Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28820 and JDDGAC_28825 overlap by 4 nucleotides JDDGAC_28825 and JDDGAC_28830 overlap by 23 nucleotides JDDGAC_28830 and JDDGAC_28835 are separated by 246 nucleotides JDDGAC_28835 and JDDGAC_28840 are separated by 1 nucleotides JDDGAC_28840 and JDDGAC_28845 are separated by 132 nucleotides JDDGAC_28845 and JDDGAC_28850 are separated by 10 nucleotides JDDGAC_28850 and JDDGAC_28855 overlap by 44 nucleotides
JDDGAC_28820: JDDGAC_28820 - replicative DNA helicase, at 5,516,723 to 5,518,099
_28820
JDDGAC_28825: JDDGAC_28825 - hypothetical protein, at 5,518,096 to 5,518,200
_28825
JDDGAC_28830: JDDGAC_28830 - Endonuclease, at 5,518,178 to 5,518,789
_28830
JDDGAC_28835: JDDGAC_28835 - hypothetical protein, at 5,519,036 to 5,519,251
_28835
JDDGAC_28840: JDDGAC_28840 - hypothetical protein, at 5,519,253 to 5,519,585
_28840
JDDGAC_28845: JDDGAC_28845 - hypothetical protein, at 5,519,718 to 5,519,933
_28845
JDDGAC_28850: JDDGAC_28850 - restriction alleviation protein, Lar family, at 5,519,944 to 5,520,180
_28850
JDDGAC_28855: JDDGAC_28855 - recombination protein NinB, at 5,520,137 to 5,520,583
_28855
Position (kb) 5519
5520 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5518.095 kb on + strand at 5518.106 kb on - strand at 5518.119 kb on - strand, within JDDGAC_28825 at 5518.121 kb on + strand, within JDDGAC_28825 at 5518.140 kb on - strand, within JDDGAC_28825 at 5518.159 kb on - strand, within JDDGAC_28825 at 5518.319 kb on + strand, within JDDGAC_28830 at 5518.322 kb on - strand, within JDDGAC_28830 at 5518.381 kb on - strand, within JDDGAC_28830 at 5518.579 kb on + strand, within JDDGAC_28830 at 5518.656 kb on - strand, within JDDGAC_28830 at 5518.672 kb on + strand, within JDDGAC_28830 at 5518.881 kb on + strand at 5518.882 kb on - strand at 5518.946 kb on + strand at 5518.996 kb on + strand at 5519.019 kb on - strand at 5519.036 kb on - strand at 5519.056 kb on + strand at 5519.093 kb on - strand, within JDDGAC_28835 at 5519.095 kb on + strand, within JDDGAC_28835 at 5519.095 kb on + strand, within JDDGAC_28835 at 5519.096 kb on - strand, within JDDGAC_28835 at 5519.099 kb on + strand, within JDDGAC_28835 at 5519.342 kb on + strand, within JDDGAC_28840 at 5519.342 kb on + strand, within JDDGAC_28840 at 5519.343 kb on - strand, within JDDGAC_28840 at 5519.346 kb on + strand, within JDDGAC_28840 at 5519.346 kb on + strand, within JDDGAC_28840 at 5519.346 kb on + strand, within JDDGAC_28840 at 5519.383 kb on + strand, within JDDGAC_28840 at 5519.384 kb on - strand, within JDDGAC_28840 at 5519.424 kb on - strand, within JDDGAC_28840 at 5519.528 kb on - strand, within JDDGAC_28840 at 5519.728 kb on + strand at 5519.817 kb on + strand, within JDDGAC_28845 at 5519.818 kb on - strand, within JDDGAC_28845 at 5519.818 kb on - strand, within JDDGAC_28845 at 5519.954 kb on + strand at 5519.955 kb on - strand at 5520.000 kb on + strand, within JDDGAC_28850 at 5520.033 kb on + strand, within JDDGAC_28850 at 5520.034 kb on - strand, within JDDGAC_28850 at 5520.049 kb on + strand, within JDDGAC_28850 at 5520.242 kb on - strand, within JDDGAC_28855
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,518,095 + +2.9 5,518,106 - -0.4 5,518,119 - JDDGAC_28825 0.22 +1.4 5,518,121 + JDDGAC_28825 0.24 -1.2 5,518,140 - JDDGAC_28825 0.42 +1.0 5,518,159 - JDDGAC_28825 0.60 +1.5 5,518,319 + JDDGAC_28830 0.23 -1.5 5,518,322 - JDDGAC_28830 0.24 +0.5 5,518,381 - JDDGAC_28830 0.33 -1.6 5,518,579 + JDDGAC_28830 0.66 -0.1 5,518,656 - JDDGAC_28830 0.78 +1.9 5,518,672 + JDDGAC_28830 0.81 -0.7 5,518,881 + +3.3 5,518,882 - -0.8 5,518,946 + +0.6 5,518,996 + -0.3 5,519,019 - -0.3 5,519,036 - +0.2 5,519,056 + +0.2 5,519,093 - JDDGAC_28835 0.26 -2.2 5,519,095 + JDDGAC_28835 0.27 +0.2 5,519,095 + JDDGAC_28835 0.27 -1.0 5,519,096 - JDDGAC_28835 0.28 +0.7 5,519,099 + JDDGAC_28835 0.29 -1.8 5,519,342 + JDDGAC_28840 0.27 +0.7 5,519,342 + JDDGAC_28840 0.27 -0.1 5,519,343 - JDDGAC_28840 0.27 -0.8 5,519,346 + JDDGAC_28840 0.28 -0.2 5,519,346 + JDDGAC_28840 0.28 +1.2 5,519,346 + JDDGAC_28840 0.28 +2.2 5,519,383 + JDDGAC_28840 0.39 -0.8 5,519,384 - JDDGAC_28840 0.39 +0.0 5,519,424 - JDDGAC_28840 0.51 +1.8 5,519,528 - JDDGAC_28840 0.83 +1.7 5,519,728 + +1.9 5,519,817 + JDDGAC_28845 0.46 -1.3 5,519,818 - JDDGAC_28845 0.46 -1.6 5,519,818 - JDDGAC_28845 0.46 +0.7 5,519,954 + -0.9 5,519,955 - +0.3 5,520,000 + JDDGAC_28850 0.24 +1.4 5,520,033 + JDDGAC_28850 0.38 -0.9 5,520,034 - JDDGAC_28850 0.38 -0.3 5,520,049 + JDDGAC_28850 0.44 +0.8 5,520,242 - JDDGAC_28855 0.23 +0.9
Or see this region's nucleotide sequence