Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqhC and yghB are separated by 39 nucleotides yghB and metC are separated by 139 nucleotides metC and exbB are separated by 251 nucleotides exbB and exbD are separated by 6 nucleotides
JDDGAC_22585: yqhC - DNA-binding transcriptional regulator YqhC, at 4,322,397 to 4,323,353
yqhC
JDDGAC_22590: yghB - Inner membrane protein YghB, at 4,323,393 to 4,324,052
yghB
JDDGAC_22595: metC - cystathionine beta-lyase, at 4,324,192 to 4,325,379
metC
JDDGAC_22600: exbB - tol-pal system-associated acyl-CoA thioesterase, at 4,325,631 to 4,326,365
exbB
JDDGAC_22605: exbD - TonB system transport protein ExbD, at 4,326,372 to 4,326,797
exbD
Position (kb) 4324
4325
4326 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 4323.294 kb on + strand at 4323.294 kb on + strand at 4323.295 kb on - strand at 4323.295 kb on - strand at 4323.295 kb on - strand at 4323.355 kb on + strand at 4323.355 kb on + strand at 4323.367 kb on - strand at 4323.407 kb on - strand at 4323.416 kb on + strand at 4323.438 kb on + strand at 4323.489 kb on + strand, within yghB at 4323.524 kb on + strand, within yghB at 4323.524 kb on + strand, within yghB at 4323.528 kb on + strand, within yghB at 4323.528 kb on + strand, within yghB at 4323.528 kb on + strand, within yghB at 4323.528 kb on + strand, within yghB at 4323.528 kb on + strand, within yghB at 4323.549 kb on + strand, within yghB at 4323.724 kb on + strand, within yghB at 4323.725 kb on - strand, within yghB at 4323.729 kb on - strand, within yghB at 4323.791 kb on + strand, within yghB at 4323.792 kb on - strand, within yghB at 4323.799 kb on - strand, within yghB at 4323.967 kb on + strand, within yghB at 4323.984 kb on - strand, within yghB at 4323.984 kb on - strand, within yghB at 4323.984 kb on - strand, within yghB at 4324.035 kb on - strand at 4324.044 kb on - strand at 4324.076 kb on + strand at 4324.084 kb on + strand at 4324.084 kb on + strand at 4324.092 kb on + strand at 4324.092 kb on + strand at 4324.097 kb on + strand at 4324.097 kb on + strand at 4324.098 kb on - strand at 4324.193 kb on + strand at 4324.195 kb on + strand at 4324.195 kb on + strand at 4324.195 kb on + strand at 4324.195 kb on + strand at 4324.258 kb on - strand at 4324.258 kb on - strand at 4324.318 kb on - strand, within metC at 4324.400 kb on + strand, within metC at 4324.468 kb on - strand, within metC at 4324.603 kb on + strand, within metC at 4324.604 kb on - strand, within metC at 4324.604 kb on - strand, within metC at 4324.629 kb on + strand, within metC at 4324.629 kb on + strand, within metC at 4324.629 kb on + strand, within metC at 4324.629 kb on + strand, within metC at 4324.630 kb on - strand, within metC at 4324.630 kb on - strand, within metC at 4324.630 kb on - strand, within metC at 4324.630 kb on - strand, within metC at 4324.630 kb on - strand, within metC at 4324.630 kb on - strand, within metC at 4324.630 kb on - strand, within metC at 4324.631 kb on + strand, within metC at 4324.631 kb on + strand, within metC at 4324.631 kb on + strand, within metC at 4324.631 kb on + strand, within metC at 4324.632 kb on - strand, within metC at 4324.632 kb on - strand, within metC at 4324.632 kb on - strand, within metC at 4324.632 kb on - strand, within metC at 4324.632 kb on - strand, within metC at 4324.833 kb on + strand, within metC at 4324.833 kb on + strand, within metC at 4324.834 kb on - strand, within metC at 4324.834 kb on - strand, within metC at 4324.834 kb on - strand, within metC at 4325.106 kb on + strand, within metC at 4325.106 kb on + strand, within metC at 4325.107 kb on - strand, within metC at 4325.107 kb on - strand, within metC at 4325.134 kb on + strand, within metC at 4325.135 kb on - strand, within metC at 4325.180 kb on - strand, within metC at 4325.214 kb on - strand, within metC at 4325.214 kb on - strand, within metC at 4325.265 kb on + strand at 4325.266 kb on - strand at 4325.324 kb on + strand at 4325.428 kb on - strand at 4325.428 kb on - strand at 4325.457 kb on + strand at 4325.458 kb on - strand at 4325.541 kb on - strand at 4325.552 kb on - strand at 4325.565 kb on - strand at 4325.589 kb on + strand at 4325.590 kb on - strand at 4325.625 kb on + strand at 4325.625 kb on + strand at 4325.640 kb on - strand at 4325.644 kb on + strand at 4325.645 kb on - strand at 4325.673 kb on - strand at 4325.676 kb on + strand at 4325.677 kb on - strand at 4325.677 kb on - strand at 4325.690 kb on + strand at 4325.699 kb on + strand at 4325.735 kb on - strand, within exbB at 4325.768 kb on - strand, within exbB at 4325.879 kb on - strand, within exbB at 4325.951 kb on + strand, within exbB at 4325.960 kb on + strand, within exbB at 4325.960 kb on + strand, within exbB at 4325.961 kb on - strand, within exbB at 4325.996 kb on - strand, within exbB at 4326.071 kb on + strand, within exbB at 4326.166 kb on + strand, within exbB at 4326.210 kb on - strand, within exbB at 4326.213 kb on + strand, within exbB at 4326.213 kb on + strand, within exbB at 4326.213 kb on + strand, within exbB at 4326.213 kb on + strand, within exbB at 4326.213 kb on + strand, within exbB at 4326.213 kb on + strand, within exbB at 4326.215 kb on + strand, within exbB at 4326.216 kb on - strand, within exbB at 4326.220 kb on + strand, within exbB
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,323,294 + -0.4 4,323,294 + -0.4 4,323,295 - -0.6 4,323,295 - -1.6 4,323,295 - -0.2 4,323,355 + +2.3 4,323,355 + +0.9 4,323,367 - -0.7 4,323,407 - +0.0 4,323,416 + +0.3 4,323,438 + -0.7 4,323,489 + yghB JDDGAC_22590 0.15 +0.1 4,323,524 + yghB JDDGAC_22590 0.20 +0.9 4,323,524 + yghB JDDGAC_22590 0.20 -1.1 4,323,528 + yghB JDDGAC_22590 0.20 +0.2 4,323,528 + yghB JDDGAC_22590 0.20 +0.5 4,323,528 + yghB JDDGAC_22590 0.20 +0.7 4,323,528 + yghB JDDGAC_22590 0.20 -1.5 4,323,528 + yghB JDDGAC_22590 0.20 -1.0 4,323,549 + yghB JDDGAC_22590 0.24 +0.1 4,323,724 + yghB JDDGAC_22590 0.50 -3.0 4,323,725 - yghB JDDGAC_22590 0.50 -1.1 4,323,729 - yghB JDDGAC_22590 0.51 -0.3 4,323,791 + yghB JDDGAC_22590 0.60 -0.7 4,323,792 - yghB JDDGAC_22590 0.60 +2.8 4,323,799 - yghB JDDGAC_22590 0.62 +0.2 4,323,967 + yghB JDDGAC_22590 0.87 -0.4 4,323,984 - yghB JDDGAC_22590 0.90 +0.5 4,323,984 - yghB JDDGAC_22590 0.90 -0.0 4,323,984 - yghB JDDGAC_22590 0.90 +1.6 4,324,035 - -0.5 4,324,044 - +0.4 4,324,076 + -0.2 4,324,084 + +0.1 4,324,084 + +1.9 4,324,092 + +0.0 4,324,092 + -0.3 4,324,097 + -0.4 4,324,097 + -0.3 4,324,098 - -0.1 4,324,193 + -0.5 4,324,195 + -0.7 4,324,195 + -0.9 4,324,195 + -0.4 4,324,195 + -1.3 4,324,258 - -1.1 4,324,258 - -3.1 4,324,318 - metC JDDGAC_22595 0.11 -1.4 4,324,400 + metC JDDGAC_22595 0.18 -4.3 4,324,468 - metC JDDGAC_22595 0.23 -0.8 4,324,603 + metC JDDGAC_22595 0.35 -3.3 4,324,604 - metC JDDGAC_22595 0.35 +0.3 4,324,604 - metC JDDGAC_22595 0.35 -4.4 4,324,629 + metC JDDGAC_22595 0.37 -3.9 4,324,629 + metC JDDGAC_22595 0.37 -0.5 4,324,629 + metC JDDGAC_22595 0.37 -5.4 4,324,629 + metC JDDGAC_22595 0.37 -1.3 4,324,630 - metC JDDGAC_22595 0.37 -0.3 4,324,630 - metC JDDGAC_22595 0.37 -0.8 4,324,630 - metC JDDGAC_22595 0.37 -3.0 4,324,630 - metC JDDGAC_22595 0.37 -1.8 4,324,630 - metC JDDGAC_22595 0.37 -0.2 4,324,630 - metC JDDGAC_22595 0.37 +0.4 4,324,630 - metC JDDGAC_22595 0.37 -1.7 4,324,631 + metC JDDGAC_22595 0.37 -3.5 4,324,631 + metC JDDGAC_22595 0.37 -0.6 4,324,631 + metC JDDGAC_22595 0.37 +0.9 4,324,631 + metC JDDGAC_22595 0.37 -2.4 4,324,632 - metC JDDGAC_22595 0.37 -1.9 4,324,632 - metC JDDGAC_22595 0.37 -3.3 4,324,632 - metC JDDGAC_22595 0.37 -2.3 4,324,632 - metC JDDGAC_22595 0.37 -3.7 4,324,632 - metC JDDGAC_22595 0.37 -1.2 4,324,833 + metC JDDGAC_22595 0.54 -2.3 4,324,833 + metC JDDGAC_22595 0.54 -0.6 4,324,834 - metC JDDGAC_22595 0.54 +0.2 4,324,834 - metC JDDGAC_22595 0.54 -2.6 4,324,834 - metC JDDGAC_22595 0.54 -2.9 4,325,106 + metC JDDGAC_22595 0.77 -3.5 4,325,106 + metC JDDGAC_22595 0.77 -2.4 4,325,107 - metC JDDGAC_22595 0.77 +0.0 4,325,107 - metC JDDGAC_22595 0.77 -2.6 4,325,134 + metC JDDGAC_22595 0.79 +0.1 4,325,135 - metC JDDGAC_22595 0.79 -2.0 4,325,180 - metC JDDGAC_22595 0.83 -2.3 4,325,214 - metC JDDGAC_22595 0.86 -3.6 4,325,214 - metC JDDGAC_22595 0.86 -1.0 4,325,265 + -2.8 4,325,266 - -1.6 4,325,324 + -3.6 4,325,428 - -1.2 4,325,428 - +0.4 4,325,457 + +1.0 4,325,458 - -0.0 4,325,541 - -0.1 4,325,552 - -1.5 4,325,565 - -0.4 4,325,589 + -0.1 4,325,590 - +1.3 4,325,625 + -1.0 4,325,625 + -0.3 4,325,640 - -1.3 4,325,644 + +1.1 4,325,645 - -1.0 4,325,673 - +2.2 4,325,676 + +1.2 4,325,677 - -0.4 4,325,677 - +0.4 4,325,690 + +1.1 4,325,699 + -0.9 4,325,735 - exbB JDDGAC_22600 0.14 +0.6 4,325,768 - exbB JDDGAC_22600 0.19 +0.5 4,325,879 - exbB JDDGAC_22600 0.34 +3.4 4,325,951 + exbB JDDGAC_22600 0.44 -2.1 4,325,960 + exbB JDDGAC_22600 0.45 -1.4 4,325,960 + exbB JDDGAC_22600 0.45 +1.9 4,325,961 - exbB JDDGAC_22600 0.45 -0.7 4,325,996 - exbB JDDGAC_22600 0.50 +2.7 4,326,071 + exbB JDDGAC_22600 0.60 +0.3 4,326,166 + exbB JDDGAC_22600 0.73 +3.7 4,326,210 - exbB JDDGAC_22600 0.79 -0.5 4,326,213 + exbB JDDGAC_22600 0.79 +1.2 4,326,213 + exbB JDDGAC_22600 0.79 +2.1 4,326,213 + exbB JDDGAC_22600 0.79 -2.1 4,326,213 + exbB JDDGAC_22600 0.79 +0.3 4,326,213 + exbB JDDGAC_22600 0.79 +0.9 4,326,213 + exbB JDDGAC_22600 0.79 -0.6 4,326,215 + exbB JDDGAC_22600 0.79 +0.3 4,326,216 - exbB JDDGAC_22600 0.80 -1.3 4,326,220 + exbB JDDGAC_22600 0.80 -0.3
Or see this region's nucleotide sequence