Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_29480 and JDDGAC_29485 overlap by 4 nucleotides JDDGAC_29485 and JDDGAC_29495 are separated by 313 nucleotides JDDGAC_29495 and tnp-IS3 are separated by 81 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides
JDDGAC_29480: JDDGAC_29480 - TciA/TerB-like protein, at 5,619,346 to 5,619,492
_29480
JDDGAC_29485: JDDGAC_29485 - DUF3927 domain-containing protein, at 5,619,489 to 5,619,656
_29485
JDDGAC_29495: JDDGAC_29495 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 5,619,970 to 5,621,820
_29495
JDDGAC_29500: tnp-IS3 - IS3 family transposase, at 5,621,902 to 5,622,789
tnp-IS3
JDDGAC_29505: tnp-IS3 - IS3 family transposase, at 5,622,789 to 5,623,115
tnp-IS3
Position (kb) 5619
5620
5621
5622 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5618.983 kb on - strand at 5619.743 kb on - strand at 5620.306 kb on + strand, within JDDGAC_29495 at 5620.308 kb on + strand, within JDDGAC_29495 at 5620.354 kb on - strand, within JDDGAC_29495 at 5620.359 kb on + strand, within JDDGAC_29495 at 5621.821 kb on + strand at 5621.858 kb on - strand at 5621.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 5,618,983 - +4.6 5,619,743 - +1.2 5,620,306 + JDDGAC_29495 0.18 -1.2 5,620,308 + JDDGAC_29495 0.18 -1.4 5,620,354 - JDDGAC_29495 0.21 -1.2 5,620,359 + JDDGAC_29495 0.21 -0.8 5,621,821 + +0.4 5,621,858 - +1.5 5,621,858 - -0.5
Or see this region's nucleotide sequence