Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt loiP and tkt are separated by 277 nucleotides tkt and cmtB are separated by 313 nucleotides cmtB and cmtA are separated by 27 nucleotides
JDDGAC_22950: loiP - metalloprotease LoiP, at 4,394,691 to 4,395,449
loiP
JDDGAC_22955: tkt - transketolase, at 4,395,727 to 4,397,718
tkt
JDDGAC_22960: cmtB - PTS mannitol transporter subunit IIA, at 4,398,032 to 4,398,475
cmtB
JDDGAC_22965: cmtA - PTS mannitol transporter subunit IICB, at 4,398,503 to 4,399,891
cmtA
Position (kb) 4395
4396
4397
4398 Strain fitness (log2 ratio) -1
0
1
2 at 4394.913 kb on + strand, within loiP at 4394.992 kb on - strand, within loiP at 4395.099 kb on - strand, within loiP at 4395.125 kb on + strand, within loiP at 4395.169 kb on + strand, within loiP at 4395.170 kb on - strand, within loiP at 4395.170 kb on - strand, within loiP at 4395.170 kb on - strand, within loiP at 4395.170 kb on - strand, within loiP at 4395.200 kb on + strand, within loiP at 4395.200 kb on + strand, within loiP at 4395.224 kb on + strand, within loiP at 4395.224 kb on + strand, within loiP at 4395.224 kb on + strand, within loiP at 4395.224 kb on + strand, within loiP at 4395.224 kb on + strand, within loiP at 4395.225 kb on - strand, within loiP at 4395.225 kb on - strand, within loiP at 4395.239 kb on + strand, within loiP at 4395.337 kb on + strand, within loiP at 4395.338 kb on - strand, within loiP at 4395.338 kb on - strand, within loiP at 4395.386 kb on + strand at 4395.433 kb on - strand at 4395.477 kb on + strand at 4395.524 kb on + strand at 4395.524 kb on + strand at 4395.524 kb on + strand at 4395.525 kb on - strand at 4395.527 kb on - strand at 4395.527 kb on - strand at 4395.615 kb on + strand at 4395.615 kb on + strand at 4395.756 kb on + strand at 4396.039 kb on + strand, within tkt at 4396.409 kb on + strand, within tkt at 4396.666 kb on + strand, within tkt at 4396.937 kb on - strand, within tkt at 4397.064 kb on + strand, within tkt at 4397.064 kb on + strand, within tkt at 4397.094 kb on + strand, within tkt at 4397.239 kb on + strand, within tkt at 4397.348 kb on - strand, within tkt at 4397.584 kb on + strand at 4397.590 kb on + strand at 4397.591 kb on - strand at 4397.591 kb on - strand at 4397.716 kb on + strand at 4397.716 kb on + strand at 4397.721 kb on - strand at 4398.477 kb on + strand at 4398.638 kb on - strand at 4398.673 kb on + strand, within cmtA at 4398.673 kb on + strand, within cmtA at 4398.673 kb on + strand, within cmtA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,394,913 + loiP JDDGAC_22950 0.29 -1.3 4,394,992 - loiP JDDGAC_22950 0.40 -0.3 4,395,099 - loiP JDDGAC_22950 0.54 +0.5 4,395,125 + loiP JDDGAC_22950 0.57 +0.4 4,395,169 + loiP JDDGAC_22950 0.63 -0.4 4,395,170 - loiP JDDGAC_22950 0.63 -1.1 4,395,170 - loiP JDDGAC_22950 0.63 +1.4 4,395,170 - loiP JDDGAC_22950 0.63 +0.5 4,395,170 - loiP JDDGAC_22950 0.63 +1.4 4,395,200 + loiP JDDGAC_22950 0.67 -0.1 4,395,200 + loiP JDDGAC_22950 0.67 -0.4 4,395,224 + loiP JDDGAC_22950 0.70 -0.9 4,395,224 + loiP JDDGAC_22950 0.70 -0.1 4,395,224 + loiP JDDGAC_22950 0.70 +1.7 4,395,224 + loiP JDDGAC_22950 0.70 +2.1 4,395,224 + loiP JDDGAC_22950 0.70 -0.4 4,395,225 - loiP JDDGAC_22950 0.70 +0.6 4,395,225 - loiP JDDGAC_22950 0.70 -0.5 4,395,239 + loiP JDDGAC_22950 0.72 -0.2 4,395,337 + loiP JDDGAC_22950 0.85 -1.1 4,395,338 - loiP JDDGAC_22950 0.85 -1.1 4,395,338 - loiP JDDGAC_22950 0.85 -0.2 4,395,386 + +1.3 4,395,433 - -0.3 4,395,477 + -0.8 4,395,524 + -1.7 4,395,524 + -0.1 4,395,524 + +0.2 4,395,525 - +0.6 4,395,527 - +0.1 4,395,527 - -0.5 4,395,615 + -0.2 4,395,615 + +0.9 4,395,756 + +1.4 4,396,039 + tkt JDDGAC_22955 0.16 -0.2 4,396,409 + tkt JDDGAC_22955 0.34 +2.1 4,396,666 + tkt JDDGAC_22955 0.47 +0.4 4,396,937 - tkt JDDGAC_22955 0.61 +0.6 4,397,064 + tkt JDDGAC_22955 0.67 -0.1 4,397,064 + tkt JDDGAC_22955 0.67 +0.4 4,397,094 + tkt JDDGAC_22955 0.69 +0.6 4,397,239 + tkt JDDGAC_22955 0.76 -1.2 4,397,348 - tkt JDDGAC_22955 0.81 +0.9 4,397,584 + +1.3 4,397,590 + +1.1 4,397,591 - -0.2 4,397,591 - -0.4 4,397,716 + +1.0 4,397,716 + +0.8 4,397,721 - +0.3 4,398,477 + -1.0 4,398,638 - -0.4 4,398,673 + cmtA JDDGAC_22965 0.12 +1.2 4,398,673 + cmtA JDDGAC_22965 0.12 -0.7 4,398,673 + cmtA JDDGAC_22965 0.12 -0.4
Or see this region's nucleotide sequence