Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04430

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04420 and HUW76_04425 overlap by 4 nucleotidesHUW76_04425 and HUW76_04430 are separated by 198 nucleotidesHUW76_04430 and HUW76_04435 are separated by 76 nucleotidesHUW76_04435 and HUW76_04440 overlap by 8 nucleotides HUW76_04420: HUW76_04420 - chromate transporter, at 893,067 to 893,627 _04420 HUW76_04425: HUW76_04425 - chromate transporter, at 893,624 to 894,154 _04425 HUW76_04430: HUW76_04430 - NADH:flavin oxidoreductase, at 894,353 to 895,300 _04430 HUW76_04435: HUW76_04435 - type II toxin-antitoxin system HicB family antitoxin, at 895,377 to 896,255 _04435 HUW76_04440: HUW76_04440 - phosphatidylinositol-4-phosphate 5-kinase, at 896,248 to 897,129 _04440 Position (kb) 894 895 896Strain fitness (log2 ratio) -2 -1 0 1 2 3at 893.358 kb on + strand, within HUW76_04420at 893.358 kb on + strand, within HUW76_04420at 893.421 kb on - strand, within HUW76_04420at 893.421 kb on - strand, within HUW76_04420at 893.422 kb on - strand, within HUW76_04420at 893.422 kb on - strand, within HUW76_04420at 893.427 kb on - strand, within HUW76_04420at 893.427 kb on - strand, within HUW76_04420at 893.466 kb on - strand, within HUW76_04420at 893.466 kb on - strand, within HUW76_04420at 893.576 kb on - strandat 893.576 kb on - strandat 893.658 kb on + strandat 893.658 kb on + strandat 893.688 kb on + strand, within HUW76_04425at 893.688 kb on + strand, within HUW76_04425at 893.696 kb on - strand, within HUW76_04425at 893.708 kb on - strand, within HUW76_04425at 893.708 kb on - strand, within HUW76_04425at 893.718 kb on + strand, within HUW76_04425at 893.718 kb on + strand, within HUW76_04425at 893.824 kb on + strand, within HUW76_04425at 893.824 kb on + strand, within HUW76_04425at 893.824 kb on + strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.842 kb on - strand, within HUW76_04425at 893.847 kb on + strand, within HUW76_04425at 893.871 kb on + strand, within HUW76_04425at 893.914 kb on - strand, within HUW76_04425at 893.914 kb on - strand, within HUW76_04425at 893.914 kb on - strand, within HUW76_04425at 893.961 kb on + strand, within HUW76_04425at 893.968 kb on - strand, within HUW76_04425at 893.981 kb on - strand, within HUW76_04425at 893.981 kb on - strand, within HUW76_04425at 894.062 kb on + strand, within HUW76_04425at 894.096 kb on + strand, within HUW76_04425at 894.096 kb on + strand, within HUW76_04425at 894.130 kb on - strandat 894.134 kb on + strandat 894.134 kb on + strandat 894.134 kb on + strandat 894.134 kb on + strandat 894.134 kb on + strandat 894.134 kb on + strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.142 kb on - strandat 894.248 kb on + strandat 894.423 kb on + strandat 894.452 kb on + strand, within HUW76_04430at 894.457 kb on + strand, within HUW76_04430at 894.462 kb on + strand, within HUW76_04430at 894.462 kb on + strand, within HUW76_04430at 894.608 kb on - strand, within HUW76_04430at 894.610 kb on + strand, within HUW76_04430at 894.618 kb on - strand, within HUW76_04430at 894.618 kb on - strand, within HUW76_04430at 894.618 kb on - strand, within HUW76_04430at 894.637 kb on + strand, within HUW76_04430at 894.645 kb on - strand, within HUW76_04430at 894.751 kb on - strand, within HUW76_04430at 894.751 kb on - strand, within HUW76_04430at 894.751 kb on - strand, within HUW76_04430at 894.950 kb on - strand, within HUW76_04430at 894.959 kb on - strand, within HUW76_04430at 894.996 kb on + strand, within HUW76_04430at 895.019 kb on - strand, within HUW76_04430at 895.031 kb on + strand, within HUW76_04430at 895.039 kb on - strand, within HUW76_04430at 895.039 kb on - strand, within HUW76_04430at 895.039 kb on - strand, within HUW76_04430at 895.098 kb on + strand, within HUW76_04430at 895.237 kb on + strandat 895.237 kb on + strandat 895.240 kb on - strandat 895.240 kb on - strandat 895.254 kb on - strandat 895.393 kb on + strandat 895.393 kb on + strandat 895.484 kb on + strand, within HUW76_04435at 895.484 kb on + strand, within HUW76_04435at 895.494 kb on - strand, within HUW76_04435at 895.494 kb on - strand, within HUW76_04435at 895.555 kb on + strand, within HUW76_04435at 895.555 kb on + strand, within HUW76_04435at 895.564 kb on - strand, within HUW76_04435at 895.590 kb on + strand, within HUW76_04435at 895.590 kb on + strand, within HUW76_04435at 895.599 kb on - strand, within HUW76_04435at 895.599 kb on - strand, within HUW76_04435at 895.607 kb on + strand, within HUW76_04435at 895.607 kb on + strand, within HUW76_04435at 895.607 kb on + strand, within HUW76_04435at 895.607 kb on + strand, within HUW76_04435at 895.607 kb on + strand, within HUW76_04435at 895.615 kb on - strand, within HUW76_04435at 895.661 kb on - strand, within HUW76_04435at 895.671 kb on + strand, within HUW76_04435at 895.671 kb on + strand, within HUW76_04435at 895.679 kb on - strand, within HUW76_04435at 895.733 kb on + strand, within HUW76_04435at 895.737 kb on + strand, within HUW76_04435at 895.788 kb on + strand, within HUW76_04435at 895.790 kb on + strand, within HUW76_04435at 895.790 kb on + strand, within HUW76_04435at 895.815 kb on - strand, within HUW76_04435at 895.819 kb on + strand, within HUW76_04435at 895.819 kb on + strand, within HUW76_04435at 895.827 kb on - strand, within HUW76_04435at 895.827 kb on - strand, within HUW76_04435at 895.879 kb on - strand, within HUW76_04435at 896.013 kb on - strand, within HUW76_04435at 896.130 kb on - strand, within HUW76_04435at 896.136 kb on + strand, within HUW76_04435at 896.161 kb on - strand, within HUW76_04435at 896.202 kb on + strandat 896.202 kb on + strandat 896.212 kb on + strandat 896.212 kb on + strandat 896.217 kb on - strandat 896.229 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.240 kb on + strandat 896.247 kb on - strandat 896.247 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.248 kb on - strandat 896.257 kb on + strandat 896.257 kb on + strandat 896.265 kb on - strandat 896.265 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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893,358 + HUW76_04420 0.52 -0.3
893,358 + HUW76_04420 0.52 +0.3
893,421 - HUW76_04420 0.63 +1.1
893,421 - HUW76_04420 0.63 +0.6
893,422 - HUW76_04420 0.63 +1.3
893,422 - HUW76_04420 0.63 +0.9
893,427 - HUW76_04420 0.64 +0.6
893,427 - HUW76_04420 0.64 +1.3
893,466 - HUW76_04420 0.71 +0.6
893,466 - HUW76_04420 0.71 -0.5
893,576 - -0.1
893,576 - +0.7
893,658 + -2.1
893,658 + -0.1
893,688 + HUW76_04425 0.12 -0.6
893,688 + HUW76_04425 0.12 -0.8
893,696 - HUW76_04425 0.14 -0.7
893,708 - HUW76_04425 0.16 -0.6
893,708 - HUW76_04425 0.16 +1.3
893,718 + HUW76_04425 0.18 -0.5
893,718 + HUW76_04425 0.18 -0.8
893,824 + HUW76_04425 0.38 -0.7
893,824 + HUW76_04425 0.38 -1.0
893,824 + HUW76_04425 0.38 +0.2
893,832 - HUW76_04425 0.39 +1.1
893,832 - HUW76_04425 0.39 +0.2
893,832 - HUW76_04425 0.39 +1.0
893,832 - HUW76_04425 0.39 -1.1
893,832 - HUW76_04425 0.39 -0.6
893,842 - HUW76_04425 0.41 +1.0
893,847 + HUW76_04425 0.42 -0.9
893,871 + HUW76_04425 0.47 -0.7
893,914 - HUW76_04425 0.55 -0.5
893,914 - HUW76_04425 0.55 +0.8
893,914 - HUW76_04425 0.55 +0.6
893,961 + HUW76_04425 0.63 -0.6
893,968 - HUW76_04425 0.65 +0.3
893,981 - HUW76_04425 0.67 +0.8
893,981 - HUW76_04425 0.67 -0.3
894,062 + HUW76_04425 0.82 -1.6
894,096 + HUW76_04425 0.89 -0.7
894,096 + HUW76_04425 0.89 -0.0
894,130 - -0.6
894,134 + -0.2
894,134 + +0.0
894,134 + +0.0
894,134 + -0.7
894,134 + -0.1
894,134 + -0.2
894,142 - +1.1
894,142 - +2.3
894,142 - +3.0
894,142 - +1.8
894,142 - +0.9
894,142 - +0.1
894,142 - +1.6
894,248 + +0.2
894,423 + +0.3
894,452 + HUW76_04430 0.10 -0.1
894,457 + HUW76_04430 0.11 -0.0
894,462 + HUW76_04430 0.11 +0.9
894,462 + HUW76_04430 0.11 +0.9
894,608 - HUW76_04430 0.27 +0.8
894,610 + HUW76_04430 0.27 -0.4
894,618 - HUW76_04430 0.28 -0.2
894,618 - HUW76_04430 0.28 -0.1
894,618 - HUW76_04430 0.28 -0.2
894,637 + HUW76_04430 0.30 -0.2
894,645 - HUW76_04430 0.31 +0.2
894,751 - HUW76_04430 0.42 -2.5
894,751 - HUW76_04430 0.42 +1.2
894,751 - HUW76_04430 0.42 -0.0
894,950 - HUW76_04430 0.63 +1.8
894,959 - HUW76_04430 0.64 +1.1
894,996 + HUW76_04430 0.68 +0.0
895,019 - HUW76_04430 0.70 +1.4
895,031 + HUW76_04430 0.72 -0.3
895,039 - HUW76_04430 0.72 +1.2
895,039 - HUW76_04430 0.72 +1.5
895,039 - HUW76_04430 0.72 +0.6
895,098 + HUW76_04430 0.79 -0.3
895,237 + -0.3
895,237 + -0.3
895,240 - -0.5
895,240 - -0.8
895,254 - -0.8
895,393 + +0.2
895,393 + +0.2
895,484 + HUW76_04435 0.12 -0.5
895,484 + HUW76_04435 0.12 +0.1
895,494 - HUW76_04435 0.13 -0.2
895,494 - HUW76_04435 0.13 -1.1
895,555 + HUW76_04435 0.20 -1.7
895,555 + HUW76_04435 0.20 -0.3
895,564 - HUW76_04435 0.21 +0.1
895,590 + HUW76_04435 0.24 +1.0
895,590 + HUW76_04435 0.24 +0.8
895,599 - HUW76_04435 0.25 -1.0
895,599 - HUW76_04435 0.25 +0.2
895,607 + HUW76_04435 0.26 +0.3
895,607 + HUW76_04435 0.26 -0.1
895,607 + HUW76_04435 0.26 +0.2
895,607 + HUW76_04435 0.26 -1.0
895,607 + HUW76_04435 0.26 +0.5
895,615 - HUW76_04435 0.27 +0.5
895,661 - HUW76_04435 0.32 +0.4
895,671 + HUW76_04435 0.33 -0.2
895,671 + HUW76_04435 0.33 -0.5
895,679 - HUW76_04435 0.34 -0.5
895,733 + HUW76_04435 0.41 +0.1
895,737 + HUW76_04435 0.41 -0.1
895,788 + HUW76_04435 0.47 +0.7
895,790 + HUW76_04435 0.47 -0.4
895,790 + HUW76_04435 0.47 -0.8
895,815 - HUW76_04435 0.50 +1.6
895,819 + HUW76_04435 0.50 -0.7
895,819 + HUW76_04435 0.50 -0.5
895,827 - HUW76_04435 0.51 +0.7
895,827 - HUW76_04435 0.51 +1.1
895,879 - HUW76_04435 0.57 -0.8
896,013 - HUW76_04435 0.72 +0.2
896,130 - HUW76_04435 0.86 +0.4
896,136 + HUW76_04435 0.86 -0.3
896,161 - HUW76_04435 0.89 -0.2
896,202 + +0.6
896,202 + -0.2
896,212 + -1.9
896,212 + -0.9
896,217 - +1.2
896,229 + -0.5
896,240 + -0.7
896,240 + -0.3
896,240 + -0.4
896,240 + -0.9
896,240 + -0.8
896,240 + -1.3
896,240 + -0.3
896,240 + +0.9
896,240 + +2.2
896,247 - +0.4
896,247 - +1.0
896,248 - +1.8
896,248 - +0.7
896,248 - +0.7
896,248 - +1.0
896,248 - +2.8
896,248 - -0.9
896,248 - +0.4
896,248 - -1.1
896,248 - +2.5
896,248 - +1.2
896,248 - +0.7
896,257 + -0.5
896,257 + -0.8
896,265 - +1.8
896,265 - -0.3

Or see this region's nucleotide sequence