Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04425

Experiment: Control_ECRC98

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntJDDGAC_04410 and JDDGAC_04415 are separated by 11 nucleotidesJDDGAC_04415 and JDDGAC_04420 are separated by 11 nucleotidesJDDGAC_04420 and JDDGAC_04425 are separated by 41 nucleotidesJDDGAC_04425 and JDDGAC_04430 are separated by 55 nucleotidesJDDGAC_04430 and sppA are separated by 9 nucleotides JDDGAC_04410: JDDGAC_04410 - Tail completion protein Z, at 783,099 to 783,677 _04410 JDDGAC_04415: JDDGAC_04415 - phage tail protein, at 783,689 to 784,042 _04415 JDDGAC_04420: JDDGAC_04420 - DNA-packaging protein FI, at 784,054 to 784,449 _04420 JDDGAC_04425: JDDGAC_04425 - Major capsid protein, at 784,491 to 785,516 _04425 JDDGAC_04430: JDDGAC_04430 - head decoration protein, at 785,572 to 785,904 _04430 JDDGAC_04435: sppA - capsid assembly protein, at 785,914 to 787,233 sppA Position (kb) 784 785 786Strain fitness (log2 ratio) -2 -1 0 1 2 3at 783.677 kb on + strandat 783.677 kb on + strandat 784.489 kb on - strandat 784.929 kb on - strand, within JDDGAC_04425at 785.099 kb on - strand, within JDDGAC_04425at 785.099 kb on - strand, within JDDGAC_04425

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98
remove
783,677 + +1.4
783,677 + -1.8
784,489 - +3.2
784,929 - JDDGAC_04425 0.43 +0.6
785,099 - JDDGAC_04425 0.59 +1.1
785,099 - JDDGAC_04425 0.59 -0.2

Or see this region's nucleotide sequence