Strain Fitness in Escherichia coli ECRC98 around JDDGAC_14125

Experiment: Control_ECRC98_WM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Control_ECRC98_WM
2,621,914	-	ampE	JDDGAC_14115	0.64	-0.6
2,621,920	-	ampE	JDDGAC_14115	0.65	+0.3
2,621,939	+	ampE	JDDGAC_14115	0.67	+0.7
2,621,939	+	ampE	JDDGAC_14115	0.67	+1.0
2,621,939	+	ampE	JDDGAC_14115	0.67	+0.2
2,621,940	-	ampE	JDDGAC_14115	0.67	-0.4
2,621,940	-	ampE	JDDGAC_14115	0.67	-1.6
2,621,948	+	ampE	JDDGAC_14115	0.68	-1.2
2,621,948	+	ampE	JDDGAC_14115	0.68	-0.1
2,621,948	+	ampE	JDDGAC_14115	0.68	-0.7
2,621,976	+	ampE	JDDGAC_14115	0.72	-0.2
2,622,029	-	ampE	JDDGAC_14115	0.78	-1.1
2,622,029	-	ampE	JDDGAC_14115	0.78	+1.4
2,622,053	-	ampE	JDDGAC_14115	0.81	-0.6
2,622,075	+	ampE	JDDGAC_14115	0.83	+0.6
2,622,089	-	ampE	JDDGAC_14115	0.85	+0.2
2,622,200	-				-0.7
2,622,200	-				+0.6
2,622,200	-				+2.1
2,622,208	-				+1.4
2,622,211	+				+2.2
2,622,211	+				+0.8
2,622,211	+				+0.3
2,622,300	-	ampD	JDDGAC_14120	0.15	-0.7
2,622,300	-	ampD	JDDGAC_14120	0.15	-0.8
2,622,320	+	ampD	JDDGAC_14120	0.19	+0.7
2,622,320	+	ampD	JDDGAC_14120	0.19	-0.0
2,622,321	-	ampD	JDDGAC_14120	0.19	+0.6
2,622,323	+	ampD	JDDGAC_14120	0.19	+0.9
2,622,323	+	ampD	JDDGAC_14120	0.19	+0.8
2,622,379	+	ampD	JDDGAC_14120	0.30	+1.5
2,622,380	-	ampD	JDDGAC_14120	0.30	+0.3
2,622,517	-	ampD	JDDGAC_14120	0.55	+0.0
2,622,517	-	ampD	JDDGAC_14120	0.55	+1.1
2,622,616	-	ampD	JDDGAC_14120	0.72	+0.9
2,622,616	-	ampD	JDDGAC_14120	0.72	-2.4
2,622,662	+	ampD	JDDGAC_14120	0.81	+0.3
2,622,663	-	ampD	JDDGAC_14120	0.81	+1.8
2,622,663	-	ampD	JDDGAC_14120	0.81	+1.4
2,622,663	-	ampD	JDDGAC_14120	0.81	+0.6
2,622,713	-				+1.3
2,622,780	+				-0.3
2,622,780	+				-0.8
2,622,780	+				-1.1
2,622,781	-				-0.0
2,622,781	-				-0.6
2,622,781	-				+2.0
2,622,781	-				-1.1
2,622,782	+				-0.6
2,622,782	+				+3.8
2,622,782	+				-0.7
2,622,782	+				-1.2
2,622,783	-				-0.4
2,622,783	-				-3.4
2,622,783	-				-2.3
2,622,783	-				+0.4
2,622,783	-				-2.0
2,622,783	-				-0.2
2,622,783	-				-0.9
2,622,783	-				+0.0
2,622,783	-				-0.1
2,622,783	-				+0.1
2,622,792	+				+1.4
2,622,793	-				+1.4
2,622,810	-				-1.0
2,622,820	+				+0.3
2,622,821	-				+0.1
2,622,825	+				-0.8
2,622,825	+				+0.2
2,622,839	+				-0.4
2,622,839	+				-1.5
2,622,852	-				-0.3
2,622,873	-				-2.4
2,622,912	-				+2.3
2,622,958	+	nadC	JDDGAC_14125	0.12	+0.2
2,623,054	+	nadC	JDDGAC_14125	0.22	-1.5
2,623,199	-	nadC	JDDGAC_14125	0.38	-1.1
2,623,253	+	nadC	JDDGAC_14125	0.45	-0.9
2,623,258	+	nadC	JDDGAC_14125	0.45	+0.6
2,623,258	+	nadC	JDDGAC_14125	0.45	-1.4
2,623,259	-	nadC	JDDGAC_14125	0.45	+1.8
2,623,266	+	nadC	JDDGAC_14125	0.46	+0.5
2,623,267	-	nadC	JDDGAC_14125	0.46	+0.3
2,623,276	+	nadC	JDDGAC_14125	0.47	-1.6
2,623,313	+	nadC	JDDGAC_14125	0.51	+0.1
2,623,314	-	nadC	JDDGAC_14125	0.51	+0.3
2,623,321	+	nadC	JDDGAC_14125	0.52	+1.2
2,623,354	+	nadC	JDDGAC_14125	0.56	+0.4
2,623,424	+	nadC	JDDGAC_14125	0.64	-3.2
2,623,425	-	nadC	JDDGAC_14125	0.64	+0.9
2,623,490	-	nadC	JDDGAC_14125	0.71	+0.5
2,623,685	+				+1.1
2,623,702	+				+0.9
2,623,706	+				-1.0
2,623,706	+				-1.6
2,623,706	+				+0.9
2,623,706	+				-0.6
2,623,706	+				-0.3
2,623,706	+				-0.2
2,623,706	+				-1.6
2,623,707	-				-1.1
2,623,707	-				+0.8
2,623,714	+				+1.2
2,623,714	+				-2.3
2,623,714	+				-0.5
2,623,850	+				+0.8
2,623,922	-				+0.3
2,624,016	-	ppdD	JDDGAC_14130	0.15	+0.6
2,624,048	-	ppdD	JDDGAC_14130	0.22	+0.8
2,624,078	+	ppdD	JDDGAC_14130	0.29	+0.4
2,624,078	+	ppdD	JDDGAC_14130	0.29	+0.1
2,624,078	+	ppdD	JDDGAC_14130	0.29	-0.3
2,624,078	+	ppdD	JDDGAC_14130	0.29	-1.2
2,624,138	+	ppdD	JDDGAC_14130	0.42	+0.3
2,624,179	-	ppdD	JDDGAC_14130	0.52	+0.2
2,624,191	+	ppdD	JDDGAC_14130	0.54	+0.3
2,624,192	-	ppdD	JDDGAC_14130	0.55	-0.5
2,624,389	+				-0.2
2,624,389	+				-0.3
2,624,389	+				-0.9
2,624,390	-				+0.5
2,624,545	-	gspE	JDDGAC_14135	0.10	-0.3
2,624,545	-	gspE	JDDGAC_14135	0.10	+0.4
2,624,667	-	gspE	JDDGAC_14135	0.19	+1.6