Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mor and rrrD are separated by 71 nucleotides rrrD and JDDGAC_05605 overlap by 38 nucleotides JDDGAC_05605 and JDDGAC_05610 are separated by 146 nucleotides JDDGAC_05610 and JDDGAC_05615 overlap by 20 nucleotides JDDGAC_05615 and JDDGAC_05620 overlap by 4 nucleotides
JDDGAC_05595: mor - transcriptional regulator, at 977,586 to 978,011
mor
JDDGAC_05600: rrrD - endolysin, at 978,083 to 978,583
rrrD
JDDGAC_05605: JDDGAC_05605 - hypothetical protein, at 978,546 to 979,046
_05605
JDDGAC_05610: JDDGAC_05610 - conjugal transfer protein TraR, at 979,193 to 979,486
_05610
JDDGAC_05615: JDDGAC_05615 - DUF2730 domain-containing protein, at 979,467 to 979,775
_05615
JDDGAC_05620: JDDGAC_05620 - hypothetical protein, at 979,772 to 980,062
_05620
Position (kb) 978
979
980 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 977.552 kb on - strand at 977.823 kb on + strand, within mor at 977.827 kb on - strand, within mor at 977.827 kb on - strand, within mor at 977.827 kb on - strand, within mor at 977.951 kb on + strand, within mor at 978.078 kb on + strand at 978.079 kb on - strand at 978.079 kb on - strand at 978.079 kb on - strand at 978.110 kb on - strand at 978.203 kb on + strand, within rrrD at 978.203 kb on + strand, within rrrD at 978.236 kb on + strand, within rrrD at 978.482 kb on + strand, within rrrD at 978.483 kb on - strand, within rrrD at 978.483 kb on - strand, within rrrD at 978.483 kb on - strand, within rrrD at 978.485 kb on - strand, within rrrD at 978.555 kb on + strand at 978.734 kb on + strand, within JDDGAC_05605 at 978.734 kb on + strand, within JDDGAC_05605 at 978.735 kb on - strand, within JDDGAC_05605 at 978.776 kb on + strand, within JDDGAC_05605 at 979.012 kb on + strand at 979.013 kb on - strand at 979.111 kb on + strand at 979.111 kb on + strand at 979.111 kb on + strand at 979.112 kb on - strand at 979.112 kb on - strand at 979.334 kb on - strand, within JDDGAC_05610 at 979.492 kb on - strand at 979.909 kb on + strand, within JDDGAC_05620 at 979.916 kb on - strand, within JDDGAC_05620 at 979.916 kb on - strand, within JDDGAC_05620
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 977,552 - +1.6 977,823 + mor JDDGAC_05595 0.56 +0.4 977,827 - mor JDDGAC_05595 0.57 -1.8 977,827 - mor JDDGAC_05595 0.57 -0.1 977,827 - mor JDDGAC_05595 0.57 -1.5 977,951 + mor JDDGAC_05595 0.86 +0.3 978,078 + +2.5 978,079 - -0.2 978,079 - -1.7 978,079 - -1.3 978,110 - +0.4 978,203 + rrrD JDDGAC_05600 0.24 +1.2 978,203 + rrrD JDDGAC_05600 0.24 -0.3 978,236 + rrrD JDDGAC_05600 0.31 +1.1 978,482 + rrrD JDDGAC_05600 0.80 +0.8 978,483 - rrrD JDDGAC_05600 0.80 +3.0 978,483 - rrrD JDDGAC_05600 0.80 +1.4 978,483 - rrrD JDDGAC_05600 0.80 -0.8 978,485 - rrrD JDDGAC_05600 0.80 +0.1 978,555 + -2.1 978,734 + JDDGAC_05605 0.38 +0.1 978,734 + JDDGAC_05605 0.38 -0.1 978,735 - JDDGAC_05605 0.38 -1.3 978,776 + JDDGAC_05605 0.46 -0.4 979,012 + -0.1 979,013 - +2.7 979,111 + +0.1 979,111 + +0.3 979,111 + +0.6 979,112 - -0.3 979,112 - +0.7 979,334 - JDDGAC_05610 0.48 +0.9 979,492 - +0.2 979,909 + JDDGAC_05620 0.47 +0.4 979,916 - JDDGAC_05620 0.49 +3.3 979,916 - JDDGAC_05620 0.49 -1.6
Or see this region's nucleotide sequence