Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_29930 and JDDGAC_29935 overlap by 4 nucleotides JDDGAC_29935 and JDDGAC_29940 overlap by 4 nucleotides JDDGAC_29940 and ccdA are separated by 542 nucleotides ccdA and ccdB are separated by 1 nucleotides
JDDGAC_29930: JDDGAC_29930 - W0044, at 12,965 to 13,165
_29930
JDDGAC_29935: JDDGAC_29935 - hypothetical protein, at 13,162 to 13,782
_29935
JDDGAC_29940: JDDGAC_29940 - Plasmid replication region DNA-binding N-term, at 13,779 to 14,378
_29940
JDDGAC_29945: ccdA - type II toxin-antitoxin system antitoxin CcdA, at 14,921 to 15,139
ccdA
JDDGAC_29950: ccdB - type II toxin-antitoxin system toxin CcdB, at 15,141 to 15,446
ccdB
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 12.783 kb on + strand at 12.790 kb on + strand at 12.812 kb on - strand at 12.931 kb on + strand at 12.954 kb on + strand at 12.954 kb on + strand at 12.955 kb on - strand at 12.955 kb on - strand at 12.955 kb on - strand at 12.967 kb on - strand at 12.968 kb on + strand at 12.968 kb on + strand at 12.968 kb on + strand at 12.969 kb on - strand at 12.969 kb on - strand at 12.992 kb on - strand, within JDDGAC_29930 at 13.070 kb on - strand, within JDDGAC_29930 at 13.070 kb on - strand, within JDDGAC_29930 at 13.070 kb on - strand, within JDDGAC_29930 at 13.070 kb on - strand, within JDDGAC_29930 at 13.149 kb on + strand at 13.149 kb on + strand at 13.155 kb on + strand at 13.155 kb on + strand at 13.155 kb on + strand at 13.155 kb on + strand at 13.156 kb on - strand at 13.240 kb on - strand, within JDDGAC_29935 at 13.242 kb on + strand, within JDDGAC_29935 at 13.242 kb on + strand, within JDDGAC_29935 at 13.243 kb on - strand, within JDDGAC_29935 at 13.265 kb on - strand, within JDDGAC_29935 at 13.265 kb on - strand, within JDDGAC_29935 at 13.337 kb on + strand, within JDDGAC_29935 at 13.338 kb on - strand, within JDDGAC_29935 at 13.402 kb on - strand, within JDDGAC_29935 at 13.402 kb on - strand, within JDDGAC_29935 at 13.405 kb on - strand, within JDDGAC_29935 at 13.458 kb on - strand, within JDDGAC_29935 at 13.499 kb on + strand, within JDDGAC_29935 at 13.500 kb on - strand, within JDDGAC_29935 at 13.516 kb on + strand, within JDDGAC_29935 at 13.517 kb on - strand, within JDDGAC_29935 at 13.619 kb on + strand, within JDDGAC_29935 at 13.620 kb on - strand, within JDDGAC_29935 at 13.622 kb on + strand, within JDDGAC_29935 at 13.622 kb on + strand, within JDDGAC_29935 at 13.632 kb on + strand, within JDDGAC_29935 at 13.632 kb on + strand, within JDDGAC_29935 at 13.758 kb on + strand at 13.758 kb on + strand at 13.758 kb on + strand at 13.759 kb on - strand at 13.759 kb on - strand at 13.762 kb on + strand at 13.762 kb on + strand at 13.762 kb on + strand at 13.763 kb on - strand at 13.763 kb on - strand at 13.765 kb on + strand at 13.956 kb on + strand, within JDDGAC_29940 at 13.966 kb on - strand, within JDDGAC_29940 at 14.440 kb on + strand at 14.449 kb on + strand at 14.462 kb on + strand at 14.462 kb on + strand at 14.462 kb on + strand at 14.463 kb on - strand at 14.463 kb on - strand at 14.463 kb on - strand at 14.476 kb on + strand at 14.480 kb on + strand at 14.481 kb on - strand at 14.481 kb on - strand at 14.481 kb on - strand at 14.481 kb on - strand at 14.553 kb on + strand at 14.553 kb on + strand at 14.554 kb on - strand at 14.603 kb on + strand at 14.603 kb on + strand at 14.604 kb on - strand at 14.604 kb on - strand at 14.605 kb on + strand at 14.605 kb on + strand at 14.605 kb on + strand at 14.605 kb on + strand at 14.605 kb on + strand at 14.605 kb on + strand at 14.605 kb on + strand at 14.605 kb on + strand at 14.606 kb on - strand at 14.606 kb on - strand at 14.606 kb on - strand at 14.606 kb on - strand at 14.606 kb on - strand at 14.606 kb on - strand at 14.618 kb on - strand at 14.682 kb on + strand at 14.682 kb on + strand at 14.683 kb on - strand at 14.683 kb on - strand at 14.683 kb on - strand at 14.710 kb on + strand at 14.711 kb on - strand at 14.742 kb on + strand at 14.759 kb on + strand at 14.807 kb on + strand at 14.811 kb on + strand at 14.811 kb on + strand at 14.812 kb on - strand at 14.822 kb on - strand at 14.838 kb on + strand at 14.875 kb on + strand at 14.876 kb on - strand at 14.889 kb on + strand at 15.156 kb on + strand at 15.156 kb on + strand at 15.156 kb on + strand at 15.163 kb on - strand at 15.165 kb on - strand at 15.165 kb on - strand at 15.200 kb on - strand, within ccdB at 15.200 kb on - strand, within ccdB at 15.200 kb on - strand, within ccdB at 15.210 kb on - strand, within ccdB at 15.212 kb on + strand, within ccdB at 15.212 kb on + strand, within ccdB at 15.213 kb on - strand, within ccdB at 15.272 kb on + strand, within ccdB
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 12,783 + +1.4 12,790 + -0.8 12,812 - +0.4 12,931 + -1.2 12,954 + -1.1 12,954 + -1.3 12,955 - +0.5 12,955 - -0.7 12,955 - +2.0 12,967 - -0.1 12,968 + -1.2 12,968 + -1.3 12,968 + -0.5 12,969 - -0.8 12,969 - -0.2 12,992 - JDDGAC_29930 0.13 +0.1 13,070 - JDDGAC_29930 0.52 +0.4 13,070 - JDDGAC_29930 0.52 -2.0 13,070 - JDDGAC_29930 0.52 +0.3 13,070 - JDDGAC_29930 0.52 -0.3 13,149 + +0.4 13,149 + -0.4 13,155 + +0.4 13,155 + -1.2 13,155 + -0.4 13,155 + +0.4 13,156 - +0.2 13,240 - JDDGAC_29935 0.13 +0.7 13,242 + JDDGAC_29935 0.13 -0.2 13,242 + JDDGAC_29935 0.13 +0.7 13,243 - JDDGAC_29935 0.13 +0.4 13,265 - JDDGAC_29935 0.17 -1.8 13,265 - JDDGAC_29935 0.17 -0.9 13,337 + JDDGAC_29935 0.28 +1.2 13,338 - JDDGAC_29935 0.28 +1.4 13,402 - JDDGAC_29935 0.39 -0.7 13,402 - JDDGAC_29935 0.39 -0.9 13,405 - JDDGAC_29935 0.39 +1.9 13,458 - JDDGAC_29935 0.48 -0.4 13,499 + JDDGAC_29935 0.54 +3.0 13,500 - JDDGAC_29935 0.54 -2.0 13,516 + JDDGAC_29935 0.57 -0.8 13,517 - JDDGAC_29935 0.57 -0.3 13,619 + JDDGAC_29935 0.74 -0.6 13,620 - JDDGAC_29935 0.74 -0.7 13,622 + JDDGAC_29935 0.74 -0.8 13,622 + JDDGAC_29935 0.74 +0.7 13,632 + JDDGAC_29935 0.76 -0.8 13,632 + JDDGAC_29935 0.76 -2.0 13,758 + +1.0 13,758 + -1.3 13,758 + +0.8 13,759 - -1.6 13,759 - +0.9 13,762 + -0.3 13,762 + +0.8 13,762 + -1.3 13,763 - +3.0 13,763 - +0.7 13,765 + -0.8 13,956 + JDDGAC_29940 0.29 -1.7 13,966 - JDDGAC_29940 0.31 -0.8 14,440 + +1.6 14,449 + -0.1 14,462 + +0.4 14,462 + -0.0 14,462 + -0.7 14,463 - -0.3 14,463 - -0.6 14,463 - +0.4 14,476 + -0.2 14,480 + +1.2 14,481 - -0.7 14,481 - +0.2 14,481 - -0.3 14,481 - +0.5 14,553 + -0.4 14,553 + -1.5 14,554 - +0.8 14,603 + +0.2 14,603 + -0.6 14,604 - -1.0 14,604 - -0.4 14,605 + +1.0 14,605 + -0.3 14,605 + +0.2 14,605 + -0.6 14,605 + +0.1 14,605 + -0.3 14,605 + -1.1 14,605 + -2.5 14,606 - -1.4 14,606 - +1.0 14,606 - -0.8 14,606 - +0.7 14,606 - -0.9 14,606 - -1.9 14,618 - +1.8 14,682 + +0.6 14,682 + -0.3 14,683 - -0.8 14,683 - -0.2 14,683 - +0.8 14,710 + +0.2 14,711 - +0.1 14,742 + +2.2 14,759 + +1.4 14,807 + -1.4 14,811 + +1.7 14,811 + -1.0 14,812 - +1.0 14,822 - -2.1 14,838 + +1.4 14,875 + +0.4 14,876 - +1.6 14,889 + -2.6 15,156 + -1.2 15,156 + -0.3 15,156 + -0.2 15,163 - -3.0 15,165 - +0.2 15,165 - +0.2 15,200 - ccdB JDDGAC_29950 0.19 -0.6 15,200 - ccdB JDDGAC_29950 0.19 -0.7 15,200 - ccdB JDDGAC_29950 0.19 +0.1 15,210 - ccdB JDDGAC_29950 0.23 +1.6 15,212 + ccdB JDDGAC_29950 0.23 +1.5 15,212 + ccdB JDDGAC_29950 0.23 +3.4 15,213 - ccdB JDDGAC_29950 0.24 +0.9 15,272 + ccdB JDDGAC_29950 0.43 +0.8
Or see this region's nucleotide sequence