04555 0.84 -0.1
916,990 - HUW76_04555 0.84 +0.3
916,990 - HUW76_04555 0.84 +0.1
916,990 - HUW76_04555 0.84 -0.0
916,990 - HUW76_04555 0.84 -1.9
916,990 - HUW76_04555 0.84 +0.6
916,990 - HUW76_04555 0.84 +0.3
916,990 - HUW76_04555 0.84 -1.0
916,990 - HUW76_04555 0.84 +0.1
916,990 - HUW76_04555 0.84 +0.5
916,990 - HUW76_04555 0.84 -1.1
916,990 - HUW76_04555 0.84 +0.2
916,996 + HUW76_04555 0.85 +1.1
917,006 + HUW76_04555 0.86 +0.9
917,006 + HUW76_04555 0.86 +1.4
917,014 - HUW76_04555 0.87 -0.1
917,014 - HUW76_04555 0.87 -1.0
917,065 + -0.1
917,093 + -0.4
917,093 + -1.5
917,093 + -0.4
917,093 + +3.2
917,095 + +0.7
917,101 - -0.8
917,101 - -0.2
917,106 + +1.6
917,123 - +0.4
917,285 - -0.2
917,325 + +0.2
917,326 + -0.8
917,326 + +0.1
917,417 + +0.1
917,709 + HUW76_04560 0.57 -0.1
917,929 + +0.8
917,929 + +0.2
918,088 - +2.2
918,138 + +0.2
918,154 + +0.8
918,161 - -0.8
918,215 + HUW76_04565 0.11 +0.6
918,216 - HUW76_04565 0.11 -0.6
918,217 - HUW76_04565 0.12 +1.5
918,344 + HUW76_04565 0.17 -0.4
918,386 + HUW76_04565 0.18 +0.4
918,386 + HUW76_04565 0.18 +0.5
918,449 + HUW76_04565 0.21 -0.1
918,449 + HUW76_04565 0.21 +0.1
918,611 + HUW76_04565 0.28 -0.4
918,647 + HUW76_04565 0.29 +0.2
918,647 + HUW76_04565 0.29 -0.2
918,647 + HUW76_04565 0.29 +1.2
918,655 - HUW76_04565 0.29 +1.0
918,655 - HUW76_04565 0.29 +2.1
918,656 - HUW76_04565 0.29 -1.8
918,656 - HUW76_04565 0.29 +1.1
918,716 + HUW76_04565 0.32 +0.4
918,716 + HUW76_04565 0.32 +0.5
918,724 - HUW76_04565 0.32 -1.1
918,802 + HUW76_04565 0.35 +0.4
918,802 + HUW76_04565 0.35 -0.6
918,804 + HUW76_04565 0.35 +1.2
918,804 + HUW76_04565 0.35 +1.2
918,804 + HUW76_04565 0.35 +0.4
918,821 - HUW76_04565 0.36 +2.2
918,927 + HUW76_04565 0.40 +0.7
918,931 + HUW76_04565 0.41 +0.5
918,988 - HUW76_04565 0.43 +0.6
919,135 - HUW76_04565 0.49 +0.6
919,145 - HUW76_04565 0.49 +0.6
919,145 - HUW76_04565 0.49 +1.0
919,145 - HUW76_04565 0.49 -0.8
919,149 + HUW76_04565 0.49 +1.3
919,157 - HUW76_04565 0.50 +0.9
919,181 - HUW76_04565 0.51 +2.4
919,446 + HUW76_04565 0.61 +0.6
919,491 - HUW76_04565 0.63 +1.0
919,491 - HUW76_04565 0.63 +1.5
919,587 + HUW76_04565 0.67 +0.6
919,587 + HUW76_04565 0.67 +0.2
919,595 + HUW76_04565 0.67 +0.5
919,595 - HUW76_04565 0.67 +0.5
919,595 - HUW76_04565 0.67 +1.5
919,595 - HUW76_04565 0.67 +0.2
919,597 + HUW76_04565 0.68 -0.5
919,597 + HUW76_04565 0.68 +0.6
919,597 + HUW76_04565 0.68 +0.9
919,597 + HUW76_04565 0.68 +0.9
919,605 - HUW76_04565 0.68 +1.5
919,605 - HUW76_04565 0.68 +1.4
919,605 - HUW76_04565 0.68 +0.9
919,605 - HUW76_04565 0.68 +1.4
919,705 + HUW76_04565 0.72 -0.2
919,721 - HUW76_04565 0.73 +0.6
919,721 - HUW76_04565 0.73 -0.1
919,768 - HUW76_04565 0.75 +2.2
919,769 + HUW76_04565 0.75 +0.1
919,769 + HUW76_04565 0.75 +1.6
919,789 - HUW76_04565 0.75 +1.3
919,980 + HUW76_04565 0.83 +0.8
919,988 - HUW76_04565 0.83 +1.5
919,988 - HUW76_04565 0.83 -0.3
920,064 + HUW76_04565 0.87 +0.7
920,098 + HUW76_04565 0.88 +0.3
920,098 + HUW76_04565 0.88 +0.8
920,113 + HUW76_04565 0.89 +0.6
920,132 + HUW76_04565 0.89 +0.7
920,133 + HUW76_04565 0.89 +1.3
920,133 + HUW76_04565 0.89 +0.9
920,141 - HUW76_04565 0.90 +0.8
920,330 + +0.8

Or see this region's nucleotide sequence