Experiment: Time0_glycerolstock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_03535 and HUW76_03540 are separated by 54 nucleotides HUW76_03540 and HUW76_03545 overlap by 1 nucleotides HUW76_03545 and HUW76_03550 are separated by 314 nucleotides HUW76_03550 and HUW76_03555 are separated by 388 nucleotides HUW76_03555 and HUW76_03560 are separated by 230 nucleotides
HUW76_03535: HUW76_03535 - ATP-binding cassette domain-containing protein, at 709,874 to 710,848
_03535
HUW76_03540: HUW76_03540 - Txe/YoeB family addiction module toxin, at 710,903 to 711,169
_03540
HUW76_03545: HUW76_03545 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 711,169 to 711,435
_03545
HUW76_03550: HUW76_03550 - hypothetical protein, at 711,750 to 712,226
_03550
HUW76_03555: HUW76_03555 - integrase, at 712,615 to 712,743
_03555
HUW76_03560: HUW76_03560 - hypothetical protein, at 712,974 to 713,396
_03560
Position (kb) 711
712
713 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 710.790 kb on - strand at 710.809 kb on + strand at 710.922 kb on + strand at 710.922 kb on + strand at 710.922 kb on + strand at 710.922 kb on + strand at 710.938 kb on - strand, within HUW76_03540 at 710.978 kb on - strand, within HUW76_03540 at 710.978 kb on - strand, within HUW76_03540 at 710.999 kb on + strand, within HUW76_03540 at 711.004 kb on - strand, within HUW76_03540 at 711.007 kb on - strand, within HUW76_03540 at 711.007 kb on - strand, within HUW76_03540 at 711.007 kb on - strand, within HUW76_03540 at 711.033 kb on + strand, within HUW76_03540 at 711.045 kb on - strand, within HUW76_03540 at 711.047 kb on + strand, within HUW76_03540 at 711.102 kb on - strand, within HUW76_03540 at 711.102 kb on - strand, within HUW76_03540 at 711.104 kb on + strand, within HUW76_03540 at 711.104 kb on + strand, within HUW76_03540 at 711.104 kb on + strand, within HUW76_03540 at 711.104 kb on + strand, within HUW76_03540 at 711.138 kb on + strand, within HUW76_03540 at 711.138 kb on + strand, within HUW76_03540 at 711.172 kb on + strand at 711.172 kb on + strand at 711.189 kb on - strand at 711.241 kb on + strand, within HUW76_03545 at 711.241 kb on + strand, within HUW76_03545 at 711.269 kb on - strand, within HUW76_03545 at 711.283 kb on - strand, within HUW76_03545 at 711.283 kb on - strand, within HUW76_03545 at 711.290 kb on + strand, within HUW76_03545 at 711.358 kb on + strand, within HUW76_03545 at 711.493 kb on + strand at 711.501 kb on - strand at 711.501 kb on - strand at 711.583 kb on - strand at 711.587 kb on + strand at 711.664 kb on + strand at 711.664 kb on + strand at 711.672 kb on - strand at 711.719 kb on - strand at 711.719 kb on - strand at 711.779 kb on - strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.781 kb on + strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.789 kb on - strand at 711.791 kb on + strand at 711.791 kb on + strand at 711.791 kb on + strand at 711.791 kb on + strand at 711.799 kb on - strand, within HUW76_03550 at 711.799 kb on - strand, within HUW76_03550 at 711.805 kb on + strand, within HUW76_03550 at 711.805 kb on + strand, within HUW76_03550 at 711.813 kb on - strand, within HUW76_03550 at 711.813 kb on - strand, within HUW76_03550 at 711.813 kb on - strand, within HUW76_03550 at 712.034 kb on + strand, within HUW76_03550 at 712.034 kb on + strand, within HUW76_03550 at 712.085 kb on + strand, within HUW76_03550 at 712.085 kb on + strand, within HUW76_03550 at 712.103 kb on - strand, within HUW76_03550 at 712.128 kb on + strand, within HUW76_03550 at 712.136 kb on - strand, within HUW76_03550 at 712.140 kb on - strand, within HUW76_03550 at 712.334 kb on - strand at 712.437 kb on - strand at 712.460 kb on + strand at 712.460 kb on + strand at 712.465 kb on + strand at 712.465 kb on + strand at 712.467 kb on - strand at 712.519 kb on + strand at 712.607 kb on + strand at 712.607 kb on + strand at 712.607 kb on + strand at 712.610 kb on - strand at 712.610 kb on - strand at 712.617 kb on + strand at 712.660 kb on + strand, within HUW76_03555 at 712.660 kb on + strand, within HUW76_03555 at 712.679 kb on - strand, within HUW76_03555 at 712.679 kb on - strand, within HUW76_03555 at 712.682 kb on + strand, within HUW76_03555 at 712.682 kb on + strand, within HUW76_03555 at 712.704 kb on + strand, within HUW76_03555 at 712.714 kb on + strand, within HUW76_03555 at 712.813 kb on + strand at 712.813 kb on + strand at 712.813 kb on + strand at 712.813 kb on + strand at 712.813 kb on + strand at 713.051 kb on + strand, within HUW76_03560 at 713.051 kb on + strand, within HUW76_03560 at 713.051 kb on + strand, within HUW76_03560 at 713.051 kb on + strand, within HUW76_03560 at 713.051 kb on + strand, within HUW76_03560 at 713.100 kb on + strand, within HUW76_03560 at 713.100 kb on + strand, within HUW76_03560 at 713.113 kb on + strand, within HUW76_03560 at 713.113 kb on + strand, within HUW76_03560 at 713.218 kb on + strand, within HUW76_03560 at 713.218 kb on + strand, within HUW76_03560
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_glycerolstock remove 710,790 - +0.3 710,809 + -0.5 710,922 + -1.1 710,922 + +1.1 710,922 + -0.1 710,922 + -0.9 710,938 - HUW76_03540 0.13 -0.1 710,978 - HUW76_03540 0.28 -0.5 710,978 - HUW76_03540 0.28 -0.2 710,999 + HUW76_03540 0.36 +1.6 711,004 - HUW76_03540 0.38 -0.3 711,007 - HUW76_03540 0.39 -0.6 711,007 - HUW76_03540 0.39 -0.4 711,007 - HUW76_03540 0.39 -0.8 711,033 + HUW76_03540 0.49 +0.0 711,045 - HUW76_03540 0.53 -0.2 711,047 + HUW76_03540 0.54 +0.9 711,102 - HUW76_03540 0.75 -0.6 711,102 - HUW76_03540 0.75 -1.1 711,104 + HUW76_03540 0.75 +0.8 711,104 + HUW76_03540 0.75 +1.3 711,104 + HUW76_03540 0.75 +0.7 711,104 + HUW76_03540 0.75 +0.8 711,138 + HUW76_03540 0.88 +2.1 711,138 + HUW76_03540 0.88 +0.4 711,172 + +1.7 711,172 + +0.9 711,189 - +1.7 711,241 + HUW76_03545 0.27 -0.2 711,241 + HUW76_03545 0.27 +0.1 711,269 - HUW76_03545 0.37 -0.8 711,283 - HUW76_03545 0.43 -0.2 711,283 - HUW76_03545 0.43 +0.1 711,290 + HUW76_03545 0.45 +0.3 711,358 + HUW76_03545 0.71 +2.4 711,493 + +2.1 711,501 - -2.0 711,501 - -0.8 711,583 - +0.2 711,587 + -1.1 711,664 + +0.7 711,664 + -1.0 711,672 - +0.3 711,719 - -0.2 711,719 - +1.1 711,779 - -0.1 711,781 + +1.1 711,781 + -0.7 711,781 + +0.8 711,781 + +0.7 711,781 + -0.4 711,781 + -1.6 711,781 + -0.1 711,781 + +0.6 711,781 + +0.4 711,781 + +0.5 711,781 + -0.2 711,781 + +0.7 711,781 + +0.3 711,781 + -0.2 711,781 + +0.5 711,781 + -0.7 711,781 + -0.7 711,781 + +0.9 711,781 + +0.4 711,781 + +1.2 711,781 + +0.4 711,781 + -0.4 711,781 + +0.9 711,781 + -0.9 711,781 + -0.3 711,781 + +1.3 711,781 + -1.3 711,781 + -0.3 711,781 + +0.3 711,789 - -0.4 711,789 - -0.3 711,789 - -0.2 711,789 - -0.2 711,789 - -1.0 711,789 - -0.1 711,789 - +0.1 711,789 - -0.1 711,789 - +0.2 711,789 - -0.5 711,789 - -0.3 711,789 - -0.1 711,789 - +0.9 711,789 - -0.1 711,791 + -1.0 711,791 + -0.2 711,791 + -0.6 711,791 + -0.1 711,799 - HUW76_03550 0.10 -0.4 711,799 - HUW76_03550 0.10 -0.9 711,805 + HUW76_03550 0.12 +0.1 711,805 + HUW76_03550 0.12 +0.2 711,813 - HUW76_03550 0.13 -0.2 711,813 - HUW76_03550 0.13 -0.8 711,813 - HUW76_03550 0.13 -0.7 712,034 + HUW76_03550 0.60 -0.2 712,034 + HUW76_03550 0.60 +0.5 712,085 + HUW76_03550 0.70 +0.6 712,085 + HUW76_03550 0.70 -0.3 712,103 - HUW76_03550 0.74 +0.1 712,128 + HUW76_03550 0.79 -0.2 712,136 - HUW76_03550 0.81 +0.3 712,140 - HUW76_03550 0.82 +0.0 712,334 - +0.1 712,437 - -0.6 712,460 + -1.3 712,460 + -1.0 712,465 + +0.3 712,465 + +0.0 712,467 - -0.4 712,519 + -0.4 712,607 + -0.9 712,607 + -0.3 712,607 + -0.1 712,610 - -0.1 712,610 - -0.3 712,617 + +0.3 712,660 + HUW76_03555 0.35 -0.8 712,660 + HUW76_03555 0.35 +2.9 712,679 - HUW76_03555 0.50 -0.0 712,679 - HUW76_03555 0.50 -0.2 712,682 + HUW76_03555 0.52 +0.4 712,682 + HUW76_03555 0.52 +0.2 712,704 + HUW76_03555 0.69 -0.5 712,714 + HUW76_03555 0.77 +0.3 712,813 + -0.9 712,813 + -0.4 712,813 + -1.7 712,813 + -0.6 712,813 + -0.3 713,051 + HUW76_03560 0.18 -0.6 713,051 + HUW76_03560 0.18 +0.5 713,051 + HUW76_03560 0.18 +0.1 713,051 + HUW76_03560 0.18 -0.0 713,051 + HUW76_03560 0.18 -0.4 713,100 + HUW76_03560 0.30 +0.3 713,100 + HUW76_03560 0.30 +0.1 713,113 + HUW76_03560 0.33 +0.4 713,113 + HUW76_03560 0.33 -0.1 713,218 + HUW76_03560 0.58 +0.3 713,218 + HUW76_03560 0.58 -1.4
Or see this region's nucleotide sequence